data_7PD2 # _model_server_result.job_id XloA_JhzwSISnI3MQqYtSA _model_server_result.datetime_utc '2025-01-10 13:50:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":407}' # _entry.id 7PD2 # _exptl.entry_id 7PD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.91 _cell.angle_gamma 90 _cell.entry_id 7PD2 _cell.length_a 175.09 _cell.length_b 49.33 _cell.length_c 85.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,R 1 1 B,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 O N N ? 6 P N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 95 A CYS 85 1_555 C FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A SG CYS 99 A CYS 89 1_555 C FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 102 A CYS 92 1_555 C FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 C FE1 SF4 . A SF4 401 1_555 E N MET . A MET 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc5 C FE1 SF4 . A SF4 401 1_555 E O MET . A MET 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc6 B SG CYS 95 B CYS 85 1_555 K FE3 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 B SG CYS 99 B CYS 89 1_555 K FE2 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc8 B SG CYS 102 B CYS 92 1_555 K FE4 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc9 K FE1 SF4 . B SF4 401 1_555 M N MET . B MET 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc10 K FE1 SF4 . B SF4 401 1_555 M OXT MET . B MET 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 348 n n S O2 SO4 doub 349 n n S O3 SO4 sing 350 n n S O4 SO4 sing 351 n n # _atom_sites.entry_id 7PD2 _atom_sites.fract_transf_matrix[1][1] 0.005711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000692 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 401 451 SF4 FS4 . D 3 5AD A 1 402 601 5AD 5AD . E 4 MET A 1 403 701 MET MET . F 5 GOL A 1 404 801 GOL GOL . G 5 GOL A 1 405 901 GOL GOL . H 6 SO4 A 1 406 1 SO4 SO4 . I 6 SO4 A 1 407 3 SO4 SO4 . J 6 SO4 A 1 408 4 SO4 SO4 . K 2 SF4 B 1 401 451 SF4 FS4 . L 3 5AD B 1 402 601 5AD 5AD . M 4 MET B 1 403 701 MET MET . N 5 GOL B 1 404 801 GOL GOL . O 6 SO4 B 1 405 2 SO4 SO4 . P 6 SO4 B 1 406 5 SO4 SO4 . Q 6 SO4 B 1 407 6 SO4 SO4 . R 7 HOH A 1 501 194 HOH HOH . R 7 HOH A 2 502 101 HOH HOH . R 7 HOH A 3 503 115 HOH HOH . R 7 HOH A 4 504 55 HOH HOH . R 7 HOH A 5 505 116 HOH HOH . R 7 HOH A 6 506 164 HOH HOH . R 7 HOH A 7 507 8 HOH HOH . R 7 HOH A 8 508 40 HOH HOH . R 7 HOH A 9 509 203 HOH HOH . R 7 HOH A 10 510 11 HOH HOH . R 7 HOH A 11 511 63 HOH HOH . R 7 HOH A 12 512 146 HOH HOH . R 7 HOH A 13 513 3 HOH HOH . R 7 HOH A 14 514 200 HOH HOH . R 7 HOH A 15 515 75 HOH HOH . R 7 HOH A 16 516 125 HOH HOH . R 7 HOH A 17 517 25 HOH HOH . R 7 HOH A 18 518 29 HOH HOH . R 7 HOH A 19 519 114 HOH HOH . R 7 HOH A 20 520 143 HOH HOH . R 7 HOH A 21 521 175 HOH HOH . R 7 HOH A 22 522 88 HOH HOH . R 7 HOH A 23 523 100 HOH HOH . R 7 HOH A 24 524 34 HOH HOH . R 7 HOH A 25 525 52 HOH HOH . R 7 HOH A 26 526 199 HOH HOH . R 7 HOH A 27 527 9 HOH HOH . R 7 HOH A 28 528 144 HOH HOH . R 7 HOH A 29 529 57 HOH HOH . R 7 HOH A 30 530 170 HOH HOH . R 7 HOH A 31 531 28 HOH HOH . R 7 HOH A 32 532 35 HOH HOH . R 7 HOH A 33 533 80 HOH HOH . R 7 HOH A 34 534 79 HOH HOH . R 7 HOH A 35 535 211 HOH HOH . R 7 HOH A 36 536 202 HOH HOH . R 7 HOH A 37 537 61 HOH HOH . R 7 HOH A 38 538 16 HOH HOH . R 7 HOH A 39 539 77 HOH HOH . R 7 HOH A 40 540 145 HOH HOH . R 7 HOH A 41 541 190 HOH HOH . R 7 HOH A 42 542 82 HOH HOH . R 7 HOH A 43 543 96 HOH HOH . R 7 HOH A 44 544 105 HOH HOH . R 7 HOH A 45 545 167 HOH HOH . R 7 HOH A 46 546 76 HOH HOH . R 7 HOH A 47 547 58 HOH HOH . R 7 HOH A 48 548 4 HOH HOH . R 7 HOH A 49 549 56 HOH HOH . R 7 HOH A 50 550 60 HOH HOH . R 7 HOH A 51 551 185 HOH HOH . R 7 HOH A 52 552 186 HOH HOH . R 7 HOH A 53 553 108 HOH HOH . R 7 HOH A 54 554 51 HOH HOH . R 7 HOH A 55 555 97 HOH HOH . R 7 HOH A 56 556 48 HOH HOH . R 7 HOH A 57 557 178 HOH HOH . R 7 HOH A 58 558 234 HOH HOH . R 7 HOH A 59 559 65 HOH HOH . R 7 HOH A 60 560 10 HOH HOH . R 7 HOH A 61 561 59 HOH HOH . R 7 HOH A 62 562 20 HOH HOH . R 7 HOH A 63 563 23 HOH HOH . R 7 HOH A 64 564 45 HOH HOH . R 7 HOH A 65 565 148 HOH HOH . R 7 HOH A 66 566 30 HOH HOH . R 7 HOH A 67 567 187 HOH HOH . R 7 HOH A 68 568 220 HOH HOH . R 7 HOH A 69 569 49 HOH HOH . R 7 HOH A 70 570 118 HOH HOH . R 7 HOH A 71 571 180 HOH HOH . R 7 HOH A 72 572 91 HOH HOH . R 7 HOH A 73 573 133 HOH HOH . R 7 HOH A 74 574 106 HOH HOH . R 7 HOH A 75 575 42 HOH HOH . R 7 HOH A 76 576 31 HOH HOH . R 7 HOH A 77 577 36 HOH HOH . R 7 HOH A 78 578 98 HOH HOH . R 7 HOH A 79 579 231 HOH HOH . R 7 HOH A 80 580 109 HOH HOH . R 7 HOH A 81 581 165 HOH HOH . R 7 HOH A 82 582 158 HOH HOH . R 7 HOH A 83 583 39 HOH HOH . R 7 HOH A 84 584 153 HOH HOH . R 7 HOH A 85 585 78 HOH HOH . R 7 HOH A 86 586 168 HOH HOH . R 7 HOH A 87 587 179 HOH HOH . R 7 HOH A 88 588 213 HOH HOH . R 7 HOH A 89 589 155 HOH HOH . R 7 HOH A 90 590 223 HOH HOH . R 7 HOH A 91 591 69 HOH HOH . R 7 HOH A 92 592 169 HOH HOH . R 7 HOH A 93 593 149 HOH HOH . R 7 HOH A 94 594 70 HOH HOH . R 7 HOH A 95 595 197 HOH HOH . R 7 HOH A 96 596 117 HOH HOH . R 7 HOH A 97 597 136 HOH HOH . R 7 HOH A 98 598 192 HOH HOH . R 7 HOH A 99 599 138 HOH HOH . R 7 HOH A 100 600 233 HOH HOH . R 7 HOH A 101 601 183 HOH HOH . R 7 HOH A 102 602 176 HOH HOH . R 7 HOH A 103 603 215 HOH HOH . R 7 HOH A 104 604 207 HOH HOH . R 7 HOH A 105 605 208 HOH HOH . R 7 HOH A 106 606 174 HOH HOH . R 7 HOH A 107 607 156 HOH HOH . R 7 HOH A 108 608 225 HOH HOH . R 7 HOH A 109 609 132 HOH HOH . R 7 HOH A 110 610 229 HOH HOH . R 7 HOH A 111 611 87 HOH HOH . R 7 HOH A 112 612 130 HOH HOH . R 7 HOH A 113 613 230 HOH HOH . R 7 HOH A 114 614 99 HOH HOH . R 7 HOH A 115 615 217 HOH HOH . R 7 HOH A 116 616 247 HOH HOH . R 7 HOH A 117 617 182 HOH HOH . R 7 HOH A 118 618 71 HOH HOH . R 7 HOH A 119 619 221 HOH HOH . R 7 HOH A 120 620 188 HOH HOH . R 7 HOH A 121 621 227 HOH HOH . R 7 HOH A 122 622 218 HOH HOH . R 7 HOH A 123 623 226 HOH HOH . R 7 HOH A 124 624 66 HOH HOH . R 7 HOH A 125 625 216 HOH HOH . R 7 HOH A 126 626 232 HOH HOH . R 7 HOH A 127 627 228 HOH HOH . R 7 HOH A 128 628 235 HOH HOH . R 7 HOH A 129 629 141 HOH HOH . R 7 HOH A 130 630 123 HOH HOH . S 7 HOH B 1 501 127 HOH HOH . S 7 HOH B 2 502 160 HOH HOH . S 7 HOH B 3 503 112 HOH HOH . S 7 HOH B 4 504 181 HOH HOH . S 7 HOH B 5 505 184 HOH HOH . S 7 HOH B 6 506 204 HOH HOH . S 7 HOH B 7 507 113 HOH HOH . S 7 HOH B 8 508 107 HOH HOH . S 7 HOH B 9 509 41 HOH HOH . S 7 HOH B 10 510 15 HOH HOH . S 7 HOH B 11 511 14 HOH HOH . S 7 HOH B 12 512 81 HOH HOH . S 7 HOH B 13 513 93 HOH HOH . S 7 HOH B 14 514 134 HOH HOH . S 7 HOH B 15 515 83 HOH HOH . S 7 HOH B 16 516 142 HOH HOH . S 7 HOH B 17 517 2 HOH HOH . S 7 HOH B 18 518 198 HOH HOH . S 7 HOH B 19 519 137 HOH HOH . S 7 HOH B 20 520 206 HOH HOH . S 7 HOH B 21 521 38 HOH HOH . S 7 HOH B 22 522 37 HOH HOH . S 7 HOH B 23 523 246 HOH HOH . S 7 HOH B 24 524 26 HOH HOH . S 7 HOH B 25 525 104 HOH HOH . S 7 HOH B 26 526 90 HOH HOH . S 7 HOH B 27 527 120 HOH HOH . S 7 HOH B 28 528 5 HOH HOH . S 7 HOH B 29 529 110 HOH HOH . S 7 HOH B 30 530 17 HOH HOH . S 7 HOH B 31 531 128 HOH HOH . S 7 HOH B 32 532 151 HOH HOH . S 7 HOH B 33 533 209 HOH HOH . S 7 HOH B 34 534 19 HOH HOH . S 7 HOH B 35 535 18 HOH HOH . S 7 HOH B 36 536 212 HOH HOH . S 7 HOH B 37 537 172 HOH HOH . S 7 HOH B 38 538 7 HOH HOH . S 7 HOH B 39 539 119 HOH HOH . S 7 HOH B 40 540 152 HOH HOH . S 7 HOH B 41 541 32 HOH HOH . S 7 HOH B 42 542 72 HOH HOH . S 7 HOH B 43 543 74 HOH HOH . S 7 HOH B 44 544 67 HOH HOH . S 7 HOH B 45 545 244 HOH HOH . S 7 HOH B 46 546 53 HOH HOH . S 7 HOH B 47 547 150 HOH HOH . S 7 HOH B 48 548 1 HOH HOH . S 7 HOH B 49 549 54 HOH HOH . S 7 HOH B 50 550 129 HOH HOH . S 7 HOH B 51 551 27 HOH HOH . S 7 HOH B 52 552 189 HOH HOH . S 7 HOH B 53 553 171 HOH HOH . S 7 HOH B 54 554 12 HOH HOH . S 7 HOH B 55 555 92 HOH HOH . S 7 HOH B 56 556 46 HOH HOH . S 7 HOH B 57 557 135 HOH HOH . S 7 HOH B 58 558 6 HOH HOH . S 7 HOH B 59 559 157 HOH HOH . S 7 HOH B 60 560 154 HOH HOH . S 7 HOH B 61 561 195 HOH HOH . S 7 HOH B 62 562 210 HOH HOH . S 7 HOH B 63 563 86 HOH HOH . S 7 HOH B 64 564 111 HOH HOH . S 7 HOH B 65 565 139 HOH HOH . S 7 HOH B 66 566 44 HOH HOH . S 7 HOH B 67 567 95 HOH HOH . S 7 HOH B 68 568 21 HOH HOH . S 7 HOH B 69 569 64 HOH HOH . S 7 HOH B 70 570 24 HOH HOH . S 7 HOH B 71 571 94 HOH HOH . S 7 HOH B 72 572 85 HOH HOH . S 7 HOH B 73 573 50 HOH HOH . S 7 HOH B 74 574 102 HOH HOH . S 7 HOH B 75 575 89 HOH HOH . S 7 HOH B 76 576 22 HOH HOH . S 7 HOH B 77 577 33 HOH HOH . S 7 HOH B 78 578 161 HOH HOH . S 7 HOH B 79 579 124 HOH HOH . S 7 HOH B 80 580 191 HOH HOH . S 7 HOH B 81 581 159 HOH HOH . S 7 HOH B 82 582 131 HOH HOH . S 7 HOH B 83 583 47 HOH HOH . S 7 HOH B 84 584 201 HOH HOH . S 7 HOH B 85 585 173 HOH HOH . S 7 HOH B 86 586 68 HOH HOH . S 7 HOH B 87 587 162 HOH HOH . S 7 HOH B 88 588 177 HOH HOH . S 7 HOH B 89 589 245 HOH HOH . S 7 HOH B 90 590 205 HOH HOH . S 7 HOH B 91 591 219 HOH HOH . S 7 HOH B 92 592 166 HOH HOH . S 7 HOH B 93 593 224 HOH HOH . S 7 HOH B 94 594 84 HOH HOH . S 7 HOH B 95 595 43 HOH HOH . S 7 HOH B 96 596 126 HOH HOH . S 7 HOH B 97 597 242 HOH HOH . S 7 HOH B 98 598 240 HOH HOH . S 7 HOH B 99 599 147 HOH HOH . S 7 HOH B 100 600 140 HOH HOH . S 7 HOH B 101 601 214 HOH HOH . S 7 HOH B 102 602 103 HOH HOH . S 7 HOH B 103 603 241 HOH HOH . S 7 HOH B 104 604 222 HOH HOH . S 7 HOH B 105 605 243 HOH HOH . S 7 HOH B 106 606 236 HOH HOH . S 7 HOH B 107 607 163 HOH HOH . S 7 HOH B 108 608 249 HOH HOH . S 7 HOH B 109 609 250 HOH HOH . S 7 HOH B 110 610 251 HOH HOH . S 7 HOH B 111 611 122 HOH HOH . S 7 HOH B 112 612 248 HOH HOH . S 7 HOH B 113 613 121 HOH HOH . S 7 HOH B 114 614 62 HOH HOH . S 7 HOH B 115 615 237 HOH HOH . S 7 HOH B 116 616 239 HOH HOH . S 7 HOH B 117 617 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 6 18.509 -22.445 52.098 1 101.46 ? S SO4 407 A 1 HETATM 2 O O1 SO4 . . . I 6 18.685 -21.42 51.073 1 101.28 ? O1 SO4 407 A 1 HETATM 3 O O2 SO4 . . . I 6 19.505 -23.495 51.907 1 101.64 ? O2 SO4 407 A 1 HETATM 4 O O3 SO4 . . . I 6 18.684 -21.85 53.421 1 101.37 ? O3 SO4 407 A 1 HETATM 5 O O4 SO4 . . . I 6 17.169 -23.017 51.99 1 101.22 ? O4 SO4 407 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #