data_7PGA
#
_model_server_result.job_id            WJUTpy4CqKT4r4n2SwvHJg 
_model_server_result.datetime_utc      '2024-11-24 11:47:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pga 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    7PGA 
#
_exptl.entry_id    7PGA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.23 
_cell.angle_gamma         90 
_cell.entry_id            7PGA 
_cell.length_a            60.47 
_cell.length_b            102.64 
_cell.length_c            121.85 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PGA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     7PGA 
_atom_sites.fract_transf_matrix[1][1]    0.016537 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002392 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009743 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAH A 1 401 401 SAH SAH . 
F 3 VAK A 1 402 402 VAK VAK . 
G 2 SAH B 1 401 401 SAH SAH . 
H 3 VAK B 1 402 402 VAK VAK . 
I 2 SAH C 1 401 401 SAH SAH . 
J 3 VAK C 1 402 402 VAK VAK . 
K 2 SAH D 1 401 401 SAH SAH . 
L 3 VAK D 1 402 402 VAK VAK . 
M 4 HOH A 1 501 150 HOH HOH . 
M 4 HOH A 2 502 79 HOH HOH . 
M 4 HOH A 3 503 2 HOH HOH . 
M 4 HOH A 4 504 28 HOH HOH . 
M 4 HOH A 5 505 95 HOH HOH . 
M 4 HOH A 6 506 7 HOH HOH . 
M 4 HOH A 7 507 72 HOH HOH . 
M 4 HOH A 8 508 50 HOH HOH . 
M 4 HOH A 9 509 89 HOH HOH . 
M 4 HOH A 10 510 5 HOH HOH . 
M 4 HOH A 11 511 68 HOH HOH . 
M 4 HOH A 12 512 4 HOH HOH . 
M 4 HOH A 13 513 148 HOH HOH . 
M 4 HOH A 14 514 105 HOH HOH . 
M 4 HOH A 15 515 25 HOH HOH . 
M 4 HOH A 16 516 54 HOH HOH . 
M 4 HOH A 17 517 18 HOH HOH . 
M 4 HOH A 18 518 6 HOH HOH . 
M 4 HOH A 19 519 125 HOH HOH . 
M 4 HOH A 20 520 136 HOH HOH . 
M 4 HOH A 21 521 3 HOH HOH . 
M 4 HOH A 22 522 13 HOH HOH . 
M 4 HOH A 23 523 74 HOH HOH . 
M 4 HOH A 24 524 111 HOH HOH . 
M 4 HOH A 25 525 126 HOH HOH . 
M 4 HOH A 26 526 51 HOH HOH . 
M 4 HOH A 27 527 85 HOH HOH . 
M 4 HOH A 28 528 141 HOH HOH . 
M 4 HOH A 29 529 15 HOH HOH . 
M 4 HOH A 30 530 117 HOH HOH . 
M 4 HOH A 31 531 109 HOH HOH . 
M 4 HOH A 32 532 1 HOH HOH . 
M 4 HOH A 33 533 91 HOH HOH . 
M 4 HOH A 34 534 69 HOH HOH . 
M 4 HOH A 35 535 118 HOH HOH . 
M 4 HOH A 36 536 73 HOH HOH . 
M 4 HOH A 37 537 81 HOH HOH . 
M 4 HOH A 38 538 115 HOH HOH . 
M 4 HOH A 39 539 144 HOH HOH . 
M 4 HOH A 40 540 120 HOH HOH . 
M 4 HOH A 41 541 46 HOH HOH . 
M 4 HOH A 42 542 80 HOH HOH . 
M 4 HOH A 43 543 75 HOH HOH . 
N 4 HOH B 1 501 63 HOH HOH . 
N 4 HOH B 2 502 53 HOH HOH . 
N 4 HOH B 3 503 149 HOH HOH . 
N 4 HOH B 4 504 38 HOH HOH . 
N 4 HOH B 5 505 8 HOH HOH . 
N 4 HOH B 6 506 110 HOH HOH . 
N 4 HOH B 7 507 88 HOH HOH . 
N 4 HOH B 8 508 97 HOH HOH . 
N 4 HOH B 9 509 135 HOH HOH . 
N 4 HOH B 10 510 100 HOH HOH . 
N 4 HOH B 11 511 44 HOH HOH . 
N 4 HOH B 12 512 82 HOH HOH . 
N 4 HOH B 13 513 130 HOH HOH . 
N 4 HOH B 14 514 107 HOH HOH . 
N 4 HOH B 15 515 56 HOH HOH . 
N 4 HOH B 16 516 16 HOH HOH . 
N 4 HOH B 17 517 70 HOH HOH . 
N 4 HOH B 18 518 129 HOH HOH . 
N 4 HOH B 19 519 86 HOH HOH . 
N 4 HOH B 20 520 14 HOH HOH . 
N 4 HOH B 21 521 124 HOH HOH . 
N 4 HOH B 22 522 76 HOH HOH . 
N 4 HOH B 23 523 145 HOH HOH . 
N 4 HOH B 24 524 98 HOH HOH . 
N 4 HOH B 25 525 143 HOH HOH . 
N 4 HOH B 26 526 77 HOH HOH . 
N 4 HOH B 27 527 71 HOH HOH . 
N 4 HOH B 28 528 112 HOH HOH . 
N 4 HOH B 29 529 47 HOH HOH . 
N 4 HOH B 30 530 140 HOH HOH . 
N 4 HOH B 31 531 108 HOH HOH . 
N 4 HOH B 32 532 151 HOH HOH . 
N 4 HOH B 33 533 106 HOH HOH . 
N 4 HOH B 34 534 139 HOH HOH . 
N 4 HOH B 35 535 134 HOH HOH . 
N 4 HOH B 36 536 87 HOH HOH . 
N 4 HOH B 37 537 84 HOH HOH . 
N 4 HOH B 38 538 62 HOH HOH . 
N 4 HOH B 39 539 59 HOH HOH . 
O 4 HOH C 1 501 48 HOH HOH . 
O 4 HOH C 2 502 34 HOH HOH . 
O 4 HOH C 3 503 119 HOH HOH . 
O 4 HOH C 4 504 11 HOH HOH . 
O 4 HOH C 5 505 19 HOH HOH . 
O 4 HOH C 6 506 49 HOH HOH . 
O 4 HOH C 7 507 10 HOH HOH . 
O 4 HOH C 8 508 96 HOH HOH . 
O 4 HOH C 9 509 23 HOH HOH . 
O 4 HOH C 10 510 9 HOH HOH . 
O 4 HOH C 11 511 20 HOH HOH . 
O 4 HOH C 12 512 83 HOH HOH . 
O 4 HOH C 13 513 132 HOH HOH . 
O 4 HOH C 14 514 131 HOH HOH . 
O 4 HOH C 15 515 39 HOH HOH . 
O 4 HOH C 16 516 137 HOH HOH . 
O 4 HOH C 17 517 43 HOH HOH . 
O 4 HOH C 18 518 78 HOH HOH . 
O 4 HOH C 19 519 31 HOH HOH . 
O 4 HOH C 20 520 17 HOH HOH . 
O 4 HOH C 21 521 64 HOH HOH . 
O 4 HOH C 22 522 67 HOH HOH . 
O 4 HOH C 23 523 94 HOH HOH . 
O 4 HOH C 24 524 114 HOH HOH . 
O 4 HOH C 25 525 90 HOH HOH . 
P 4 HOH D 1 501 61 HOH HOH . 
P 4 HOH D 2 502 52 HOH HOH . 
P 4 HOH D 3 503 27 HOH HOH . 
P 4 HOH D 4 504 33 HOH HOH . 
P 4 HOH D 5 505 40 HOH HOH . 
P 4 HOH D 6 506 60 HOH HOH . 
P 4 HOH D 7 507 29 HOH HOH . 
P 4 HOH D 8 508 142 HOH HOH . 
P 4 HOH D 9 509 55 HOH HOH . 
P 4 HOH D 10 510 12 HOH HOH . 
P 4 HOH D 11 511 22 HOH HOH . 
P 4 HOH D 12 512 37 HOH HOH . 
P 4 HOH D 13 513 41 HOH HOH . 
P 4 HOH D 14 514 127 HOH HOH . 
P 4 HOH D 15 515 35 HOH HOH . 
P 4 HOH D 16 516 32 HOH HOH . 
P 4 HOH D 17 517 45 HOH HOH . 
P 4 HOH D 18 518 123 HOH HOH . 
P 4 HOH D 19 519 57 HOH HOH . 
P 4 HOH D 20 520 36 HOH HOH . 
P 4 HOH D 21 521 58 HOH HOH . 
P 4 HOH D 22 522 113 HOH HOH . 
P 4 HOH D 23 523 102 HOH HOH . 
P 4 HOH D 24 524 133 HOH HOH . 
P 4 HOH D 25 525 92 HOH HOH . 
P 4 HOH D 26 526 26 HOH HOH . 
P 4 HOH D 27 527 103 HOH HOH . 
P 4 HOH D 28 528 93 HOH HOH . 
P 4 HOH D 29 529 30 HOH HOH . 
P 4 HOH D 30 530 146 HOH HOH . 
P 4 HOH D 31 531 101 HOH HOH . 
P 4 HOH D 32 532 122 HOH HOH . 
P 4 HOH D 33 533 65 HOH HOH . 
P 4 HOH D 34 534 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . E 2 -1.788 22.411 11.443 1 11.77 ? N SAH 401 A 1 
HETATM 2 C CA SAH . . . E 2 -2.133 21.022 11.728 1 16.22 ? CA SAH 401 A 1 
HETATM 3 C CB SAH . . . E 2 -1.322 20.068 10.849 1 12.08 ? CB SAH 401 A 1 
HETATM 4 C CG SAH . . . E 2 0.124 20.472 10.577 1 12.2 ? CG SAH 401 A 1 
HETATM 5 S SD SAH . . . E 2 1.027 19.179 9.683 1 11.25 ? SD SAH 401 A 1 
HETATM 6 C C SAH . . . E 2 -1.927 20.699 13.206 1 16.45 ? C SAH 401 A 1 
HETATM 7 O O SAH . . . E 2 -2.19 19.58 13.645 1 18.74 ? O SAH 401 A 1 
HETATM 8 O OXT SAH . . . E 2 -1.505 21.541 13.998 1 13.34 ? OXT SAH 401 A 1 
HETATM 9 C C5' SAH . . . E 2 1.602 20.332 8.416 1 11.78 ? C5' SAH 401 A 1 
HETATM 10 C C4' SAH . . . E 2 0.511 20.635 7.398 1 13.32 ? C4' SAH 401 A 1 
HETATM 11 O O4' SAH . . . E 2 0.974 21.55 6.427 1 12.34 ? O4' SAH 401 A 1 
HETATM 12 C C3' SAH . . . E 2 0.044 19.393 6.654 1 9.41 ? C3' SAH 401 A 1 
HETATM 13 O O3' SAH . . . E 2 -1.311 19.161 6.96 1 12.24 ? O3' SAH 401 A 1 
HETATM 14 C C2' SAH . . . E 2 0.181 19.731 5.183 1 10.3 ? C2' SAH 401 A 1 
HETATM 15 O O2' SAH . . . E 2 -0.985 19.386 4.474 1 13.93 ? O2' SAH 401 A 1 
HETATM 16 C C1' SAH . . . E 2 0.369 21.235 5.189 1 11.23 ? C1' SAH 401 A 1 
HETATM 17 N N9 SAH . . . E 2 1.2 21.719 4.079 1 11.35 ? N9 SAH 401 A 1 
HETATM 18 C C8 SAH . . . E 2 2.451 21.288 3.725 1 10.43 ? C8 SAH 401 A 1 
HETATM 19 N N7 SAH . . . E 2 2.859 22.009 2.655 1 15.94 ? N7 SAH 401 A 1 
HETATM 20 C C5 SAH . . . E 2 1.885 22.888 2.327 1 11.05 ? C5 SAH 401 A 1 
HETATM 21 C C6 SAH . . . E 2 1.787 23.847 1.333 1 8.53 ? C6 SAH 401 A 1 
HETATM 22 N N6 SAH . . . E 2 2.785 24.02 0.475 1 8.16 ? N6 SAH 401 A 1 
HETATM 23 N N1 SAH . . . E 2 0.649 24.617 1.24 1 17.67 ? N1 SAH 401 A 1 
HETATM 24 C C2 SAH . . . E 2 -0.382 24.428 2.134 1 12.59 ? C2 SAH 401 A 1 
HETATM 25 N N3 SAH . . . E 2 -0.275 23.475 3.123 1 8.72 ? N3 SAH 401 A 1 
HETATM 26 C C4 SAH . . . E 2 0.84 22.717 3.217 1 10.28 ? C4 SAH 401 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#