data_7PCE # _model_server_result.job_id '_WIxwI8L5ZK9PorZM6ZeYg' _model_server_result.datetime_utc '2024-11-14 21:08:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7PCE # _exptl.entry_id 7PCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7PCE _cell.length_a 61.34 _cell.length_b 61.34 _cell.length_c 190.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 63.346667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7PCE _atom_sites.fract_transf_matrix[1][1] 0.016303 _atom_sites.fract_transf_matrix[1][2] 0.009412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 801 801 ADP ADP . C 3 PO4 A 1 802 1 PO4 PO4 . D 3 PO4 A 1 803 2 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -14.501 18.2 11.004 1 108.56 ? PB ADP 801 A 1 HETATM 2 O O1B ADP . . . B 2 -14.906 19.459 10.294 1 108.56 ? O1B ADP 801 A 1 HETATM 3 O O2B ADP . . . B 2 -14.406 18.38 12.494 1 108.96 ? O2B ADP 801 A 1 HETATM 4 O O3B ADP . . . B 2 -13.267 17.573 10.418 1 107.25 ? O3B ADP 801 A 1 HETATM 5 P PA ADP . . . B 2 -17.286 17.347 10.66 1 97.57 ? PA ADP 801 A 1 HETATM 6 O O1A ADP . . . B 2 -17.877 16.086 10.133 1 96.86 ? O1A ADP 801 A 1 HETATM 7 O O2A ADP . . . B 2 -17.799 17.891 11.95 1 95.38 ? O2A ADP 801 A 1 HETATM 8 O O3A ADP . . . B 2 -15.701 17.156 10.765 1 102.6 ? O3A ADP 801 A 1 HETATM 9 O O5' ADP . . . B 2 -17.377 18.477 9.535 1 93.84 ? O5' ADP 801 A 1 HETATM 10 C C5' ADP . . . B 2 -17.886 18.076 8.245 1 90.08 ? C5' ADP 801 A 1 HETATM 11 C C4' ADP . . . B 2 -17.816 19.238 7.288 1 87.68 ? C4' ADP 801 A 1 HETATM 12 O O4' ADP . . . B 2 -17.279 18.762 6.03 1 86.43 ? O4' ADP 801 A 1 HETATM 13 C C3' ADP . . . B 2 -19.158 19.874 6.916 1 86.57 ? C3' ADP 801 A 1 HETATM 14 O O3' ADP . . . B 2 -18.984 21.208 6.462 1 86.48 ? O3' ADP 801 A 1 HETATM 15 C C2' ADP . . . B 2 -19.61 18.982 5.761 1 86.62 ? C2' ADP 801 A 1 HETATM 16 O O2' ADP . . . B 2 -20.548 19.618 4.921 1 85.9 ? O2' ADP 801 A 1 HETATM 17 C C1' ADP . . . B 2 -18.288 18.732 5.046 1 86.52 ? C1' ADP 801 A 1 HETATM 18 N N9 ADP . . . B 2 -18.222 17.447 4.363 1 85.81 ? N9 ADP 801 A 1 HETATM 19 C C8 ADP . . . B 2 -18.481 16.216 4.906 1 85.54 ? C8 ADP 801 A 1 HETATM 20 N N7 ADP . . . B 2 -18.34 15.232 4.056 1 86.09 ? N7 ADP 801 A 1 HETATM 21 C C5 ADP . . . B 2 -17.963 15.851 2.875 1 86.21 ? C5 ADP 801 A 1 HETATM 22 C C6 ADP . . . B 2 -17.662 15.346 1.597 1 86.75 ? C6 ADP 801 A 1 HETATM 23 N N6 ADP . . . B 2 -17.691 14.054 1.287 1 87.17 ? N6 ADP 801 A 1 HETATM 24 N N1 ADP . . . B 2 -17.32 16.236 0.639 1 87.68 ? N1 ADP 801 A 1 HETATM 25 C C2 ADP . . . B 2 -17.29 17.535 0.957 1 87.03 ? C2 ADP 801 A 1 HETATM 26 N N3 ADP . . . B 2 -17.554 18.122 2.119 1 86.88 ? N3 ADP 801 A 1 HETATM 27 C C4 ADP . . . B 2 -17.888 17.217 3.051 1 86.13 ? C4 ADP 801 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #