data_7PDT # _model_server_result.job_id lV4jLao3SXafcOF1dHol3Q _model_server_result.datetime_utc '2024-10-25 00:20:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 7PDT # _exptl.entry_id 7PDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.469 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PDT _cell.length_a 63.392 _cell.length_b 68.526 _cell.length_c 109.717 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H27 O4 -1' _chem_comp.formula_weight 379.469 _chem_comp.id BM6 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BMS649 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 BM6 doub 70 n n O2 C1 BM6 sing 71 n n O3 C8 BM6 sing 72 n n O3 C19 BM6 sing 73 n n O4 C8 BM6 sing 74 n n O4 C20 BM6 sing 75 n n C1 C2 BM6 sing 76 n n C2 C3 BM6 doub 77 n y C2 C7 BM6 sing 78 n y C3 C4 BM6 sing 79 n y C3 H3 BM6 sing 80 n n C4 C5 BM6 doub 81 n y C4 H4 BM6 sing 82 n n C5 C6 BM6 sing 83 n y C5 C8 BM6 sing 84 n n C6 C7 BM6 doub 85 n y C6 H6 BM6 sing 86 n n C7 H7 BM6 sing 87 n n C8 C9 BM6 sing 88 n n C9 C10 BM6 doub 89 n y C9 C14 BM6 sing 90 n y C10 C11 BM6 sing 91 n y C10 H10 BM6 sing 92 n n C11 C12 BM6 doub 93 n y C11 H11 BM6 sing 94 n n C12 C13 BM6 sing 95 n y C12 C18 BM6 sing 96 n n C13 C14 BM6 doub 97 n y C13 C15 BM6 sing 98 n n C14 H14 BM6 sing 99 n n C15 C16 BM6 sing 100 n n C15 C21 BM6 sing 101 n n C15 C22 BM6 sing 102 n n C16 C17 BM6 sing 103 n n C16 H161 BM6 sing 104 n n C16 H162 BM6 sing 105 n n C17 C18 BM6 sing 106 n n C17 H171 BM6 sing 107 n n C17 H172 BM6 sing 108 n n C18 C23 BM6 sing 109 n n C18 C24 BM6 sing 110 n n C19 C20 BM6 sing 111 n n C19 H191 BM6 sing 112 n n C19 H192 BM6 sing 113 n n C20 H201 BM6 sing 114 n n C20 H202 BM6 sing 115 n n C21 H211 BM6 sing 116 n n C21 H212 BM6 sing 117 n n C21 H213 BM6 sing 118 n n C22 H221 BM6 sing 119 n n C22 H222 BM6 sing 120 n n C22 H223 BM6 sing 121 n n C23 H231 BM6 sing 122 n n C23 H232 BM6 sing 123 n n C23 H233 BM6 sing 124 n n C24 H241 BM6 sing 125 n n C24 H242 BM6 sing 126 n n C24 H243 BM6 sing 127 n n # _atom_sites.entry_id 7PDT _atom_sites.fract_transf_matrix[1][1] 0.015775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BM6 A 1 501 1 BM6 BM6 . F 3 BM6 B 1 501 1 BM6 BM6 . G 4 HOH A 1 601 6 HOH HOH . G 4 HOH A 2 602 1 HOH HOH . G 4 HOH A 3 603 7 HOH HOH . G 4 HOH A 4 604 5 HOH HOH . H 4 HOH B 1 601 2 HOH HOH . H 4 HOH B 2 602 4 HOH HOH . H 4 HOH B 3 603 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 BM6 . . . F 3 64.736 25.013 42.619 1 75.16 ? O1 BM6 501 B 1 HETATM 2 O O2 BM6 . . . F 3 66.477 25.665 43.84 1 71.3 ? O2 BM6 501 B 1 HETATM 3 O O3 BM6 . . . F 3 62.178 31.383 42.441 1 53.18 ? O3 BM6 501 B 1 HETATM 4 O O4 BM6 . . . F 3 63.963 31.781 41.074 1 59.14 ? O4 BM6 501 B 1 HETATM 5 C C1 BM6 . . . F 3 65.475 25.924 43.188 1 69.6 ? C1 BM6 501 B 1 HETATM 6 C C2 BM6 . . . F 3 65.001 27.322 42.991 1 60.48 ? C2 BM6 501 B 1 HETATM 7 C C3 BM6 . . . F 3 63.65 27.591 42.799 1 59.14 ? C3 BM6 501 B 1 HETATM 8 C C4 BM6 . . . F 3 63.207 28.89 42.625 1 60.77 ? C4 BM6 501 B 1 HETATM 9 C C5 BM6 . . . F 3 64.097 29.958 42.632 1 59.01 ? C5 BM6 501 B 1 HETATM 10 C C6 BM6 . . . F 3 65.447 29.688 42.828 1 60.43 ? C6 BM6 501 B 1 HETATM 11 C C7 BM6 . . . F 3 65.895 28.389 43.003 1 60.06 ? C7 BM6 501 B 1 HETATM 12 C C8 BM6 . . . F 3 63.599 31.374 42.388 1 57.46 ? C8 BM6 501 B 1 HETATM 13 C C9 BM6 . . . F 3 64.143 32.377 43.394 1 57.23 ? C9 BM6 501 B 1 HETATM 14 C C10 BM6 . . . F 3 65.071 33.338 43.013 1 55.65 ? C10 BM6 501 B 1 HETATM 15 C C11 BM6 . . . F 3 65.523 34.284 43.916 1 55.45 ? C11 BM6 501 B 1 HETATM 16 C C12 BM6 . . . F 3 65.062 34.302 45.224 1 57.18 ? C12 BM6 501 B 1 HETATM 17 C C13 BM6 . . . F 3 64.122 33.34 45.631 1 51.04 ? C13 BM6 501 B 1 HETATM 18 C C14 BM6 . . . F 3 63.689 32.393 44.708 1 51.52 ? C14 BM6 501 B 1 HETATM 19 C C15 BM6 . . . F 3 63.516 33.309 47.034 1 46.46 ? C15 BM6 501 B 1 HETATM 20 C C16 BM6 . . . F 3 63.892 34.576 47.818 1 50.57 ? C16 BM6 501 B 1 HETATM 21 C C17 BM6 . . . F 3 65.348 34.985 47.622 1 50.76 ? C17 BM6 501 B 1 HETATM 22 C C18 BM6 . . . F 3 65.601 35.383 46.165 1 53.96 ? C18 BM6 501 B 1 HETATM 23 C C19 BM6 . . . F 3 61.725 32.172 41.351 1 60.15 ? C19 BM6 501 B 1 HETATM 24 C C20 BM6 . . . F 3 62.766 31.953 40.32 1 59.11 ? C20 BM6 501 B 1 HETATM 25 C C21 BM6 . . . F 3 61.992 33.257 46.932 1 47.98 ? C21 BM6 501 B 1 HETATM 26 C C22 BM6 . . . F 3 64.004 32.071 47.798 1 49.5 ? C22 BM6 501 B 1 HETATM 27 C C23 BM6 . . . F 3 67.108 35.573 45.953 1 49.11 ? C23 BM6 501 B 1 HETATM 28 C C24 BM6 . . . F 3 64.898 36.719 45.89 1 51.96 ? C24 BM6 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #