data_7PCI # _model_server_result.job_id fTldr6vmOdPxaP4eymnzjQ _model_server_result.datetime_utc '2024-11-14 21:09:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 7PCI # _exptl.entry_id 7PCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(Z)-2,3-bis(oxidanyl)prop-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PCI _cell.length_a 75.67 _cell.length_b 84.47 _cell.length_c 46.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -84.47 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 196 A ASP 191 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc2 A OD2 ASP 196 A ASP 191 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc3 A OE2 GLU 200 A GLU 195 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 C MG MG . A MG 802 1_555 E O7 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 C MG MG . A MG 802 1_555 E O6 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc6 C MG MG . A MG 802 1_555 G O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 C MG MG . A MG 802 1_555 G O HOH . A HOH 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc8 C MG MG . A MG 802 1_555 G O HOH . A HOH 962 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc9 D MG MG . A MG 803 1_555 E O2 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc10 D MG MG . A MG 803 1_555 E O6 74I . A 74I 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc11 D MG MG . A MG 803 1_555 G O HOH . A HOH 935 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc12 D MG MG . A MG 803 1_555 G O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id 74I _chem_comp.mon_nstd_flag . _chem_comp.name '(Z)-2,3-bis(oxidanyl)prop-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-dihydroxyacrylic acid;2,3-dihydroxyprop-2-enoic acid;67573738' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 74I doub 1 n n O6 C4 74I sing 2 n n C1 C4 74I sing 3 n n C1 O3 74I sing 4 n n C4 C5 74I doub 5 z n C5 O7 74I sing 6 n n C5 H1 74I sing 7 n n O3 H2 74I sing 8 n n O6 H3 74I sing 9 n n O7 H4 74I sing 10 n n # _atom_sites.entry_id 7PCI _atom_sites.fract_transf_matrix[1][1] 0.013215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 801 801 NAD NAD . C 3 MG A 1 802 802 MG MG . D 3 MG A 1 803 803 MG MG . E 4 74I A 1 804 804 74I LIG . F 5 IMD A 1 805 1 IMD IMD . G 6 HOH A 1 901 59 HOH HOH . G 6 HOH A 2 902 25 HOH HOH . G 6 HOH A 3 903 29 HOH HOH . G 6 HOH A 4 904 28 HOH HOH . G 6 HOH A 5 905 32 HOH HOH . G 6 HOH A 6 906 13 HOH HOH . G 6 HOH A 7 907 63 HOH HOH . G 6 HOH A 8 908 60 HOH HOH . G 6 HOH A 9 909 15 HOH HOH . G 6 HOH A 10 910 4 HOH HOH . G 6 HOH A 11 911 57 HOH HOH . G 6 HOH A 12 912 27 HOH HOH . G 6 HOH A 13 913 3 HOH HOH . G 6 HOH A 14 914 19 HOH HOH . G 6 HOH A 15 915 2 HOH HOH . G 6 HOH A 16 916 17 HOH HOH . G 6 HOH A 17 917 34 HOH HOH . G 6 HOH A 18 918 44 HOH HOH . G 6 HOH A 19 919 33 HOH HOH . G 6 HOH A 20 920 43 HOH HOH . G 6 HOH A 21 921 37 HOH HOH . G 6 HOH A 22 922 31 HOH HOH . G 6 HOH A 23 923 18 HOH HOH . G 6 HOH A 24 924 36 HOH HOH . G 6 HOH A 25 925 55 HOH HOH . G 6 HOH A 26 926 16 HOH HOH . G 6 HOH A 27 927 9 HOH HOH . G 6 HOH A 28 928 12 HOH HOH . G 6 HOH A 29 929 21 HOH HOH . G 6 HOH A 30 930 50 HOH HOH . G 6 HOH A 31 931 38 HOH HOH . G 6 HOH A 32 932 52 HOH HOH . G 6 HOH A 33 933 11 HOH HOH . G 6 HOH A 34 934 10 HOH HOH . G 6 HOH A 35 935 64 HOH HOH . G 6 HOH A 36 936 56 HOH HOH . G 6 HOH A 37 937 49 HOH HOH . G 6 HOH A 38 938 61 HOH HOH . G 6 HOH A 39 939 47 HOH HOH . G 6 HOH A 40 940 66 HOH HOH . G 6 HOH A 41 941 51 HOH HOH . G 6 HOH A 42 942 22 HOH HOH . G 6 HOH A 43 943 5 HOH HOH . G 6 HOH A 44 944 42 HOH HOH . G 6 HOH A 45 945 6 HOH HOH . G 6 HOH A 46 946 7 HOH HOH . G 6 HOH A 47 947 24 HOH HOH . G 6 HOH A 48 948 14 HOH HOH . G 6 HOH A 49 949 40 HOH HOH . G 6 HOH A 50 950 35 HOH HOH . G 6 HOH A 51 951 41 HOH HOH . G 6 HOH A 52 952 39 HOH HOH . G 6 HOH A 53 953 8 HOH HOH . G 6 HOH A 54 954 62 HOH HOH . G 6 HOH A 55 955 23 HOH HOH . G 6 HOH A 56 956 26 HOH HOH . G 6 HOH A 57 957 20 HOH HOH . G 6 HOH A 58 958 46 HOH HOH . G 6 HOH A 59 959 58 HOH HOH . G 6 HOH A 60 960 48 HOH HOH . G 6 HOH A 61 961 54 HOH HOH . G 6 HOH A 62 962 65 HOH HOH . G 6 HOH A 63 963 45 HOH HOH . G 6 HOH A 64 965 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 74I . . . E 4 3.1 -26.617 10.049 1 31.05 ? C4 74I 804 A 1 HETATM 2 C C5 74I . . . E 4 3.042 -27.828 10.983 1 30.72 ? C5 74I 804 A 1 HETATM 3 O O3 74I . . . E 4 0.782 -25.946 10.299 1 30.94 ? O3 74I 804 A 1 HETATM 4 C C1 74I . . . E 4 1.889 -25.727 9.765 1 31.41 ? C1 74I 804 A 1 HETATM 5 O O2 74I . . . E 4 2.029 -24.759 8.985 1 32.14 ? O2 74I 804 A 1 HETATM 6 O O6 74I . . . E 4 4.271 -26.333 9.431 1 33.18 ? O6 74I 804 A 1 HETATM 7 O O7 74I . . . E 4 4.215 -28.527 11.139 1 26.77 ? O7 74I 804 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #