data_7PF8 # _model_server_result.job_id b51gtDoPaswGQY_Bw0xwnw _model_server_result.datetime_utc '2024-10-19 13:20:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7PF8 # _exptl.entry_id 7PF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PF8 _cell.length_a 176.85 _cell.length_b 176.85 _cell.length_c 176.85 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -176.85 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -176.85 0 5 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 6 'crystal symmetry operation' 22_545 z,-y-1,x 0 0 1 0 -1 0 1 0 0 0 -176.85 0 7 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 8 'crystal symmetry operation' 24_545 -z,-y-1,-x 0 0 -1 0 -1 0 -1 0 0 0 -176.85 0 9 'crystal symmetry operation' 29_545 z,x-1/2,y+1/2 0 0 1 1 0 0 0 1 0 0 -88.425 88.425 10 'crystal symmetry operation' 30_544 z,-x-1/2,-y-1/2 0 0 1 -1 0 0 0 -1 0 0 -88.425 -88.425 11 'crystal symmetry operation' 31_545 -z,-x-1/2,y+1/2 0 0 -1 -1 0 0 0 1 0 0 -88.425 88.425 12 'crystal symmetry operation' 32_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -88.425 -88.425 13 'crystal symmetry operation' 41_544 x,z-1/2,-y-1/2 1 0 0 0 0 1 0 -1 0 0 -88.425 -88.425 14 'crystal symmetry operation' 42_545 -x,z-1/2,y+1/2 -1 0 0 0 0 1 0 1 0 0 -88.425 88.425 15 'crystal symmetry operation' 43_544 -x,-z-1/2,-y-1/2 -1 0 0 0 0 -1 0 -1 0 0 -88.425 -88.425 16 'crystal symmetry operation' 44_545 x,-z-1/2,y+1/2 1 0 0 0 0 -1 0 1 0 0 -88.425 88.425 17 'crystal symmetry operation' 81_545 y+1/2,z-1/2,x 0 1 0 0 0 1 1 0 0 88.425 -88.425 0 18 'crystal symmetry operation' 82_445 -y-1/2,z-1/2,-x 0 -1 0 0 0 1 -1 0 0 -88.425 -88.425 0 19 'crystal symmetry operation' 83_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 88.425 -88.425 0 20 'crystal symmetry operation' 84_445 -y-1/2,-z-1/2,x 0 -1 0 0 0 -1 1 0 0 -88.425 -88.425 0 21 'crystal symmetry operation' 85_545 y+1/2,x-1/2,-z 0 1 0 1 0 0 0 0 -1 88.425 -88.425 0 22 'crystal symmetry operation' 86_445 -y-1/2,-x-1/2,-z 0 -1 0 -1 0 0 0 0 -1 -88.425 -88.425 0 23 'crystal symmetry operation' 87_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 88.425 -88.425 0 24 'crystal symmetry operation' 88_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -88.425 -88.425 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 49 A GLU 49 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc2 A O GLN 94 A GLN 94 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc3 A OD2 ASP 137 A ASP 137 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc4 A OD2 ASP 137 A ASP 137 1_555 D NA NA . A NA 203 32_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc5 E NA NA . A NA 204 1_555 H O HOH . A HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PF8 _atom_sites.fract_transf_matrix[1][1] 0.005655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 2 NA NA . C 2 NA A 1 202 3 NA NA . D 2 NA A 1 203 4 NA NA . E 2 NA A 1 204 5 NA NA . F 3 CL A 1 205 1 CL CL . G 3 CL A 1 206 2 CL CL . H 4 HOH A 1 301 106 HOH HOH . H 4 HOH A 2 302 41 HOH HOH . H 4 HOH A 3 303 61 HOH HOH . H 4 HOH A 4 304 166 HOH HOH . H 4 HOH A 5 305 96 HOH HOH . H 4 HOH A 6 306 56 HOH HOH . H 4 HOH A 7 307 129 HOH HOH . H 4 HOH A 8 308 121 HOH HOH . H 4 HOH A 9 309 78 HOH HOH . H 4 HOH A 10 310 91 HOH HOH . H 4 HOH A 11 311 85 HOH HOH . H 4 HOH A 12 312 48 HOH HOH . H 4 HOH A 13 313 8 HOH HOH . H 4 HOH A 14 314 49 HOH HOH . H 4 HOH A 15 315 33 HOH HOH . H 4 HOH A 16 316 42 HOH HOH . H 4 HOH A 17 317 71 HOH HOH . H 4 HOH A 18 318 32 HOH HOH . H 4 HOH A 19 319 39 HOH HOH . H 4 HOH A 20 320 139 HOH HOH . H 4 HOH A 21 321 74 HOH HOH . H 4 HOH A 22 322 122 HOH HOH . H 4 HOH A 23 323 34 HOH HOH . H 4 HOH A 24 324 37 HOH HOH . H 4 HOH A 25 325 10 HOH HOH . H 4 HOH A 26 326 18 HOH HOH . H 4 HOH A 27 327 90 HOH HOH . H 4 HOH A 28 328 14 HOH HOH . H 4 HOH A 29 329 16 HOH HOH . H 4 HOH A 30 330 5 HOH HOH . H 4 HOH A 31 331 58 HOH HOH . H 4 HOH A 32 332 103 HOH HOH . H 4 HOH A 33 333 82 HOH HOH . H 4 HOH A 34 334 66 HOH HOH . H 4 HOH A 35 335 36 HOH HOH . H 4 HOH A 36 336 73 HOH HOH . H 4 HOH A 37 337 40 HOH HOH . H 4 HOH A 38 338 72 HOH HOH . H 4 HOH A 39 339 68 HOH HOH . H 4 HOH A 40 340 27 HOH HOH . H 4 HOH A 41 341 46 HOH HOH . H 4 HOH A 42 342 21 HOH HOH . H 4 HOH A 43 343 100 HOH HOH . H 4 HOH A 44 344 99 HOH HOH . H 4 HOH A 45 345 130 HOH HOH . H 4 HOH A 46 346 94 HOH HOH . H 4 HOH A 47 347 112 HOH HOH . H 4 HOH A 48 348 117 HOH HOH . H 4 HOH A 49 349 115 HOH HOH . H 4 HOH A 50 350 161 HOH HOH . H 4 HOH A 51 351 125 HOH HOH . H 4 HOH A 52 352 109 HOH HOH . H 4 HOH A 53 353 81 HOH HOH . H 4 HOH A 54 354 150 HOH HOH . H 4 HOH A 55 355 135 HOH HOH . H 4 HOH A 56 356 131 HOH HOH . H 4 HOH A 57 357 127 HOH HOH . H 4 HOH A 58 358 45 HOH HOH . H 4 HOH A 59 359 9 HOH HOH . H 4 HOH A 60 360 169 HOH HOH . H 4 HOH A 61 361 13 HOH HOH . H 4 HOH A 62 362 26 HOH HOH . H 4 HOH A 63 363 141 HOH HOH . H 4 HOH A 64 364 67 HOH HOH . H 4 HOH A 65 365 43 HOH HOH . H 4 HOH A 66 366 53 HOH HOH . H 4 HOH A 67 367 38 HOH HOH . H 4 HOH A 68 368 92 HOH HOH . H 4 HOH A 69 369 17 HOH HOH . H 4 HOH A 70 370 65 HOH HOH . H 4 HOH A 71 371 128 HOH HOH . H 4 HOH A 72 372 160 HOH HOH . H 4 HOH A 73 373 2 HOH HOH . H 4 HOH A 74 374 148 HOH HOH . H 4 HOH A 75 375 151 HOH HOH . H 4 HOH A 76 376 98 HOH HOH . H 4 HOH A 77 377 87 HOH HOH . H 4 HOH A 78 378 51 HOH HOH . H 4 HOH A 79 379 4 HOH HOH . H 4 HOH A 80 380 107 HOH HOH . H 4 HOH A 81 381 64 HOH HOH . H 4 HOH A 82 382 69 HOH HOH . H 4 HOH A 83 383 124 HOH HOH . H 4 HOH A 84 384 19 HOH HOH . H 4 HOH A 85 385 120 HOH HOH . H 4 HOH A 86 386 76 HOH HOH . H 4 HOH A 87 387 52 HOH HOH . H 4 HOH A 88 388 63 HOH HOH . H 4 HOH A 89 389 84 HOH HOH . H 4 HOH A 90 390 133 HOH HOH . H 4 HOH A 91 391 147 HOH HOH . H 4 HOH A 92 392 158 HOH HOH . H 4 HOH A 93 393 23 HOH HOH . H 4 HOH A 94 394 24 HOH HOH . H 4 HOH A 95 395 149 HOH HOH . H 4 HOH A 96 396 44 HOH HOH . H 4 HOH A 97 397 47 HOH HOH . H 4 HOH A 98 398 57 HOH HOH . H 4 HOH A 99 399 136 HOH HOH . H 4 HOH A 100 400 30 HOH HOH . H 4 HOH A 101 401 1 HOH HOH . H 4 HOH A 102 402 140 HOH HOH . H 4 HOH A 103 403 7 HOH HOH . H 4 HOH A 104 404 105 HOH HOH . H 4 HOH A 105 405 20 HOH HOH . H 4 HOH A 106 406 22 HOH HOH . H 4 HOH A 107 407 62 HOH HOH . H 4 HOH A 108 408 132 HOH HOH . H 4 HOH A 109 409 110 HOH HOH . H 4 HOH A 110 410 25 HOH HOH . H 4 HOH A 111 411 171 HOH HOH . H 4 HOH A 112 412 83 HOH HOH . H 4 HOH A 113 413 15 HOH HOH . H 4 HOH A 114 414 3 HOH HOH . H 4 HOH A 115 415 153 HOH HOH . H 4 HOH A 116 416 155 HOH HOH . H 4 HOH A 117 417 173 HOH HOH . H 4 HOH A 118 418 146 HOH HOH . H 4 HOH A 119 419 116 HOH HOH . H 4 HOH A 120 420 167 HOH HOH . H 4 HOH A 121 421 174 HOH HOH . H 4 HOH A 122 422 168 HOH HOH . H 4 HOH A 123 423 165 HOH HOH . H 4 HOH A 124 424 114 HOH HOH . H 4 HOH A 125 425 138 HOH HOH . H 4 HOH A 126 426 89 HOH HOH . H 4 HOH A 127 427 145 HOH HOH . H 4 HOH A 128 428 164 HOH HOH . H 4 HOH A 129 429 137 HOH HOH . H 4 HOH A 130 430 6 HOH HOH . H 4 HOH A 131 431 159 HOH HOH . H 4 HOH A 132 432 156 HOH HOH . H 4 HOH A 133 433 50 HOH HOH . H 4 HOH A 134 434 31 HOH HOH . H 4 HOH A 135 435 11 HOH HOH . H 4 HOH A 136 436 79 HOH HOH . H 4 HOH A 137 437 88 HOH HOH . H 4 HOH A 138 438 143 HOH HOH . H 4 HOH A 139 439 12 HOH HOH . H 4 HOH A 140 440 108 HOH HOH . H 4 HOH A 141 441 113 HOH HOH . H 4 HOH A 142 442 154 HOH HOH . H 4 HOH A 143 443 163 HOH HOH . H 4 HOH A 144 444 170 HOH HOH . H 4 HOH A 145 445 29 HOH HOH . H 4 HOH A 146 446 59 HOH HOH . H 4 HOH A 147 447 54 HOH HOH . H 4 HOH A 148 448 75 HOH HOH . H 4 HOH A 149 449 162 HOH HOH . H 4 HOH A 150 450 118 HOH HOH . H 4 HOH A 151 451 35 HOH HOH . H 4 HOH A 152 452 60 HOH HOH . H 4 HOH A 153 453 144 HOH HOH . H 4 HOH A 154 454 101 HOH HOH . H 4 HOH A 155 455 70 HOH HOH . H 4 HOH A 156 456 175 HOH HOH . H 4 HOH A 157 457 93 HOH HOH . H 4 HOH A 158 458 119 HOH HOH . H 4 HOH A 159 459 80 HOH HOH . H 4 HOH A 160 460 126 HOH HOH . H 4 HOH A 161 461 123 HOH HOH . H 4 HOH A 162 462 55 HOH HOH . H 4 HOH A 163 463 86 HOH HOH . H 4 HOH A 164 464 97 HOH HOH . H 4 HOH A 165 465 111 HOH HOH . H 4 HOH A 166 466 152 HOH HOH . H 4 HOH A 167 467 95 HOH HOH . H 4 HOH A 168 468 104 HOH HOH . H 4 HOH A 169 469 77 HOH HOH . H 4 HOH A 170 470 28 HOH HOH . H 4 HOH A 171 471 172 HOH HOH . H 4 HOH A 172 472 142 HOH HOH . H 4 HOH A 173 473 102 HOH HOH . H 4 HOH A 174 474 134 HOH HOH . H 4 HOH A 175 475 157 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.611 _atom_site.Cartn_y -39.485 _atom_site.Cartn_z 6.11 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #