data_7PGB
#
_model_server_result.job_id            Pq2rfSGn9wgGGRSHS_rs4A 
_model_server_result.datetime_utc      '2024-11-24 23:34:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pgb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AB","auth_seq_id":303}' 
#
_entry.id    7PGB 
#
_exptl.entry_id    7PGB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.229 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OCTANE 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PGB 
_cell.length_a            200.865 
_cell.length_b            200.865 
_cell.length_c            327.727 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PGB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    'P 4cw' 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentadecameric 15 author_defined_assembly 1 
? pentadecameric 15 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,M,N,O,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,QA,RA,SA,TA,UA,VA,WA,XA,FB,GB,HB,IB,JB,KB,LB,MB,NB,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,FD,GD,KD,LD 1 1 
D,E,F,J,K,L,P,Q,R,S,T,U,V,W,X,LA,MA,NA,OA,PA,YA,ZA,AB,BB,CB,DB,EB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,ED,HD,ID,JD 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 HA N N 
? 6 JA N N 
? 6 PA N N 
? 6 WA N N 
? 6 AB N N 
? 6 CB N N 
? 6 IB N N 
? 6 QB N N 
? 6 BC N N 
? 6 KC N N 
? 6 RC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 H CYS 22 1_555 A SG CYS 99 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 153 H CYS 150 1_555 A SG CYS 209 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 24 L CYS 23 1_555 B SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 135 L CYS 134 1_555 B SG CYS 195 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 D SG CYS 25 A CYS 22 1_555 D SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 D SG CYS 153 A CYS 150 1_555 D SG CYS 209 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 E SG CYS 24 B CYS 23 1_555 E SG CYS 89 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 E SG CYS 135 B CYS 134 1_555 E SG CYS 195 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 G SG CYS 25 R CYS 22 1_555 G SG CYS 99 R CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 G SG CYS 153 R CYS 150 1_555 G SG CYS 209 R CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 H SG CYS 24 S CYS 23 1_555 H SG CYS 89 S CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 H SG CYS 135 S CYS 134 1_555 H SG CYS 195 S CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf13 J SG CYS 25 U CYS 22 1_555 J SG CYS 99 U CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 J SG CYS 153 U CYS 150 1_555 J SG CYS 209 U CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 K SG CYS 24 V CYS 23 1_555 K SG CYS 89 V CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf16 K SG CYS 135 V CYS 134 1_555 K SG CYS 195 V CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf17 M SG CYS 25 X CYS 22 1_555 M SG CYS 99 X CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf18 M SG CYS 153 X CYS 150 1_555 M SG CYS 209 X CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf19 N SG CYS 24 Y CYS 23 1_555 N SG CYS 89 Y CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 N SG CYS 135 Y CYS 134 1_555 N SG CYS 195 Y CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf21 P SG CYS 25 a CYS 22 1_555 P SG CYS 99 a CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf22 P SG CYS 153 a CYS 150 1_555 P SG CYS 209 a CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf23 Q SG CYS 24 b CYS 23 1_555 Q SG CYS 89 b CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf24 Q SG CYS 135 b CYS 134 1_555 Q SG CYS 195 b CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf25 S SG CYS 25 m CYS 22 1_555 S SG CYS 99 m CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf26 S SG CYS 153 m CYS 150 1_555 S SG CYS 209 m CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf27 T SG CYS 24 n CYS 23 1_555 T SG CYS 89 n CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf28 T SG CYS 135 n CYS 134 1_555 T SG CYS 195 n CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf29 V SG CYS 25 p CYS 22 1_555 V SG CYS 99 p CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf30 V SG CYS 153 p CYS 150 1_555 V SG CYS 209 p CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf31 W SG CYS 24 q CYS 23 1_555 W SG CYS 89 q CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf32 W SG CYS 135 q CYS 134 1_555 W SG CYS 195 q CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf33 Y SG CYS 25 f CYS 22 1_555 Y SG CYS 99 f CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf34 Y SG CYS 153 f CYS 150 1_555 Y SG CYS 209 f CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf35 Z SG CYS 24 g CYS 23 1_555 Z SG CYS 89 g CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf36 Z SG CYS 135 g CYS 134 1_555 Z SG CYS 195 g CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf37 AA SG CYS 25 i CYS 22 1_555 AA SG CYS 99 i CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf38 AA SG CYS 153 i CYS 150 1_555 AA SG CYS 209 i CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf39 BA SG CYS 24 k CYS 23 1_555 BA SG CYS 89 k CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf40 BA SG CYS 135 k CYS 134 1_555 BA SG CYS 195 k CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C8 H18' 
_chem_comp.formula_weight    114.229 
_chem_comp.id                OCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCT sing 510 n n 
C1 H11 OCT sing 511 n n 
C1 H12 OCT sing 512 n n 
C1 H13 OCT sing 513 n n 
C2 C3 OCT sing 514 n n 
C2 H21 OCT sing 515 n n 
C2 H22 OCT sing 516 n n 
C3 C4 OCT sing 517 n n 
C3 H31 OCT sing 518 n n 
C3 H32 OCT sing 519 n n 
C4 C5 OCT sing 520 n n 
C4 H41 OCT sing 521 n n 
C4 H42 OCT sing 522 n n 
C5 C6 OCT sing 523 n n 
C5 H51 OCT sing 524 n n 
C5 H52 OCT sing 525 n n 
C6 C7 OCT sing 526 n n 
C6 H61 OCT sing 527 n n 
C6 H62 OCT sing 528 n n 
C7 C8 OCT sing 529 n n 
C7 H71 OCT sing 530 n n 
C7 H72 OCT sing 531 n n 
C8 H81 OCT sing 532 n n 
C8 H82 OCT sing 533 n n 
C8 H83 OCT sing 534 n n 
#
_atom_sites.entry_id                     7PGB 
_atom_sites.fract_transf_matrix[1][1]    0.004978 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
EA 4 4NB H 1 301 14 4NB 4NB . 
FA 4 4NB H 1 302 34 4NB 4NB . 
GA 5 LHG H 1 303 10 LHG LHG . 
HA 6 OCT H 1 304 6 OCT OCT . 
IA 7 PE4 H 1 305 5 PE4 PE4 . 
JA 6 OCT c 1 301 8 OCT OCT . 
KA 8 LNK c 1 302 5 LNK LNK . 
LA 5 LHG A 1 301 3 LHG LHG . 
MA 9 1PE A 1 302 3 1PE 1PE . 
NA 4 4NB C 1 301 2 4NB 4NB . 
OA 4 4NB C 1 302 10 4NB 4NB . 
PA 6 OCT C 1 303 10 OCT OCT . 
QA 4 4NB R 1 301 17 4NB 4NB . 
RA 5 LHG R 1 302 4 LHG LHG . 
SA 9 1PE R 1 303 1 1PE 1PE . 
TA 4 4NB T 1 301 16 4NB 4NB . 
UA 4 4NB T 1 302 18 4NB 4NB . 
VA 4 4NB T 1 303 31 4NB 4NB . 
WA 6 OCT T 1 304 13 OCT OCT . 
XA 8 LNK T 1 305 2 LNK LNK . 
YA 4 4NB U 1 301 30 4NB 4NB . 
ZA 5 LHG U 1 302 1 LHG LHG . 
AB 6 OCT U 1 303 7 OCT OCT . 
BB 4 4NB W 1 301 1 4NB 4NB . 
CB 6 OCT W 1 302 5 OCT OCT . 
DB 8 LNK W 1 303 3 LNK LNK . 
EB 8 LNK W 1 304 14 LNK LNK . 
FB 4 4NB X 1 301 13 4NB 4NB . 
GB 4 4NB X 1 302 25 4NB 4NB . 
HB 5 LHG X 1 303 9 LHG LHG . 
IB 6 OCT X 1 304 12 OCT OCT . 
JB 4 4NB Z 1 301 12 4NB 4NB . 
KB 4 4NB Z 1 302 15 4NB 4NB . 
LB 4 4NB Z 1 303 26 4NB 4NB . 
MB 8 LNK Z 1 304 8 LNK LNK . 
NB 8 LNK Z 1 305 13 LNK LNK . 
OB 10 D12 a 1 301 1 D12 D12 . 
PB 5 LHG a 1 302 2 LHG LHG . 
QB 6 OCT a 1 303 9 OCT OCT . 
RB 4 4NB d 1 301 3 4NB 4NB . 
SB 4 4NB d 1 302 33 4NB 4NB . 
TB 8 LNK d 1 303 7 LNK LNK . 
UB 8 LNK d 1 304 11 LNK LNK . 
VB 4 4NB m 1 301 6 4NB 4NB . 
WB 5 LHG m 1 302 6 LHG LHG . 
XB 4 4NB l 1 301 7 4NB 4NB . 
YB 4 4NB l 1 302 8 4NB 4NB . 
ZB 4 4NB l 1 303 28 4NB 4NB . 
AC 4 4NB l 1 304 29 4NB 4NB . 
BC 6 OCT l 1 305 11 OCT OCT . 
CC 9 1PE l 1 306 4 1PE 1PE . 
DC 8 LNK l 1 307 4 LNK LNK . 
EC 4 4NB p 1 301 5 4NB 4NB . 
FC 5 LHG p 1 302 5 LHG LHG . 
GC 11 R16 p 1 303 2 R16 R16 . 
HC 4 4NB o 1 301 4 4NB 4NB . 
IC 4 4NB o 1 302 9 4NB 4NB . 
JC 10 D12 o 1 303 3 D12 D12 . 
KC 6 OCT o 1 304 1 OCT OCT . 
LC 4 4NB f 1 301 21 4NB 4NB . 
MC 5 LHG f 1 302 7 LHG LHG . 
NC 4 4NB i 1 301 20 4NB 4NB . 
OC 5 LHG i 1 302 8 LHG LHG . 
PC 4 4NB h 1 301 19 4NB 4NB . 
QC 4 4NB h 1 302 27 4NB 4NB . 
RC 6 OCT h 1 303 4 OCT OCT . 
SC 12 BHC h 1 304 1 BHC BHC . 
TC 13 GOL h 1 305 1 GOL GOL . 
UC 9 1PE h 1 306 2 1PE 1PE . 
VC 8 LNK h 1 307 9 LNK LNK . 
WC 4 4NB e 1 301 22 4NB 4NB . 
XC 4 4NB e 1 302 23 4NB 4NB . 
YC 4 4NB e 1 303 24 4NB 4NB . 
ZC 10 D12 e 1 304 2 D12 D12 . 
AD 8 LNK e 1 305 1 LNK LNK . 
BD 8 LNK e 1 306 6 LNK LNK . 
CD 8 LNK e 1 307 10 LNK LNK . 
DD 14 HOH L 1 301 2 HOH HOH . 
ED 14 HOH B 1 301 3 HOH HOH . 
FD 14 HOH S 1 301 4 HOH HOH . 
GD 14 HOH Y 1 301 5 HOH HOH . 
HD 14 HOH b 1 301 6 HOH HOH . 
ID 14 HOH n 1 301 7 HOH HOH . 
JD 14 HOH q 1 301 8 HOH HOH . 
KD 14 HOH g 1 301 1 HOH HOH . 
LD 14 HOH k 1 301 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCT . . . AB 6 -122.623 47.163 -64.992 1 70.91 ? C1 OCT 303 U 1 
HETATM 2 C C2 OCT . . . AB 6 -121.688 47.712 -63.914 1 146.78 ? C2 OCT 303 U 1 
HETATM 3 C C3 OCT . . . AB 6 -120.966 48.95 -64.444 1 163.89 ? C3 OCT 303 U 1 
HETATM 4 C C4 OCT . . . AB 6 -119.699 49.23 -63.635 1 133.58 ? C4 OCT 303 U 1 
HETATM 5 C C5 OCT . . . AB 6 -118.723 49.999 -64.526 1 155.73 ? C5 OCT 303 U 1 
HETATM 6 C C6 OCT . . . AB 6 -117.84 50.942 -63.707 1 136.58 ? C6 OCT 303 U 1 
HETATM 7 C C7 OCT . . . AB 6 -117.059 51.858 -64.653 1 177.71 ? C7 OCT 303 U 1 
HETATM 8 C C8 OCT . . . AB 6 -116.148 52.804 -63.869 1 53.42 ? C8 OCT 303 U 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#