data_7PEM # _model_server_result.job_id '_okOcdFrgorSZ3vVvEmlbQ' _model_server_result.datetime_utc '2024-12-27 03:04:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1403}' # _entry.id 7PEM # _exptl.entry_id 7PEM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PEM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG C 501 NAG 3 n C NAG 2 B 2 NAG C 502 NAG 3 n D NAG 1 D 1 NAG C 505 NAG 3 n D NAG 2 D 2 NAG C 506 NAG 4 n E NAG 1 E 1 NAG C 507 NAG 4 n E NAG 2 E 2 NAG C 508 NAG 4 n E BMA 3 E 3 BMA C 509 BMA 4 n E BMA 4 E 4 BMA C 510 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 80 C CYS 80 1_555 B SG CYS 123 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 176 C CYS 176 1_555 B SG CYS 190 C CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C SER 559 A SER 559 1_555 A N PHD 560 A PHD 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PHD 560 A PHD 560 1_555 A N LYS 561 A LYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B ND2 ASN 199 C ASN 199 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale4 B ND2 ASN 216 C ASN 216 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale5 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 E O3 BMA . E BMA 3 1_555 E C1 BMA . E BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OD2 PHD 560 A PHD 560 1_555 G MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A OP2 PHD 560 A PHD 560 1_555 G MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc3 A O THR 562 A THR 562 1_555 G MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc4 A O ASP 954 A ASP 954 1_555 G MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc5 G MG MG . A MG 1402 1_555 J O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc6 G MG MG . A MG 1402 1_555 J O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PEM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 2Y5 A 1 1401 1301 2Y5 2Y5 . G 6 MG A 1 1402 1501 MG MG . H 7 ATP A 1 1403 1503 ATP ATP . I 8 Q3G A 1 1404 2031 Q3G Q3G . J 9 HOH A 1 1501 1602 HOH HOH . J 9 HOH A 2 1502 1601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 7 121.786 134.664 193.077 1 108.26 ? PG ATP 1403 A 1 HETATM 2 O O1G ATP . . . H 7 120.839 134.753 191.903 1 108.26 ? O1G ATP 1403 A 1 HETATM 3 O O2G ATP . . . H 7 121.681 133.447 193.975 1 108.26 ? O2G ATP 1403 A 1 HETATM 4 O O3G ATP . . . H 7 123.167 135.199 192.752 1 108.26 ? O3G ATP 1403 A 1 HETATM 5 P PB ATP . . . H 7 119.877 136.648 193.376 1 108.26 ? PB ATP 1403 A 1 HETATM 6 O O1B ATP . . . H 7 119.859 137.513 192.15 1 108.26 ? O1B ATP 1403 A 1 HETATM 7 O O2B ATP . . . H 7 118.62 135.925 193.77 1 108.26 ? O2B ATP 1403 A 1 HETATM 8 O O3B ATP . . . H 7 121.248 136.124 193.895 1 108.26 ? O3B ATP 1403 A 1 HETATM 9 P PA ATP . . . H 7 120.47 139.091 194.524 1 108.26 ? PA ATP 1403 A 1 HETATM 10 O O1A ATP . . . H 7 121.39 138.95 195.714 1 108.26 ? O1A ATP 1403 A 1 HETATM 11 O O2A ATP . . . H 7 120.936 139.948 193.379 1 108.26 ? O2A ATP 1403 A 1 HETATM 12 O O3A ATP . . . H 7 119.308 138.091 194.346 1 108.26 ? O3A ATP 1403 A 1 HETATM 13 O O5' ATP . . . H 7 119.682 140.604 195.32 1 108.26 ? O5' ATP 1403 A 1 HETATM 14 C C5' ATP . . . H 7 120.697 141.442 195.576 1 108.26 ? C5' ATP 1403 A 1 HETATM 15 C C4' ATP . . . H 7 120.185 142.755 196.175 1 108.26 ? C4' ATP 1403 A 1 HETATM 16 O O4' ATP . . . H 7 121.198 143.359 196.967 1 108.26 ? O4' ATP 1403 A 1 HETATM 17 C C3' ATP . . . H 7 119.959 143.695 194.963 1 108.26 ? C3' ATP 1403 A 1 HETATM 18 O O3' ATP . . . H 7 118.591 143.901 194.87 1 108.26 ? O3' ATP 1403 A 1 HETATM 19 C C2' ATP . . . H 7 120.713 144.993 195.336 1 108.26 ? C2' ATP 1403 A 1 HETATM 20 O O2' ATP . . . H 7 119.925 146.137 195.253 1 108.26 ? O2' ATP 1403 A 1 HETATM 21 C C1' ATP . . . H 7 121.042 144.737 196.842 1 108.26 ? C1' ATP 1403 A 1 HETATM 22 N N9 ATP . . . H 7 122.336 145.337 197.19 1 108.26 ? N9 ATP 1403 A 1 HETATM 23 C C8 ATP . . . H 7 123.382 145.763 196.333 1 108.26 ? C8 ATP 1403 A 1 HETATM 24 N N7 ATP . . . H 7 124.43 146.267 197.023 1 108.26 ? N7 ATP 1403 A 1 HETATM 25 C C5 ATP . . . H 7 124.05 146.162 198.372 1 108.26 ? C5 ATP 1403 A 1 HETATM 26 C C6 ATP . . . H 7 124.699 146.512 199.575 1 108.26 ? C6 ATP 1403 A 1 HETATM 27 N N6 ATP . . . H 7 125.95 147.072 199.545 1 108.26 ? N6 ATP 1403 A 1 HETATM 28 N N1 ATP . . . H 7 124.095 146.3 200.789 1 108.26 ? N1 ATP 1403 A 1 HETATM 29 C C2 ATP . . . H 7 122.84 145.734 200.738 1 108.26 ? C2 ATP 1403 A 1 HETATM 30 N N3 ATP . . . H 7 122.101 145.352 199.682 1 108.26 ? N3 ATP 1403 A 1 HETATM 31 C C4 ATP . . . H 7 122.752 145.585 198.49 1 108.26 ? C4 ATP 1403 A 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #