data_7PG7 # _model_server_result.job_id d4oUwc0IgLpSZaTGXrU_7g _model_server_result.datetime_utc '2024-11-24 13:37:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7PG7 # _exptl.entry_id 7PG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.076 _cell.angle_gamma 90 _cell.entry_id 7PG7 _cell.length_a 122.835 _cell.length_b 39.692 _cell.length_c 97.977 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -39.969527 0 89.453504 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 7PG7 _atom_sites.fract_transf_matrix[1][1] 0.008141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003638 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH D 1 401 426 SAH SAH . C 3 HOH D 1 501 36 HOH HOH . C 3 HOH D 2 502 145 HOH HOH . C 3 HOH D 3 503 368 HOH HOH . C 3 HOH D 4 504 130 HOH HOH . C 3 HOH D 5 505 59 HOH HOH . C 3 HOH D 6 506 73 HOH HOH . C 3 HOH D 7 507 50 HOH HOH . C 3 HOH D 8 508 28 HOH HOH . C 3 HOH D 9 509 116 HOH HOH . C 3 HOH D 10 510 292 HOH HOH . C 3 HOH D 11 511 60 HOH HOH . C 3 HOH D 12 512 136 HOH HOH . C 3 HOH D 13 513 365 HOH HOH . C 3 HOH D 14 514 141 HOH HOH . C 3 HOH D 15 515 58 HOH HOH . C 3 HOH D 16 516 106 HOH HOH . C 3 HOH D 17 517 271 HOH HOH . C 3 HOH D 18 518 83 HOH HOH . C 3 HOH D 19 519 2 HOH HOH . C 3 HOH D 20 520 150 HOH HOH . C 3 HOH D 21 521 5 HOH HOH . C 3 HOH D 22 522 23 HOH HOH . C 3 HOH D 23 523 228 HOH HOH . C 3 HOH D 24 524 3 HOH HOH . C 3 HOH D 25 525 99 HOH HOH . C 3 HOH D 26 526 118 HOH HOH . C 3 HOH D 27 527 14 HOH HOH . C 3 HOH D 28 528 205 HOH HOH . C 3 HOH D 29 529 95 HOH HOH . C 3 HOH D 30 530 194 HOH HOH . C 3 HOH D 31 531 152 HOH HOH . C 3 HOH D 32 532 76 HOH HOH . C 3 HOH D 33 533 6 HOH HOH . C 3 HOH D 34 534 9 HOH HOH . C 3 HOH D 35 535 71 HOH HOH . C 3 HOH D 36 536 211 HOH HOH . C 3 HOH D 37 537 128 HOH HOH . C 3 HOH D 38 538 91 HOH HOH . C 3 HOH D 39 539 48 HOH HOH . C 3 HOH D 40 540 88 HOH HOH . C 3 HOH D 41 541 40 HOH HOH . C 3 HOH D 42 542 68 HOH HOH . C 3 HOH D 43 543 178 HOH HOH . C 3 HOH D 44 544 27 HOH HOH . C 3 HOH D 45 545 56 HOH HOH . C 3 HOH D 46 546 8 HOH HOH . C 3 HOH D 47 547 84 HOH HOH . C 3 HOH D 48 548 72 HOH HOH . C 3 HOH D 49 549 11 HOH HOH . C 3 HOH D 50 550 38 HOH HOH . C 3 HOH D 51 551 127 HOH HOH . C 3 HOH D 52 552 126 HOH HOH . C 3 HOH D 53 553 208 HOH HOH . C 3 HOH D 54 554 134 HOH HOH . C 3 HOH D 55 555 21 HOH HOH . C 3 HOH D 56 556 12 HOH HOH . C 3 HOH D 57 557 103 HOH HOH . C 3 HOH D 58 558 69 HOH HOH . C 3 HOH D 59 559 111 HOH HOH . C 3 HOH D 60 560 17 HOH HOH . C 3 HOH D 61 561 1 HOH HOH . C 3 HOH D 62 562 43 HOH HOH . C 3 HOH D 63 563 248 HOH HOH . C 3 HOH D 64 564 32 HOH HOH . C 3 HOH D 65 565 81 HOH HOH . C 3 HOH D 66 566 39 HOH HOH . C 3 HOH D 67 567 4 HOH HOH . C 3 HOH D 68 568 336 HOH HOH . C 3 HOH D 69 569 42 HOH HOH . C 3 HOH D 70 570 70 HOH HOH . C 3 HOH D 71 571 209 HOH HOH . C 3 HOH D 72 572 123 HOH HOH . C 3 HOH D 73 573 221 HOH HOH . C 3 HOH D 74 574 119 HOH HOH . C 3 HOH D 75 575 29 HOH HOH . C 3 HOH D 76 576 96 HOH HOH . C 3 HOH D 77 577 62 HOH HOH . C 3 HOH D 78 578 276 HOH HOH . C 3 HOH D 79 579 53 HOH HOH . C 3 HOH D 80 580 144 HOH HOH . C 3 HOH D 81 581 79 HOH HOH . C 3 HOH D 82 582 210 HOH HOH . C 3 HOH D 83 583 10 HOH HOH . C 3 HOH D 84 584 181 HOH HOH . C 3 HOH D 85 585 52 HOH HOH . C 3 HOH D 86 586 90 HOH HOH . C 3 HOH D 87 587 107 HOH HOH . C 3 HOH D 88 588 139 HOH HOH . C 3 HOH D 89 589 190 HOH HOH . C 3 HOH D 90 590 66 HOH HOH . C 3 HOH D 91 591 114 HOH HOH . C 3 HOH D 92 592 22 HOH HOH . C 3 HOH D 93 593 25 HOH HOH . C 3 HOH D 94 594 202 HOH HOH . C 3 HOH D 95 595 184 HOH HOH . C 3 HOH D 96 596 16 HOH HOH . C 3 HOH D 97 597 89 HOH HOH . C 3 HOH D 98 598 41 HOH HOH . C 3 HOH D 99 599 63 HOH HOH . C 3 HOH D 100 600 146 HOH HOH . C 3 HOH D 101 601 80 HOH HOH . C 3 HOH D 102 602 20 HOH HOH . C 3 HOH D 103 603 140 HOH HOH . C 3 HOH D 104 604 108 HOH HOH . C 3 HOH D 105 605 85 HOH HOH . C 3 HOH D 106 606 35 HOH HOH . C 3 HOH D 107 607 187 HOH HOH . C 3 HOH D 108 608 272 HOH HOH . C 3 HOH D 109 609 286 HOH HOH . C 3 HOH D 110 610 312 HOH HOH . C 3 HOH D 111 611 197 HOH HOH . C 3 HOH D 112 612 105 HOH HOH . C 3 HOH D 113 613 307 HOH HOH . C 3 HOH D 114 614 241 HOH HOH . C 3 HOH D 115 615 19 HOH HOH . C 3 HOH D 116 616 7 HOH HOH . C 3 HOH D 117 617 44 HOH HOH . C 3 HOH D 118 618 74 HOH HOH . C 3 HOH D 119 619 112 HOH HOH . C 3 HOH D 120 620 100 HOH HOH . C 3 HOH D 121 621 167 HOH HOH . C 3 HOH D 122 622 113 HOH HOH . C 3 HOH D 123 623 142 HOH HOH . C 3 HOH D 124 624 75 HOH HOH . C 3 HOH D 125 625 109 HOH HOH . C 3 HOH D 126 626 67 HOH HOH . C 3 HOH D 127 627 360 HOH HOH . C 3 HOH D 128 628 304 HOH HOH . C 3 HOH D 129 629 148 HOH HOH . C 3 HOH D 130 630 143 HOH HOH . C 3 HOH D 131 631 183 HOH HOH . C 3 HOH D 132 632 34 HOH HOH . C 3 HOH D 133 633 188 HOH HOH . C 3 HOH D 134 634 303 HOH HOH . C 3 HOH D 135 635 45 HOH HOH . C 3 HOH D 136 636 115 HOH HOH . C 3 HOH D 137 637 231 HOH HOH . C 3 HOH D 138 638 121 HOH HOH . C 3 HOH D 139 639 310 HOH HOH . C 3 HOH D 140 640 26 HOH HOH . C 3 HOH D 141 641 82 HOH HOH . C 3 HOH D 142 642 47 HOH HOH . C 3 HOH D 143 643 24 HOH HOH . C 3 HOH D 144 644 104 HOH HOH . C 3 HOH D 145 645 154 HOH HOH . C 3 HOH D 146 646 55 HOH HOH . C 3 HOH D 147 647 186 HOH HOH . C 3 HOH D 148 648 163 HOH HOH . C 3 HOH D 149 649 122 HOH HOH . C 3 HOH D 150 650 37 HOH HOH . C 3 HOH D 151 651 18 HOH HOH . C 3 HOH D 152 652 13 HOH HOH . C 3 HOH D 153 653 54 HOH HOH . C 3 HOH D 154 654 195 HOH HOH . C 3 HOH D 155 655 57 HOH HOH . C 3 HOH D 156 656 193 HOH HOH . C 3 HOH D 157 657 147 HOH HOH . C 3 HOH D 158 658 226 HOH HOH . C 3 HOH D 159 659 316 HOH HOH . C 3 HOH D 160 660 77 HOH HOH . C 3 HOH D 161 661 149 HOH HOH . C 3 HOH D 162 662 179 HOH HOH . C 3 HOH D 163 663 65 HOH HOH . C 3 HOH D 164 664 230 HOH HOH . C 3 HOH D 165 665 166 HOH HOH . C 3 HOH D 166 666 156 HOH HOH . C 3 HOH D 167 667 61 HOH HOH . C 3 HOH D 168 668 15 HOH HOH . C 3 HOH D 169 669 30 HOH HOH . C 3 HOH D 170 670 97 HOH HOH . C 3 HOH D 171 671 138 HOH HOH . C 3 HOH D 172 672 198 HOH HOH . C 3 HOH D 173 673 98 HOH HOH . C 3 HOH D 174 674 262 HOH HOH . C 3 HOH D 175 675 240 HOH HOH . C 3 HOH D 176 676 102 HOH HOH . C 3 HOH D 177 677 133 HOH HOH . C 3 HOH D 178 678 164 HOH HOH . C 3 HOH D 179 679 311 HOH HOH . C 3 HOH D 180 680 199 HOH HOH . C 3 HOH D 181 681 252 HOH HOH . C 3 HOH D 182 682 170 HOH HOH . C 3 HOH D 183 683 306 HOH HOH . C 3 HOH D 184 684 207 HOH HOH . C 3 HOH D 185 685 191 HOH HOH . C 3 HOH D 186 686 131 HOH HOH . C 3 HOH D 187 687 220 HOH HOH . C 3 HOH D 188 688 204 HOH HOH . C 3 HOH D 189 689 249 HOH HOH . C 3 HOH D 190 690 352 HOH HOH . C 3 HOH D 191 691 51 HOH HOH . C 3 HOH D 192 692 182 HOH HOH . C 3 HOH D 193 693 64 HOH HOH . C 3 HOH D 194 694 324 HOH HOH . C 3 HOH D 195 695 289 HOH HOH . C 3 HOH D 196 696 162 HOH HOH . C 3 HOH D 197 697 120 HOH HOH . C 3 HOH D 198 698 125 HOH HOH . C 3 HOH D 199 699 135 HOH HOH . C 3 HOH D 200 700 93 HOH HOH . C 3 HOH D 201 701 171 HOH HOH . C 3 HOH D 202 702 314 HOH HOH . C 3 HOH D 203 703 261 HOH HOH . C 3 HOH D 204 704 124 HOH HOH . C 3 HOH D 205 705 363 HOH HOH . C 3 HOH D 206 706 86 HOH HOH . C 3 HOH D 207 707 212 HOH HOH . C 3 HOH D 208 708 319 HOH HOH . C 3 HOH D 209 709 137 HOH HOH . C 3 HOH D 210 710 295 HOH HOH . C 3 HOH D 211 711 255 HOH HOH . C 3 HOH D 212 712 216 HOH HOH . C 3 HOH D 213 713 189 HOH HOH . C 3 HOH D 214 714 350 HOH HOH . C 3 HOH D 215 715 206 HOH HOH . C 3 HOH D 216 716 172 HOH HOH . C 3 HOH D 217 717 92 HOH HOH . C 3 HOH D 218 718 129 HOH HOH . C 3 HOH D 219 719 279 HOH HOH . C 3 HOH D 220 720 346 HOH HOH . C 3 HOH D 221 721 177 HOH HOH . C 3 HOH D 222 722 185 HOH HOH . C 3 HOH D 223 723 33 HOH HOH . C 3 HOH D 224 724 254 HOH HOH . C 3 HOH D 225 725 117 HOH HOH . C 3 HOH D 226 726 337 HOH HOH . C 3 HOH D 227 727 298 HOH HOH . C 3 HOH D 228 728 132 HOH HOH . C 3 HOH D 229 729 287 HOH HOH . C 3 HOH D 230 730 215 HOH HOH . C 3 HOH D 231 731 153 HOH HOH . C 3 HOH D 232 732 294 HOH HOH . C 3 HOH D 233 733 323 HOH HOH . C 3 HOH D 234 734 358 HOH HOH . C 3 HOH D 235 735 299 HOH HOH . C 3 HOH D 236 736 213 HOH HOH . C 3 HOH D 237 737 200 HOH HOH . C 3 HOH D 238 738 46 HOH HOH . C 3 HOH D 239 739 168 HOH HOH . C 3 HOH D 240 740 214 HOH HOH . C 3 HOH D 241 741 161 HOH HOH . C 3 HOH D 242 742 31 HOH HOH . C 3 HOH D 243 743 169 HOH HOH . C 3 HOH D 244 744 192 HOH HOH . C 3 HOH D 245 745 340 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -3.013 -15.179 20.09 1 25.19 ? N SAH 401 D 1 HETATM 2 C CA SAH . . . B 2 -4.309 -14.7 20.547 1 26.55 ? CA SAH 401 D 1 HETATM 3 C CB SAH . . . B 2 -4.51 -15.046 22.017 1 30.69 ? CB SAH 401 D 1 HETATM 4 C CG SAH . . . B 2 -5.826 -15.749 22.219 1 31.79 ? CG SAH 401 D 1 HETATM 5 S SD SAH . . . B 2 -6.283 -15.799 23.96 1 30.6 ? SD SAH 401 D 1 HETATM 6 C C SAH . . . B 2 -4.476 -13.198 20.382 1 34.23 ? C SAH 401 D 1 HETATM 7 O O SAH . . . B 2 -3.581 -12.501 19.909 1 32.47 ? O SAH 401 D 1 HETATM 8 O OXT SAH . . . B 2 -5.528 -12.656 20.729 1 40.42 ? OXT SAH 401 D 1 HETATM 9 C C5' SAH . . . B 2 -5.184 -17.166 24.419 1 25.24 ? C5' SAH 401 D 1 HETATM 10 C C4' SAH . . . B 2 -5.357 -18.4 23.516 1 24.56 ? C4' SAH 401 D 1 HETATM 11 O O4' SAH . . . B 2 -4.633 -19.481 24.097 1 22.4 ? O4' SAH 401 D 1 HETATM 12 C C3' SAH . . . B 2 -6.805 -18.881 23.406 1 20.53 ? C3' SAH 401 D 1 HETATM 13 O O3' SAH . . . B 2 -7.193 -18.936 22.042 1 23.56 ? O3' SAH 401 D 1 HETATM 14 C C2' SAH . . . B 2 -6.781 -20.265 24.049 1 20.98 ? C2' SAH 401 D 1 HETATM 15 O O2' SAH . . . B 2 -7.675 -21.212 23.509 1 23.32 ? O2' SAH 401 D 1 HETATM 16 C C1' SAH . . . B 2 -5.347 -20.672 23.792 1 21.21 ? C1' SAH 401 D 1 HETATM 17 N N9 SAH . . . B 2 -4.898 -21.759 24.65 1 21.35 ? N9 SAH 401 D 1 HETATM 18 C C8 SAH . . . B 2 -5.018 -21.819 26.024 1 21.39 ? C8 SAH 401 D 1 HETATM 19 N N7 SAH . . . B 2 -4.474 -22.976 26.448 1 23.42 ? N7 SAH 401 D 1 HETATM 20 C C5 SAH . . . B 2 -4.001 -23.649 25.365 1 21.44 ? C5 SAH 401 D 1 HETATM 21 C C6 SAH . . . B 2 -3.313 -24.849 25.215 1 22.77 ? C6 SAH 401 D 1 HETATM 22 N N6 SAH . . . B 2 -3.03 -25.611 26.279 1 25.65 ? N6 SAH 401 D 1 HETATM 23 N N1 SAH . . . B 2 -2.95 -25.245 23.954 1 22.02 ? N1 SAH 401 D 1 HETATM 24 C C2 SAH . . . B 2 -3.231 -24.476 22.837 1 21.15 ? C2 SAH 401 D 1 HETATM 25 N N3 SAH . . . B 2 -3.882 -23.277 22.99 1 20.65 ? N3 SAH 401 D 1 HETATM 26 C C4 SAH . . . B 2 -4.257 -22.885 24.233 1 21.74 ? C4 SAH 401 D 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #