data_7PCM # _model_server_result.job_id keZIbWa2bATwArPOJ0YNAw _model_server_result.datetime_utc '2024-11-25 12:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":805}' # _entry.id 7PCM # _exptl.entry_id 7PCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PCM _cell.length_a 75.81 _cell.length_b 83.61 _cell.length_c 100.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 196 A ASP 191 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A OD2 ASP 196 A ASP 191 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc3 A OE2 GLU 200 A GLU 195 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 A OE1 GLU 252 A GLU 247 1_555 G NA NA . A NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 D MG MG . A MG 802 1_555 L O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 D MG MG . A MG 802 1_555 L O HOH . A HOH 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc7 D MG MG . A MG 802 1_555 H O7 7I3 . B 7I3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 D MG MG . A MG 802 1_555 H O5 7I3 . B 7I3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc9 D MG MG . A MG 802 1_555 M O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc10 E MG MG . A MG 803 1_555 L O HOH . A HOH 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc11 E MG MG . A MG 803 1_555 H O1 7I3 . B 7I3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc12 E MG MG . A MG 803 1_555 H O5 7I3 . B 7I3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc13 E MG MG . A MG 803 1_555 M O HOH . B HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc14 F O5 7I3 . A 7I3 804 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc15 F O7 7I3 . A 7I3 804 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc16 F O1 7I3 . A 7I3 804 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc17 F O5 7I3 . A 7I3 804 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc18 G NA NA . A NA 805 1_555 L O HOH . A HOH 916 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc19 G NA NA . A NA 805 1_555 M O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc20 L O HOH . A HOH 913 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc21 B OD1 ASP 196 B ASP 191 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc22 B OD2 ASP 196 B ASP 191 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc23 B OE2 GLU 200 B GLU 195 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc24 J MG MG . B MG 403 1_555 M O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc25 J MG MG . B MG 403 1_555 M O HOH . B HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc26 K MG MG . B MG 404 1_555 M O HOH . B HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc27 K MG MG . B MG 404 1_555 M O HOH . B HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PCM _atom_sites.fract_transf_matrix[1][1] 0.013191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 801 801 NAI NAI . D 3 MG A 1 802 802 MG MG . E 3 MG A 1 803 803 MG MG . F 4 7I3 A 1 804 804 7I3 LIG . G 5 NA A 1 805 1 NA NA . H 4 7I3 B 1 401 804 7I3 LIG . I 2 NAI B 1 402 801 NAI NAI . J 3 MG B 1 403 802 MG MG . K 3 MG B 1 404 803 MG MG . L 6 HOH A 1 901 84 HOH HOH . L 6 HOH A 2 902 22 HOH HOH . L 6 HOH A 3 903 11 HOH HOH . L 6 HOH A 4 904 3 HOH HOH . L 6 HOH A 5 905 78 HOH HOH . L 6 HOH A 6 906 62 HOH HOH . L 6 HOH A 7 907 59 HOH HOH . L 6 HOH A 8 908 35 HOH HOH . L 6 HOH A 9 909 89 HOH HOH . L 6 HOH A 10 910 5 HOH HOH . L 6 HOH A 11 911 100 HOH HOH . L 6 HOH A 12 912 44 HOH HOH . L 6 HOH A 13 913 104 HOH HOH . L 6 HOH A 14 914 97 HOH HOH . L 6 HOH A 15 915 16 HOH HOH . L 6 HOH A 16 916 102 HOH HOH . L 6 HOH A 17 917 52 HOH HOH . L 6 HOH A 18 918 50 HOH HOH . L 6 HOH A 19 919 27 HOH HOH . L 6 HOH A 20 920 32 HOH HOH . L 6 HOH A 21 921 111 HOH HOH . L 6 HOH A 22 922 106 HOH HOH . L 6 HOH A 23 923 67 HOH HOH . L 6 HOH A 24 924 8 HOH HOH . L 6 HOH A 25 925 83 HOH HOH . L 6 HOH A 26 926 19 HOH HOH . L 6 HOH A 27 927 77 HOH HOH . L 6 HOH A 28 928 9 HOH HOH . L 6 HOH A 29 929 69 HOH HOH . L 6 HOH A 30 930 30 HOH HOH . L 6 HOH A 31 931 85 HOH HOH . L 6 HOH A 32 932 23 HOH HOH . L 6 HOH A 33 933 18 HOH HOH . L 6 HOH A 34 934 26 HOH HOH . L 6 HOH A 35 935 76 HOH HOH . L 6 HOH A 36 936 61 HOH HOH . L 6 HOH A 37 937 31 HOH HOH . L 6 HOH A 38 938 93 HOH HOH . L 6 HOH A 39 939 82 HOH HOH . L 6 HOH A 40 940 90 HOH HOH . L 6 HOH A 41 941 46 HOH HOH . L 6 HOH A 42 942 92 HOH HOH . L 6 HOH A 43 943 37 HOH HOH . L 6 HOH A 44 944 38 HOH HOH . L 6 HOH A 45 945 40 HOH HOH . L 6 HOH A 46 946 41 HOH HOH . L 6 HOH A 47 947 72 HOH HOH . L 6 HOH A 48 948 49 HOH HOH . L 6 HOH A 49 949 65 HOH HOH . L 6 HOH A 50 950 109 HOH HOH . L 6 HOH A 51 951 74 HOH HOH . L 6 HOH A 52 952 70 HOH HOH . M 6 HOH B 1 501 56 HOH HOH . M 6 HOH B 2 502 81 HOH HOH . M 6 HOH B 3 503 91 HOH HOH . M 6 HOH B 4 504 4 HOH HOH . M 6 HOH B 5 505 94 HOH HOH . M 6 HOH B 6 506 110 HOH HOH . M 6 HOH B 7 507 51 HOH HOH . M 6 HOH B 8 508 13 HOH HOH . M 6 HOH B 9 509 108 HOH HOH . M 6 HOH B 10 510 58 HOH HOH . M 6 HOH B 11 511 101 HOH HOH . M 6 HOH B 12 512 43 HOH HOH . M 6 HOH B 13 513 47 HOH HOH . M 6 HOH B 14 514 28 HOH HOH . M 6 HOH B 15 515 95 HOH HOH . M 6 HOH B 16 516 33 HOH HOH . M 6 HOH B 17 517 45 HOH HOH . M 6 HOH B 18 518 29 HOH HOH . M 6 HOH B 19 519 86 HOH HOH . M 6 HOH B 20 520 17 HOH HOH . M 6 HOH B 21 521 14 HOH HOH . M 6 HOH B 22 522 25 HOH HOH . M 6 HOH B 23 523 54 HOH HOH . M 6 HOH B 24 524 21 HOH HOH . M 6 HOH B 25 525 66 HOH HOH . M 6 HOH B 26 526 87 HOH HOH . M 6 HOH B 27 527 12 HOH HOH . M 6 HOH B 28 528 79 HOH HOH . M 6 HOH B 29 529 6 HOH HOH . M 6 HOH B 30 530 98 HOH HOH . M 6 HOH B 31 531 68 HOH HOH . M 6 HOH B 32 532 20 HOH HOH . M 6 HOH B 33 533 10 HOH HOH . M 6 HOH B 34 534 107 HOH HOH . M 6 HOH B 35 535 80 HOH HOH . M 6 HOH B 36 536 36 HOH HOH . M 6 HOH B 37 537 73 HOH HOH . M 6 HOH B 38 538 7 HOH HOH . M 6 HOH B 39 539 15 HOH HOH . M 6 HOH B 40 540 53 HOH HOH . M 6 HOH B 41 541 64 HOH HOH . M 6 HOH B 42 542 112 HOH HOH . M 6 HOH B 43 543 39 HOH HOH . M 6 HOH B 44 544 75 HOH HOH . M 6 HOH B 45 545 55 HOH HOH . M 6 HOH B 46 546 105 HOH HOH . M 6 HOH B 47 547 96 HOH HOH . M 6 HOH B 48 548 103 HOH HOH . M 6 HOH B 49 549 60 HOH HOH . M 6 HOH B 50 550 24 HOH HOH . M 6 HOH B 51 551 88 HOH HOH . M 6 HOH B 52 552 63 HOH HOH . M 6 HOH B 53 553 42 HOH HOH . M 6 HOH B 54 554 48 HOH HOH . M 6 HOH B 55 555 71 HOH HOH . M 6 HOH B 56 556 57 HOH HOH . M 6 HOH B 57 557 99 HOH HOH . M 6 HOH B 58 558 2 HOH HOH . M 6 HOH B 59 559 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 6.359 _atom_site.Cartn_y -4.551 _atom_site.Cartn_z -11.945 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 805 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #