data_7PD5 # _model_server_result.job_id p8YPiUs95_lnTmPAooMbZQ _model_server_result.datetime_utc '2025-01-10 08:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7PD5 # _exptl.entry_id 7PD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.24 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PD5 _cell.length_a 100.272 _cell.length_b 100.272 _cell.length_c 123.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall 'I 4bw' _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H19 N O5' _chem_comp.formula_weight 209.24 _chem_comp.id BTB _chem_comp.mon_nstd_flag . _chem_comp.name 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIS-TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BTB sing 70 n n C1 C2 BTB sing 71 n n C1 H11 BTB sing 72 n n C1 H12 BTB sing 73 n n O1 HO1 BTB sing 74 n n C2 C3 BTB sing 75 n n C2 C4 BTB sing 76 n n C2 N BTB sing 77 n n C3 O3 BTB sing 78 n n C3 H31 BTB sing 79 n n C3 H32 BTB sing 80 n n O3 HO3 BTB sing 81 n n C4 O4 BTB sing 82 n n C4 H41 BTB sing 83 n n C4 H42 BTB sing 84 n n O4 HO4 BTB sing 85 n n N C5 BTB sing 86 n n N C7 BTB sing 87 n n C5 C6 BTB sing 88 n n C5 H51 BTB sing 89 n n C5 H52 BTB sing 90 n n C6 O6 BTB sing 91 n n C6 H61 BTB sing 92 n n C6 H62 BTB sing 93 n n O6 HO6 BTB sing 94 n n C7 C8 BTB sing 95 n n C7 H71 BTB sing 96 n n C7 H72 BTB sing 97 n n C8 O8 BTB sing 98 n n C8 H81 BTB sing 99 n n C8 H82 BTB sing 100 n n O8 HO8 BTB sing 101 n n # _atom_sites.entry_id 7PD5 _atom_sites.fract_transf_matrix[1][1] 0.009973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PAB A 1 401 401 PAB PAB . C 3 BTB A 1 402 501 BTB BTB . D 4 CL A 1 403 1 CL CL . E 4 CL A 1 404 2 CL CL . F 4 CL A 1 405 3 CL CL . G 4 CL A 1 406 4 CL CL . H 4 CL A 1 407 5 CL CL . I 5 HOH A 1 501 120 HOH HOH . I 5 HOH A 2 502 115 HOH HOH . I 5 HOH A 3 503 11 HOH HOH . I 5 HOH A 4 504 86 HOH HOH . I 5 HOH A 5 505 109 HOH HOH . I 5 HOH A 6 506 108 HOH HOH . I 5 HOH A 7 507 130 HOH HOH . I 5 HOH A 8 508 83 HOH HOH . I 5 HOH A 9 509 16 HOH HOH . I 5 HOH A 10 510 82 HOH HOH . I 5 HOH A 11 511 79 HOH HOH . I 5 HOH A 12 512 37 HOH HOH . I 5 HOH A 13 513 20 HOH HOH . I 5 HOH A 14 514 96 HOH HOH . I 5 HOH A 15 515 19 HOH HOH . I 5 HOH A 16 516 85 HOH HOH . I 5 HOH A 17 517 2 HOH HOH . I 5 HOH A 18 518 6 HOH HOH . I 5 HOH A 19 519 100 HOH HOH . I 5 HOH A 20 520 104 HOH HOH . I 5 HOH A 21 521 134 HOH HOH . I 5 HOH A 22 522 135 HOH HOH . I 5 HOH A 23 523 87 HOH HOH . I 5 HOH A 24 524 99 HOH HOH . I 5 HOH A 25 525 32 HOH HOH . I 5 HOH A 26 526 7 HOH HOH . I 5 HOH A 27 527 4 HOH HOH . I 5 HOH A 28 528 21 HOH HOH . I 5 HOH A 29 529 95 HOH HOH . I 5 HOH A 30 530 24 HOH HOH . I 5 HOH A 31 531 26 HOH HOH . I 5 HOH A 32 532 28 HOH HOH . I 5 HOH A 33 533 41 HOH HOH . I 5 HOH A 34 534 88 HOH HOH . I 5 HOH A 35 535 81 HOH HOH . I 5 HOH A 36 536 56 HOH HOH . I 5 HOH A 37 537 25 HOH HOH . I 5 HOH A 38 538 101 HOH HOH . I 5 HOH A 39 539 36 HOH HOH . I 5 HOH A 40 540 123 HOH HOH . I 5 HOH A 41 541 8 HOH HOH . I 5 HOH A 42 542 52 HOH HOH . I 5 HOH A 43 543 44 HOH HOH . I 5 HOH A 44 544 3 HOH HOH . I 5 HOH A 45 545 13 HOH HOH . I 5 HOH A 46 546 91 HOH HOH . I 5 HOH A 47 547 89 HOH HOH . I 5 HOH A 48 548 47 HOH HOH . I 5 HOH A 49 549 23 HOH HOH . I 5 HOH A 50 550 27 HOH HOH . I 5 HOH A 51 551 9 HOH HOH . I 5 HOH A 52 552 38 HOH HOH . I 5 HOH A 53 553 22 HOH HOH . I 5 HOH A 54 554 46 HOH HOH . I 5 HOH A 55 555 48 HOH HOH . I 5 HOH A 56 556 14 HOH HOH . I 5 HOH A 57 557 31 HOH HOH . I 5 HOH A 58 558 34 HOH HOH . I 5 HOH A 59 559 65 HOH HOH . I 5 HOH A 60 560 53 HOH HOH . I 5 HOH A 61 561 18 HOH HOH . I 5 HOH A 62 562 102 HOH HOH . I 5 HOH A 63 563 84 HOH HOH . I 5 HOH A 64 564 132 HOH HOH . I 5 HOH A 65 565 133 HOH HOH . I 5 HOH A 66 566 116 HOH HOH . I 5 HOH A 67 567 129 HOH HOH . I 5 HOH A 68 568 131 HOH HOH . I 5 HOH A 69 569 92 HOH HOH . I 5 HOH A 70 570 12 HOH HOH . I 5 HOH A 71 571 77 HOH HOH . I 5 HOH A 72 572 105 HOH HOH . I 5 HOH A 73 573 78 HOH HOH . I 5 HOH A 74 574 94 HOH HOH . I 5 HOH A 75 575 75 HOH HOH . I 5 HOH A 76 576 73 HOH HOH . I 5 HOH A 77 577 43 HOH HOH . I 5 HOH A 78 578 69 HOH HOH . I 5 HOH A 79 579 106 HOH HOH . I 5 HOH A 80 580 98 HOH HOH . I 5 HOH A 81 581 103 HOH HOH . I 5 HOH A 82 582 125 HOH HOH . I 5 HOH A 83 583 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BTB . . . C 3 5.17 -12.866 9.25 0.92 77.63 ? C1 BTB 402 A 1 HETATM 2 O O1 BTB . . . C 3 4.118 -13.558 9.905 0.92 83.77 ? O1 BTB 402 A 1 HETATM 3 C C2 BTB . . . C 3 4.886 -12.686 7.751 0.92 75.14 ? C2 BTB 402 A 1 HETATM 4 C C3 BTB . . . C 3 4.722 -14.076 7.122 0.92 70.98 ? C3 BTB 402 A 1 HETATM 5 O O3 BTB . . . C 3 5.96 -14.772 7.083 0.92 64.8 ? O3 BTB 402 A 1 HETATM 6 C C4 BTB . . . C 3 3.613 -11.853 7.534 0.92 70.95 ? C4 BTB 402 A 1 HETATM 7 O O4 BTB . . . C 3 3.707 -10.548 8.088 0.92 75.67 ? O4 BTB 402 A 1 HETATM 8 N N BTB . . . C 3 6.098 -12.044 7.09 0.92 78.21 ? N BTB 402 A 1 HETATM 9 C C5 BTB . . . C 3 6.967 -11.296 8.047 0.92 80.84 ? C5 BTB 402 A 1 HETATM 10 C C6 BTB . . . C 3 8.394 -11.302 7.574 0.92 77.12 ? C6 BTB 402 A 1 HETATM 11 O O6 BTB . . . C 3 8.789 -12.623 7.24 0.92 76.75 ? O6 BTB 402 A 1 HETATM 12 C C7 BTB . . . C 3 5.791 -11.231 5.869 0.92 77.23 ? C7 BTB 402 A 1 HETATM 13 C C8 BTB . . . C 3 5.948 -11.966 4.56 0.92 68.22 ? C8 BTB 402 A 1 HETATM 14 O O8 BTB . . . C 3 7.292 -12.379 4.365 0.92 66.82 ? O8 BTB 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #