data_7PGA
#
_model_server_result.job_id            inCYS-BQYZm4xYqE7TbG3Q 
_model_server_result.datetime_utc      '2024-11-28 05:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pga 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    7PGA 
#
_exptl.entry_id    7PGA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              412.389 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl (1R,2R,4S)-2-ethyl-2,4,5,7-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.23 
_cell.angle_gamma         90 
_cell.entry_id            7PGA 
_cell.length_a            60.47 
_cell.length_b            102.64 
_cell.length_c            121.85 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PGA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C22 H20 O8' 
_chem_comp.formula_weight    412.389 
_chem_comp.id                VAK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl (1R,2R,4S)-2-ethyl-2,4,5,7-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Aklavinone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C1 VAK doub 406 n y 
C1 C2 VAK sing 407 n y 
C1 H1 VAK sing 408 n n 
C3 C2 VAK doub 409 n y 
C2 H2 VAK sing 410 n n 
C4 C3 VAK sing 411 n y 
C3 H3 VAK sing 412 n n 
C16 C4 VAK doub 413 n y 
O19 C4 VAK sing 414 n n 
C17 C5 VAK sing 415 n n 
O20 C5 VAK doub 416 n n 
C5 C16 VAK sing 417 n n 
C20 C6 VAK doub 418 n y 
O21 C6 VAK sing 419 n n 
C6 C17 VAK sing 420 n y 
C8 C7 VAK sing 421 n n 
C7 O22 VAK sing 422 n n 
C7 C20 VAK sing 423 n n 
C7 H7 VAK sing 424 n n 
C8 C9 VAK sing 425 n n 
C8 H8 VAK sing 426 n n 
C8 H8A VAK sing 427 n n 
C13 C9 VAK sing 428 n n 
C9 O23 VAK sing 429 n n 
C9 C10 VAK sing 430 n n 
C14 C10 VAK sing 431 n n 
C10 C19 VAK sing 432 n n 
C10 H10 VAK sing 433 n n 
C19 C11 VAK doub 434 n y 
C11 C18 VAK sing 435 n y 
C11 H11 VAK sing 436 n n 
C18 C12 VAK sing 437 n n 
C12 O18 VAK doub 438 n n 
C12 C21 VAK sing 439 n n 
C22 C13 VAK sing 440 n n 
C13 H13 VAK sing 441 n n 
C13 H13A VAK sing 442 n n 
O17 C14 VAK doub 443 n n 
C14 O16 VAK sing 444 n n 
C15 O16 VAK sing 445 n n 
C15 H15 VAK sing 446 n n 
C15 H15A VAK sing 447 n n 
C15 H15B VAK sing 448 n n 
C16 C21 VAK sing 449 n y 
C17 C18 VAK doub 450 n y 
C20 C19 VAK sing 451 n y 
O19 HO19 VAK sing 452 n n 
O21 HO21 VAK sing 453 n n 
C22 H22 VAK sing 454 n n 
C22 H22A VAK sing 455 n n 
C22 H22B VAK sing 456 n n 
O22 HO22 VAK sing 457 n n 
O23 HO23 VAK sing 458 n n 
#
_atom_sites.entry_id                     7PGA 
_atom_sites.fract_transf_matrix[1][1]    0.016537 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002392 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009743 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAH A 1 401 401 SAH SAH . 
F 3 VAK A 1 402 402 VAK VAK . 
G 2 SAH B 1 401 401 SAH SAH . 
H 3 VAK B 1 402 402 VAK VAK . 
I 2 SAH C 1 401 401 SAH SAH . 
J 3 VAK C 1 402 402 VAK VAK . 
K 2 SAH D 1 401 401 SAH SAH . 
L 3 VAK D 1 402 402 VAK VAK . 
M 4 HOH A 1 501 150 HOH HOH . 
M 4 HOH A 2 502 79 HOH HOH . 
M 4 HOH A 3 503 2 HOH HOH . 
M 4 HOH A 4 504 28 HOH HOH . 
M 4 HOH A 5 505 95 HOH HOH . 
M 4 HOH A 6 506 7 HOH HOH . 
M 4 HOH A 7 507 72 HOH HOH . 
M 4 HOH A 8 508 50 HOH HOH . 
M 4 HOH A 9 509 89 HOH HOH . 
M 4 HOH A 10 510 5 HOH HOH . 
M 4 HOH A 11 511 68 HOH HOH . 
M 4 HOH A 12 512 4 HOH HOH . 
M 4 HOH A 13 513 148 HOH HOH . 
M 4 HOH A 14 514 105 HOH HOH . 
M 4 HOH A 15 515 25 HOH HOH . 
M 4 HOH A 16 516 54 HOH HOH . 
M 4 HOH A 17 517 18 HOH HOH . 
M 4 HOH A 18 518 6 HOH HOH . 
M 4 HOH A 19 519 125 HOH HOH . 
M 4 HOH A 20 520 136 HOH HOH . 
M 4 HOH A 21 521 3 HOH HOH . 
M 4 HOH A 22 522 13 HOH HOH . 
M 4 HOH A 23 523 74 HOH HOH . 
M 4 HOH A 24 524 111 HOH HOH . 
M 4 HOH A 25 525 126 HOH HOH . 
M 4 HOH A 26 526 51 HOH HOH . 
M 4 HOH A 27 527 85 HOH HOH . 
M 4 HOH A 28 528 141 HOH HOH . 
M 4 HOH A 29 529 15 HOH HOH . 
M 4 HOH A 30 530 117 HOH HOH . 
M 4 HOH A 31 531 109 HOH HOH . 
M 4 HOH A 32 532 1 HOH HOH . 
M 4 HOH A 33 533 91 HOH HOH . 
M 4 HOH A 34 534 69 HOH HOH . 
M 4 HOH A 35 535 118 HOH HOH . 
M 4 HOH A 36 536 73 HOH HOH . 
M 4 HOH A 37 537 81 HOH HOH . 
M 4 HOH A 38 538 115 HOH HOH . 
M 4 HOH A 39 539 144 HOH HOH . 
M 4 HOH A 40 540 120 HOH HOH . 
M 4 HOH A 41 541 46 HOH HOH . 
M 4 HOH A 42 542 80 HOH HOH . 
M 4 HOH A 43 543 75 HOH HOH . 
N 4 HOH B 1 501 63 HOH HOH . 
N 4 HOH B 2 502 53 HOH HOH . 
N 4 HOH B 3 503 149 HOH HOH . 
N 4 HOH B 4 504 38 HOH HOH . 
N 4 HOH B 5 505 8 HOH HOH . 
N 4 HOH B 6 506 110 HOH HOH . 
N 4 HOH B 7 507 88 HOH HOH . 
N 4 HOH B 8 508 97 HOH HOH . 
N 4 HOH B 9 509 135 HOH HOH . 
N 4 HOH B 10 510 100 HOH HOH . 
N 4 HOH B 11 511 44 HOH HOH . 
N 4 HOH B 12 512 82 HOH HOH . 
N 4 HOH B 13 513 130 HOH HOH . 
N 4 HOH B 14 514 107 HOH HOH . 
N 4 HOH B 15 515 56 HOH HOH . 
N 4 HOH B 16 516 16 HOH HOH . 
N 4 HOH B 17 517 70 HOH HOH . 
N 4 HOH B 18 518 129 HOH HOH . 
N 4 HOH B 19 519 86 HOH HOH . 
N 4 HOH B 20 520 14 HOH HOH . 
N 4 HOH B 21 521 124 HOH HOH . 
N 4 HOH B 22 522 76 HOH HOH . 
N 4 HOH B 23 523 145 HOH HOH . 
N 4 HOH B 24 524 98 HOH HOH . 
N 4 HOH B 25 525 143 HOH HOH . 
N 4 HOH B 26 526 77 HOH HOH . 
N 4 HOH B 27 527 71 HOH HOH . 
N 4 HOH B 28 528 112 HOH HOH . 
N 4 HOH B 29 529 47 HOH HOH . 
N 4 HOH B 30 530 140 HOH HOH . 
N 4 HOH B 31 531 108 HOH HOH . 
N 4 HOH B 32 532 151 HOH HOH . 
N 4 HOH B 33 533 106 HOH HOH . 
N 4 HOH B 34 534 139 HOH HOH . 
N 4 HOH B 35 535 134 HOH HOH . 
N 4 HOH B 36 536 87 HOH HOH . 
N 4 HOH B 37 537 84 HOH HOH . 
N 4 HOH B 38 538 62 HOH HOH . 
N 4 HOH B 39 539 59 HOH HOH . 
O 4 HOH C 1 501 48 HOH HOH . 
O 4 HOH C 2 502 34 HOH HOH . 
O 4 HOH C 3 503 119 HOH HOH . 
O 4 HOH C 4 504 11 HOH HOH . 
O 4 HOH C 5 505 19 HOH HOH . 
O 4 HOH C 6 506 49 HOH HOH . 
O 4 HOH C 7 507 10 HOH HOH . 
O 4 HOH C 8 508 96 HOH HOH . 
O 4 HOH C 9 509 23 HOH HOH . 
O 4 HOH C 10 510 9 HOH HOH . 
O 4 HOH C 11 511 20 HOH HOH . 
O 4 HOH C 12 512 83 HOH HOH . 
O 4 HOH C 13 513 132 HOH HOH . 
O 4 HOH C 14 514 131 HOH HOH . 
O 4 HOH C 15 515 39 HOH HOH . 
O 4 HOH C 16 516 137 HOH HOH . 
O 4 HOH C 17 517 43 HOH HOH . 
O 4 HOH C 18 518 78 HOH HOH . 
O 4 HOH C 19 519 31 HOH HOH . 
O 4 HOH C 20 520 17 HOH HOH . 
O 4 HOH C 21 521 64 HOH HOH . 
O 4 HOH C 22 522 67 HOH HOH . 
O 4 HOH C 23 523 94 HOH HOH . 
O 4 HOH C 24 524 114 HOH HOH . 
O 4 HOH C 25 525 90 HOH HOH . 
P 4 HOH D 1 501 61 HOH HOH . 
P 4 HOH D 2 502 52 HOH HOH . 
P 4 HOH D 3 503 27 HOH HOH . 
P 4 HOH D 4 504 33 HOH HOH . 
P 4 HOH D 5 505 40 HOH HOH . 
P 4 HOH D 6 506 60 HOH HOH . 
P 4 HOH D 7 507 29 HOH HOH . 
P 4 HOH D 8 508 142 HOH HOH . 
P 4 HOH D 9 509 55 HOH HOH . 
P 4 HOH D 10 510 12 HOH HOH . 
P 4 HOH D 11 511 22 HOH HOH . 
P 4 HOH D 12 512 37 HOH HOH . 
P 4 HOH D 13 513 41 HOH HOH . 
P 4 HOH D 14 514 127 HOH HOH . 
P 4 HOH D 15 515 35 HOH HOH . 
P 4 HOH D 16 516 32 HOH HOH . 
P 4 HOH D 17 517 45 HOH HOH . 
P 4 HOH D 18 518 123 HOH HOH . 
P 4 HOH D 19 519 57 HOH HOH . 
P 4 HOH D 20 520 36 HOH HOH . 
P 4 HOH D 21 521 58 HOH HOH . 
P 4 HOH D 22 522 113 HOH HOH . 
P 4 HOH D 23 523 102 HOH HOH . 
P 4 HOH D 24 524 133 HOH HOH . 
P 4 HOH D 25 525 92 HOH HOH . 
P 4 HOH D 26 526 26 HOH HOH . 
P 4 HOH D 27 527 103 HOH HOH . 
P 4 HOH D 28 528 93 HOH HOH . 
P 4 HOH D 29 529 30 HOH HOH . 
P 4 HOH D 30 530 146 HOH HOH . 
P 4 HOH D 31 531 101 HOH HOH . 
P 4 HOH D 32 532 122 HOH HOH . 
P 4 HOH D 33 533 65 HOH HOH . 
P 4 HOH D 34 534 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VAK . . . F 3 5.921 13.485 10.689 0.86 18.37 ? C1 VAK 402 A 1 
HETATM 2 C C2 VAK . . . F 3 5.862 14.08 9.433 0.86 17.71 ? C2 VAK 402 A 1 
HETATM 3 C C3 VAK . . . F 3 5.418 15.391 9.268 0.86 19.93 ? C3 VAK 402 A 1 
HETATM 4 C C4 VAK . . . F 3 5.011 16.169 10.35 0.86 23.58 ? C4 VAK 402 A 1 
HETATM 5 C C5 VAK . . . F 3 4.634 16.351 12.924 0.86 18.29 ? C5 VAK 402 A 1 
HETATM 6 C C6 VAK . . . F 3 4.305 16.385 15.528 0.86 19.16 ? C6 VAK 402 A 1 
HETATM 7 C C7 VAK . . . F 3 4.062 16.184 18.12 0.86 54.46 ? C7 VAK 402 A 1 
HETATM 8 C C8 VAK . . . F 3 5.183 15.792 19.083 0.86 48.32 ? C8 VAK 402 A 1 
HETATM 9 C C9 VAK . . . F 3 5.402 14.278 19.255 0.86 49.35 ? C9 VAK 402 A 1 
HETATM 10 C C10 VAK . . . F 3 5.044 13.435 18.011 0.86 32.67 ? C10 VAK 402 A 1 
HETATM 11 C C11 VAK . . . F 3 5.242 13.652 15.56 0.86 29.08 ? C11 VAK 402 A 1 
HETATM 12 C C12 VAK . . . F 3 5.603 13.538 13.152 0.86 21.01 ? C12 VAK 402 A 1 
HETATM 13 C C13 VAK . . . F 3 6.833 14.014 19.706 0.86 45.14 ? C13 VAK 402 A 1 
HETATM 14 C C14 VAK . . . F 3 5.878 12.164 17.86 0.86 44.38 ? C14 VAK 402 A 1 
HETATM 15 C C15 VAK . . . F 3 8.04 12.823 16.463 0.86 30.41 ? C15 VAK 402 A 1 
HETATM 16 C C16 VAK . . . F 3 5.054 15.58 11.713 0.86 12.28 ? C16 VAK 402 A 1 
HETATM 17 O O16 VAK . . . F 3 7.121 11.918 17.098 0.86 52.56 ? O16 VAK 402 A 1 
HETATM 18 C C17 VAK . . . F 3 4.7 15.7 14.263 0.86 21.22 ? C17 VAK 402 A 1 
HETATM 19 O O17 VAK . . . F 3 5.443 11.177 18.431 0.86 40.42 ? O17 VAK 402 A 1 
HETATM 20 C C18 VAK . . . F 3 5.186 14.302 14.351 0.86 24.92 ? C18 VAK 402 A 1 
HETATM 21 O O18 VAK . . . F 3 6.007 12.36 13.266 0.86 23.54 ? O18 VAK 402 A 1 
HETATM 22 C C19 VAK . . . F 3 4.929 14.237 16.767 0.86 33.16 ? C19 VAK 402 A 1 
HETATM 23 O O19 VAK . . . F 3 4.581 17.447 10.161 0.86 24.43 ? O19 VAK 402 A 1 
HETATM 24 C C20 VAK . . . F 3 4.415 15.623 16.801 0.86 26.39 ? C20 VAK 402 A 1 
HETATM 25 O O20 VAK . . . F 3 4.231 17.527 12.814 0.86 21.84 ? O20 VAK 402 A 1 
HETATM 26 C C21 VAK . . . F 3 5.535 14.183 11.824 0.86 15.3 ? C21 VAK 402 A 1 
HETATM 27 O O21 VAK . . . F 3 3.851 17.666 15.523 0.86 36.86 ? O21 VAK 402 A 1 
HETATM 28 C C22 VAK . . . F 3 7.788 14.879 18.928 0.86 37.54 ? C22 VAK 402 A 1 
HETATM 29 O O22 VAK . . . F 3 2.809 15.659 18.578 0.86 58.56 ? O22 VAK 402 A 1 
HETATM 30 O O23 VAK . . . F 3 4.559 13.846 20.331 0.86 47.3 ? O23 VAK 402 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#