data_7PDY # _model_server_result.job_id b4lpvccZeoDo_lVOO6YT8Q _model_server_result.datetime_utc '2025-02-20 12:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pdy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":201}' # _entry.id 7PDY # _exptl.entry_id 7PDY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7PDY _cell.length_a 238.538 _cell.length_b 238.538 _cell.length_c 76.521 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PDY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,H,I,J,K,L,M,N,O,P,Z,AA 1 1 C,D,Q,R,S,T,U,V,BA,CA 2 1 E,F,G,W,X,Y,DA,EA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 N N N ? 6 P N N ? 6 R N N ? 6 S N N ? 6 V N N ? 6 Y N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG E 201 NAG 3 n G NAG 2 G 2 NAG E 202 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 111 1_555 A SG CYS 166 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 42 B CYS 14 1_555 B SG CYS 106 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 B SG CYS 144 B CYS 116 1_555 B SG CYS 200 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 C SG CYS 110 C CYS 111 1_555 C SG CYS 166 C CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 D SG CYS 42 D CYS 14 1_555 D SG CYS 106 D CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf6 D SG CYS 144 D CYS 116 1_555 D SG CYS 200 D CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf7 E SG CYS 110 E CYS 111 1_555 E SG CYS 166 E CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 F SG CYS 42 F CYS 14 1_555 F SG CYS 106 F CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf9 F SG CYS 144 F CYS 116 1_555 F SG CYS 200 F CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 81 A ASN 82 1_555 H C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 C ND2 ASN 81 C ASN 82 1_555 Q C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 F ND2 ASN 46 F ASN 18 1_555 X C1 NAG . F NAG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 7PDY _atom_sites.fract_transf_matrix[1][1] 0.004192 _atom_sites.fract_transf_matrix[1][2] 0.00242 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 NAG A 1 201 201 NAG NAG . I 5 GOL A 1 202 202 GOL GOL . J 6 ACT A 1 203 203 ACT ACT . K 5 GOL A 1 204 206 GOL GOL . L 7 PEG A 1 205 208 PEG PEG . M 5 GOL B 1 201 205 GOL GOL . N 6 ACT B 1 202 201 ACT ACT . O 7 PEG B 1 203 202 PEG PEG . P 6 ACT B 1 204 207 ACT ACT . Q 4 NAG C 1 201 205 NAG NAG . R 6 ACT C 1 202 207 ACT ACT . S 6 ACT C 1 203 208 ACT ACT . T 5 GOL C 1 204 209 GOL GOL . U 4 NAG D 1 201 206 NAG NAG . V 6 ACT D 1 202 201 ACT ACT . W 5 GOL E 1 201 203 GOL GOL . X 4 NAG F 1 200 200 NAG NAG . Y 6 ACT F 1 201 201 ACT ACT . Z 8 HOH A 1 301 75 HOH HOH . Z 8 HOH A 2 302 76 HOH HOH . Z 8 HOH A 3 303 85 HOH HOH . Z 8 HOH A 4 304 81 HOH HOH . Z 8 HOH A 5 305 32 HOH HOH . Z 8 HOH A 6 306 59 HOH HOH . Z 8 HOH A 7 307 46 HOH HOH . Z 8 HOH A 8 308 77 HOH HOH . Z 8 HOH A 9 309 73 HOH HOH . Z 8 HOH A 10 310 51 HOH HOH . Z 8 HOH A 11 311 45 HOH HOH . Z 8 HOH A 12 312 25 HOH HOH . Z 8 HOH A 13 313 50 HOH HOH . Z 8 HOH A 14 314 35 HOH HOH . Z 8 HOH A 15 315 60 HOH HOH . Z 8 HOH A 16 316 79 HOH HOH . Z 8 HOH A 17 317 65 HOH HOH . Z 8 HOH A 18 318 27 HOH HOH . Z 8 HOH A 19 319 251 HOH HOH . Z 8 HOH A 20 320 3 HOH HOH . Z 8 HOH A 21 321 24 HOH HOH . Z 8 HOH A 22 322 33 HOH HOH . Z 8 HOH A 23 323 37 HOH HOH . Z 8 HOH A 24 324 91 HOH HOH . Z 8 HOH A 25 325 252 HOH HOH . Z 8 HOH A 26 326 21 HOH HOH . Z 8 HOH A 27 327 30 HOH HOH . Z 8 HOH A 28 328 71 HOH HOH . Z 8 HOH A 29 329 40 HOH HOH . Z 8 HOH A 30 330 199 HOH HOH . Z 8 HOH A 31 331 68 HOH HOH . Z 8 HOH A 32 332 83 HOH HOH . Z 8 HOH A 33 333 281 HOH HOH . Z 8 HOH A 34 334 69 HOH HOH . Z 8 HOH A 35 335 84 HOH HOH . Z 8 HOH A 36 336 52 HOH HOH . Z 8 HOH A 37 337 72 HOH HOH . Z 8 HOH A 38 338 254 HOH HOH . Z 8 HOH A 39 339 28 HOH HOH . Z 8 HOH A 40 340 23 HOH HOH . Z 8 HOH A 41 341 5 HOH HOH . Z 8 HOH A 42 342 256 HOH HOH . Z 8 HOH A 43 343 287 HOH HOH . Z 8 HOH A 44 344 143 HOH HOH . AA 8 HOH B 1 301 103 HOH HOH . AA 8 HOH B 2 302 55 HOH HOH . AA 8 HOH B 3 303 74 HOH HOH . AA 8 HOH B 4 304 70 HOH HOH . AA 8 HOH B 5 305 67 HOH HOH . AA 8 HOH B 6 306 96 HOH HOH . AA 8 HOH B 7 307 104 HOH HOH . AA 8 HOH B 8 308 258 HOH HOH . AA 8 HOH B 9 309 4 HOH HOH . AA 8 HOH B 10 310 82 HOH HOH . AA 8 HOH B 11 311 107 HOH HOH . AA 8 HOH B 12 312 116 HOH HOH . AA 8 HOH B 13 313 80 HOH HOH . AA 8 HOH B 14 314 10 HOH HOH . AA 8 HOH B 15 315 100 HOH HOH . AA 8 HOH B 16 316 105 HOH HOH . AA 8 HOH B 17 317 64 HOH HOH . AA 8 HOH B 18 318 260 HOH HOH . AA 8 HOH B 19 319 78 HOH HOH . AA 8 HOH B 20 320 63 HOH HOH . AA 8 HOH B 21 321 114 HOH HOH . AA 8 HOH B 22 322 22 HOH HOH . AA 8 HOH B 23 323 278 HOH HOH . AA 8 HOH B 24 324 262 HOH HOH . AA 8 HOH B 25 325 61 HOH HOH . AA 8 HOH B 26 326 113 HOH HOH . AA 8 HOH B 27 327 1 HOH HOH . AA 8 HOH B 28 328 6 HOH HOH . AA 8 HOH B 29 329 263 HOH HOH . AA 8 HOH B 30 330 66 HOH HOH . AA 8 HOH B 31 331 261 HOH HOH . AA 8 HOH B 32 332 53 HOH HOH . BA 8 HOH C 1 301 151 HOH HOH . BA 8 HOH C 2 302 39 HOH HOH . BA 8 HOH C 3 303 146 HOH HOH . BA 8 HOH C 4 304 166 HOH HOH . BA 8 HOH C 5 305 36 HOH HOH . BA 8 HOH C 6 306 137 HOH HOH . BA 8 HOH C 7 307 264 HOH HOH . BA 8 HOH C 8 308 147 HOH HOH . BA 8 HOH C 9 309 34 HOH HOH . BA 8 HOH C 10 310 149 HOH HOH . BA 8 HOH C 11 311 122 HOH HOH . BA 8 HOH C 12 312 144 HOH HOH . BA 8 HOH C 13 313 42 HOH HOH . BA 8 HOH C 14 314 128 HOH HOH . BA 8 HOH C 15 315 38 HOH HOH . BA 8 HOH C 16 316 164 HOH HOH . BA 8 HOH C 17 317 43 HOH HOH . BA 8 HOH C 18 318 41 HOH HOH . BA 8 HOH C 19 319 250 HOH HOH . BA 8 HOH C 20 320 136 HOH HOH . BA 8 HOH C 21 321 132 HOH HOH . CA 8 HOH D 1 301 176 HOH HOH . CA 8 HOH D 2 302 163 HOH HOH . CA 8 HOH D 3 303 284 HOH HOH . CA 8 HOH D 4 304 169 HOH HOH . CA 8 HOH D 5 305 174 HOH HOH . CA 8 HOH D 6 306 180 HOH HOH . CA 8 HOH D 7 307 170 HOH HOH . CA 8 HOH D 8 308 175 HOH HOH . CA 8 HOH D 9 309 182 HOH HOH . DA 8 HOH E 1 301 198 HOH HOH . DA 8 HOH E 2 302 200 HOH HOH . DA 8 HOH E 3 303 206 HOH HOH . DA 8 HOH E 4 304 208 HOH HOH . DA 8 HOH E 5 305 218 HOH HOH . DA 8 HOH E 6 306 245 HOH HOH . DA 8 HOH E 7 307 12 HOH HOH . DA 8 HOH E 8 308 201 HOH HOH . DA 8 HOH E 9 309 222 HOH HOH . DA 8 HOH E 10 310 193 HOH HOH . DA 8 HOH E 11 311 207 HOH HOH . DA 8 HOH E 12 312 187 HOH HOH . DA 8 HOH E 13 313 158 HOH HOH . DA 8 HOH E 14 314 9 HOH HOH . DA 8 HOH E 15 315 8 HOH HOH . DA 8 HOH E 16 316 186 HOH HOH . DA 8 HOH E 17 317 7 HOH HOH . DA 8 HOH E 18 318 272 HOH HOH . DA 8 HOH E 19 319 179 HOH HOH . DA 8 HOH E 20 320 196 HOH HOH . DA 8 HOH E 21 321 183 HOH HOH . EA 8 HOH F 1 301 18 HOH HOH . EA 8 HOH F 2 302 202 HOH HOH . EA 8 HOH F 3 303 228 HOH HOH . EA 8 HOH F 4 304 185 HOH HOH . EA 8 HOH F 5 305 237 HOH HOH . EA 8 HOH F 6 306 215 HOH HOH . EA 8 HOH F 7 307 19 HOH HOH . EA 8 HOH F 8 308 184 HOH HOH . EA 8 HOH F 9 309 244 HOH HOH . EA 8 HOH F 10 310 231 HOH HOH . EA 8 HOH F 11 311 156 HOH HOH . EA 8 HOH F 12 312 210 HOH HOH . EA 8 HOH F 13 313 234 HOH HOH . EA 8 HOH F 14 314 181 HOH HOH . EA 8 HOH F 15 315 13 HOH HOH . EA 8 HOH F 16 316 288 HOH HOH . EA 8 HOH F 17 317 216 HOH HOH . EA 8 HOH F 18 318 157 HOH HOH . EA 8 HOH F 19 319 242 HOH HOH . EA 8 HOH F 20 320 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . Y 6 3.133 -76.718 50.207 1 91.99 ? C ACT 201 F 1 HETATM 2 O O ACT . . . Y 6 3.868 -77.735 50.241 1 85.12 ? O ACT 201 F 1 HETATM 3 O OXT ACT . . . Y 6 3.575 -75.543 50.378 1 92.84 ? OXT ACT 201 F 1 HETATM 4 C CH3 ACT . . . Y 6 1.613 -76.928 49.929 1 80.3 ? CH3 ACT 201 F 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #