data_7PCI # _model_server_result.job_id U7jRXHld7qkDZJnD2Xs1bw _model_server_result.datetime_utc '2024-11-25 13:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7PCI # _exptl.entry_id 7PCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PCI _cell.length_a 75.67 _cell.length_b 84.47 _cell.length_c 46.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -84.47 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 196 A ASP 191 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc2 A OD2 ASP 196 A ASP 191 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc3 A OE2 GLU 200 A GLU 195 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 C MG MG . A MG 802 1_555 E O7 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 C MG MG . A MG 802 1_555 E O6 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc6 C MG MG . A MG 802 1_555 G O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 C MG MG . A MG 802 1_555 G O HOH . A HOH 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc8 C MG MG . A MG 802 1_555 G O HOH . A HOH 962 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc9 D MG MG . A MG 803 1_555 E O2 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc10 D MG MG . A MG 803 1_555 E O6 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc11 D MG MG . A MG 803 1_555 G O HOH . A HOH 935 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc12 D MG MG . A MG 803 1_555 G O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 257 n n PA O2A NAD sing 258 n n PA O5B NAD sing 259 n n PA O3 NAD sing 260 n n O2A HOA2 NAD sing 261 n n O5B C5B NAD sing 262 n n C5B C4B NAD sing 263 n n C5B H51A NAD sing 264 n n C5B H52A NAD sing 265 n n C4B O4B NAD sing 266 n n C4B C3B NAD sing 267 n n C4B H4B NAD sing 268 n n O4B C1B NAD sing 269 n n C3B O3B NAD sing 270 n n C3B C2B NAD sing 271 n n C3B H3B NAD sing 272 n n O3B HO3A NAD sing 273 n n C2B O2B NAD sing 274 n n C2B C1B NAD sing 275 n n C2B H2B NAD sing 276 n n O2B HO2A NAD sing 277 n n C1B N9A NAD sing 278 n n C1B H1B NAD sing 279 n n N9A C8A NAD sing 280 n y N9A C4A NAD sing 281 n y C8A N7A NAD doub 282 n y C8A H8A NAD sing 283 n n N7A C5A NAD sing 284 n y C5A C6A NAD sing 285 n y C5A C4A NAD doub 286 n y C6A N6A NAD sing 287 n n C6A N1A NAD doub 288 n y N6A H61A NAD sing 289 n n N6A H62A NAD sing 290 n n N1A C2A NAD sing 291 n y C2A N3A NAD doub 292 n y C2A H2A NAD sing 293 n n N3A C4A NAD sing 294 n y O3 PN NAD sing 295 n n PN O1N NAD doub 296 n n PN O2N NAD sing 297 n n PN O5D NAD sing 298 n n O5D C5D NAD sing 299 n n C5D C4D NAD sing 300 n n C5D H51N NAD sing 301 n n C5D H52N NAD sing 302 n n C4D O4D NAD sing 303 n n C4D C3D NAD sing 304 n n C4D H4D NAD sing 305 n n O4D C1D NAD sing 306 n n C3D O3D NAD sing 307 n n C3D C2D NAD sing 308 n n C3D H3D NAD sing 309 n n O3D HO3N NAD sing 310 n n C2D O2D NAD sing 311 n n C2D C1D NAD sing 312 n n C2D H2D NAD sing 313 n n O2D HO2N NAD sing 314 n n C1D N1N NAD sing 315 n n C1D H1D NAD sing 316 n n N1N C2N NAD sing 317 n y N1N C6N NAD doub 318 n y C2N C3N NAD doub 319 n y C2N H2N NAD sing 320 n n C3N C7N NAD sing 321 n n C3N C4N NAD sing 322 n y C7N O7N NAD doub 323 n n C7N N7N NAD sing 324 n n N7N H71N NAD sing 325 n n N7N H72N NAD sing 326 n n C4N C5N NAD doub 327 n y C4N H4N NAD sing 328 n n C5N C6N NAD sing 329 n y C5N H5N NAD sing 330 n n C6N H6N NAD sing 331 n n # _atom_sites.entry_id 7PCI _atom_sites.fract_transf_matrix[1][1] 0.013215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 801 801 NAD NAD . C 3 MG A 1 802 802 MG MG . D 3 MG A 1 803 803 MG MG . E 4 74I A 1 804 804 74I LIG . F 5 IMD A 1 805 1 IMD IMD . G 6 HOH A 1 901 59 HOH HOH . G 6 HOH A 2 902 25 HOH HOH . G 6 HOH A 3 903 29 HOH HOH . G 6 HOH A 4 904 28 HOH HOH . G 6 HOH A 5 905 32 HOH HOH . G 6 HOH A 6 906 13 HOH HOH . G 6 HOH A 7 907 63 HOH HOH . G 6 HOH A 8 908 60 HOH HOH . G 6 HOH A 9 909 15 HOH HOH . G 6 HOH A 10 910 4 HOH HOH . G 6 HOH A 11 911 57 HOH HOH . G 6 HOH A 12 912 27 HOH HOH . G 6 HOH A 13 913 3 HOH HOH . G 6 HOH A 14 914 19 HOH HOH . G 6 HOH A 15 915 2 HOH HOH . G 6 HOH A 16 916 17 HOH HOH . G 6 HOH A 17 917 34 HOH HOH . G 6 HOH A 18 918 44 HOH HOH . G 6 HOH A 19 919 33 HOH HOH . G 6 HOH A 20 920 43 HOH HOH . G 6 HOH A 21 921 37 HOH HOH . G 6 HOH A 22 922 31 HOH HOH . G 6 HOH A 23 923 18 HOH HOH . G 6 HOH A 24 924 36 HOH HOH . G 6 HOH A 25 925 55 HOH HOH . G 6 HOH A 26 926 16 HOH HOH . G 6 HOH A 27 927 9 HOH HOH . G 6 HOH A 28 928 12 HOH HOH . G 6 HOH A 29 929 21 HOH HOH . G 6 HOH A 30 930 50 HOH HOH . G 6 HOH A 31 931 38 HOH HOH . G 6 HOH A 32 932 52 HOH HOH . G 6 HOH A 33 933 11 HOH HOH . G 6 HOH A 34 934 10 HOH HOH . G 6 HOH A 35 935 64 HOH HOH . G 6 HOH A 36 936 56 HOH HOH . G 6 HOH A 37 937 49 HOH HOH . G 6 HOH A 38 938 61 HOH HOH . G 6 HOH A 39 939 47 HOH HOH . G 6 HOH A 40 940 66 HOH HOH . G 6 HOH A 41 941 51 HOH HOH . G 6 HOH A 42 942 22 HOH HOH . G 6 HOH A 43 943 5 HOH HOH . G 6 HOH A 44 944 42 HOH HOH . G 6 HOH A 45 945 6 HOH HOH . G 6 HOH A 46 946 7 HOH HOH . G 6 HOH A 47 947 24 HOH HOH . G 6 HOH A 48 948 14 HOH HOH . G 6 HOH A 49 949 40 HOH HOH . G 6 HOH A 50 950 35 HOH HOH . G 6 HOH A 51 951 41 HOH HOH . G 6 HOH A 52 952 39 HOH HOH . G 6 HOH A 53 953 8 HOH HOH . G 6 HOH A 54 954 62 HOH HOH . G 6 HOH A 55 955 23 HOH HOH . G 6 HOH A 56 956 26 HOH HOH . G 6 HOH A 57 957 20 HOH HOH . G 6 HOH A 58 958 46 HOH HOH . G 6 HOH A 59 959 58 HOH HOH . G 6 HOH A 60 960 48 HOH HOH . G 6 HOH A 61 961 54 HOH HOH . G 6 HOH A 62 962 65 HOH HOH . G 6 HOH A 63 963 45 HOH HOH . G 6 HOH A 64 965 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -3.038 -19.806 13.784 1 27.69 ? PA NAD 801 A 1 HETATM 2 O O1A NAD . . . B 2 -3.831 -19.909 12.553 1 28.17 ? O1A NAD 801 A 1 HETATM 3 O O2A NAD . . . B 2 -3.467 -20.614 14.937 1 28.39 ? O2A NAD 801 A 1 HETATM 4 O O5B NAD . . . B 2 -2.965 -18.306 14.199 1 28.95 ? O5B NAD 801 A 1 HETATM 5 C C5B NAD . . . B 2 -4.006 -17.696 14.999 1 29.64 ? C5B NAD 801 A 1 HETATM 6 C C4B NAD . . . B 2 -3.401 -16.652 15.906 1 29.23 ? C4B NAD 801 A 1 HETATM 7 O O4B NAD . . . B 2 -2.867 -15.581 15.109 1 29.23 ? O4B NAD 801 A 1 HETATM 8 C C3B NAD . . . B 2 -4.306 -15.956 16.935 1 29.47 ? C3B NAD 801 A 1 HETATM 9 O O3B NAD . . . B 2 -3.526 -15.547 18.041 1 29.41 ? O3B NAD 801 A 1 HETATM 10 C C2B NAD . . . B 2 -4.74 -14.697 16.186 1 29.65 ? C2B NAD 801 A 1 HETATM 11 O O2B NAD . . . B 2 -5.023 -13.585 16.996 1 31.92 ? O2B NAD 801 A 1 HETATM 12 C C1B NAD . . . B 2 -3.452 -14.361 15.462 1 29.39 ? C1B NAD 801 A 1 HETATM 13 N N9A NAD . . . B 2 -3.66 -13.584 14.255 1 29.7 ? N9A NAD 801 A 1 HETATM 14 C C8A NAD . . . B 2 -4.289 -14.015 13.127 1 30.17 ? C8A NAD 801 A 1 HETATM 15 N N7A NAD . . . B 2 -4.313 -13.125 12.187 1 30.94 ? N7A NAD 801 A 1 HETATM 16 C C5A NAD . . . B 2 -3.698 -12.021 12.734 1 30.68 ? C5A NAD 801 A 1 HETATM 17 C C6A NAD . . . B 2 -3.431 -10.737 12.237 1 31.54 ? C6A NAD 801 A 1 HETATM 18 N N6A NAD . . . B 2 -3.788 -10.321 11.035 1 33.33 ? N6A NAD 801 A 1 HETATM 19 N N1A NAD . . . B 2 -2.8 -9.871 13.05 1 31.43 ? N1A NAD 801 A 1 HETATM 20 C C2A NAD . . . B 2 -2.478 -10.276 14.278 1 30.4 ? C2A NAD 801 A 1 HETATM 21 N N3A NAD . . . B 2 -2.661 -11.456 14.837 1 29.11 ? N3A NAD 801 A 1 HETATM 22 C C4A NAD . . . B 2 -3.294 -12.291 14.018 1 29.25 ? C4A NAD 801 A 1 HETATM 23 O O3 NAD . . . B 2 -1.543 -20.08 13.407 1 27.5 ? O3 NAD 801 A 1 HETATM 24 P PN NAD . . . B 2 -0.429 -21.133 13.703 1 26.88 ? PN NAD 801 A 1 HETATM 25 O O1N NAD . . . B 2 -0.773 -22.392 13.045 1 26.75 ? O1N NAD 801 A 1 HETATM 26 O O2N NAD . . . B 2 -0.241 -21.16 15.181 1 26.25 ? O2N NAD 801 A 1 HETATM 27 O O5D NAD . . . B 2 0.828 -20.493 13.01 1 27.37 ? O5D NAD 801 A 1 HETATM 28 C C5D NAD . . . B 2 1.717 -19.625 13.714 1 26.56 ? C5D NAD 801 A 1 HETATM 29 C C4D NAD . . . B 2 3.086 -19.641 13.088 1 26.51 ? C4D NAD 801 A 1 HETATM 30 O O4D NAD . . . B 2 3.716 -20.889 13.344 1 25.8 ? O4D NAD 801 A 1 HETATM 31 C C3D NAD . . . B 2 3.172 -19.439 11.563 1 25.92 ? C3D NAD 801 A 1 HETATM 32 O O3D NAD . . . B 2 4.367 -18.749 11.294 1 23.17 ? O3D NAD 801 A 1 HETATM 33 C C2D NAD . . . B 2 3.27 -20.884 11.074 1 26.04 ? C2D NAD 801 A 1 HETATM 34 O O2D NAD . . . B 2 3.823 -21.015 9.779 1 26.53 ? O2D NAD 801 A 1 HETATM 35 C C1D NAD . . . B 2 4.108 -21.512 12.187 1 26.63 ? C1D NAD 801 A 1 HETATM 36 N N1N NAD . . . B 2 3.896 -22.958 12.374 1 26.9 ? N1N NAD 801 A 1 HETATM 37 C C2N NAD . . . B 2 2.672 -23.443 12.695 1 27.14 ? C2N NAD 801 A 1 HETATM 38 C C3N NAD . . . B 2 2.498 -24.789 12.905 1 27.74 ? C3N NAD 801 A 1 HETATM 39 C C7N NAD . . . B 2 1.133 -25.382 13.125 1 29.14 ? C7N NAD 801 A 1 HETATM 40 O O7N NAD . . . B 2 1.033 -26.58 13.308 1 32.87 ? O7N NAD 801 A 1 HETATM 41 N N7N NAD . . . B 2 0.085 -24.591 13.095 1 28.96 ? N7N NAD 801 A 1 HETATM 42 C C4N NAD . . . B 2 3.604 -25.598 12.925 1 27.84 ? C4N NAD 801 A 1 HETATM 43 C C5N NAD . . . B 2 4.825 -25.082 12.63 1 27.91 ? C5N NAD 801 A 1 HETATM 44 C C6N NAD . . . B 2 4.921 -23.77 12.274 1 27.57 ? C6N NAD 801 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #