data_7PGG # _model_server_result.job_id C4F6hhe-Ix9KzgL6kwUDNA _model_server_result.datetime_utc '2024-10-26 20:26:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pgg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7PGG # _exptl.entry_id 7PGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 437.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}ethyl heptadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PGG _cell.length_a 157.471 _cell.length_b 157.471 _cell.length_c 106.394 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 4 A LEU 135 1_555 A N MSE 5 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 5 A MSE 136 1_555 A N GLN 6 A GLN 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LEU 19 A LEU 150 1_555 A N MSE 20 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 20 A MSE 151 1_555 A N MSE 21 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 21 A MSE 152 1_555 A N PHE 22 A PHE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C VAL 27 A VAL 158 1_555 A N MSE 28 A MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 28 A MSE 159 1_555 A N GLY 29 A GLY 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C ILE 54 A ILE 185 1_555 A N MSE 55 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 55 A MSE 186 1_555 A N THR 56 A THR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C SER 61 A SER 192 1_555 A N MSE 62 A MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C MSE 62 A MSE 193 1_555 A N GLY 63 A GLY 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 A C VAL 68 A VAL 199 1_555 A N MSE 69 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C MSE 69 A MSE 200 1_555 A N GLU 70 A GLU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale14 A C PHE 88 A PHE 219 1_555 A N MSE 89 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 A C MSE 89 A MSE 220 1_555 A N VAL 90 A VAL 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 A C GLU 127 A GLU 258 1_555 A N MSE 128 A MSE 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 A C MSE 128 A MSE 259 1_555 A N LEU 129 A LEU 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale18 A C LEU 131 A LEU 262 1_555 A N MSE 132 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 A C MSE 132 A MSE 263 1_555 A N ARG 133 A ARG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 A C ALA 134 A ALA 265 1_555 A N MSE 135 A MSE 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale21 A C MSE 135 A MSE 266 1_555 A N HIS 136 A HIS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale22 B C LEU 4 B LEU 135 1_555 B N MSE 5 B MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 B C MSE 5 B MSE 136 1_555 B N GLN 6 B GLN 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale24 B C LEU 19 B LEU 150 1_555 B N MSE 20 B MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale25 B C MSE 20 B MSE 151 1_555 B N MSE 21 B MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 B C MSE 21 B MSE 152 1_555 B N PHE 22 B PHE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale27 B C VAL 27 B VAL 158 1_555 B N MSE 28 B MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale28 B C MSE 28 B MSE 159 1_555 B N GLY 29 B GLY 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale29 B C ILE 54 B ILE 185 1_555 B N MSE 55 B MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale30 B C MSE 55 B MSE 186 1_555 B N THR 56 B THR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale31 B C SER 61 B SER 192 1_555 B N MSE 62 B MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale32 B C MSE 62 B MSE 193 1_555 B N GLY 63 B GLY 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale33 B C VAL 68 B VAL 199 1_555 B N MSE 69 B MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale34 B C MSE 69 B MSE 200 1_555 B N GLU 70 B GLU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale35 B C PHE 88 B PHE 219 1_555 B N MSE 89 B MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale36 B C MSE 89 B MSE 220 1_555 B N VAL 90 B VAL 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale37 B C GLU 127 B GLU 258 1_555 B N MSE 128 B MSE 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale38 B C MSE 128 B MSE 259 1_555 B N LEU 129 B LEU 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale39 B C LEU 131 B LEU 262 1_555 B N MSE 132 B MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale40 B C MSE 132 B MSE 263 1_555 B N ARG 133 B ARG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale41 B C ALA 134 B ALA 265 1_555 B N MSE 135 B MSE 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale42 B C MSE 135 B MSE 266 1_555 B N HIS 136 B HIS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C21 H44 N O6 P' _chem_comp.formula_weight 437.551 _chem_comp.id VVA _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}ethyl heptadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C37 C38 VVA sing 361 n n C37 C36 VVA sing 362 n n C38 C39 VVA sing 363 n n O31 C31 VVA doub 364 n n C35 C36 VVA sing 365 n n C35 C34 VVA sing 366 n n C33 C32 VVA sing 367 n n C33 C34 VVA sing 368 n n C31 C32 VVA sing 369 n n C31 O2 VVA sing 370 n n O2 C2 VVA sing 371 n n C2 C1 VVA sing 372 n n C1 O3P VVA sing 373 n n O3P P VVA sing 374 n n O1P P VVA doub 375 n n O2P P VVA sing 376 n n P O4P VVA sing 377 n n O4P C4 VVA sing 378 n n C4 C5 VVA sing 379 n n C5 N6 VVA sing 380 n n O2P H1 VVA sing 381 n n C4 H2 VVA sing 382 n n C4 H3 VVA sing 383 n n C5 H4 VVA sing 384 n n C5 H5 VVA sing 385 n n N6 H6 VVA sing 386 n n N6 H7 VVA sing 387 n n C1 H9 VVA sing 388 n n C1 H10 VVA sing 389 n n C2 H11 VVA sing 390 n n C2 H12 VVA sing 391 n n C32 H13 VVA sing 392 n n C32 H14 VVA sing 393 n n C33 H15 VVA sing 394 n n C33 H16 VVA sing 395 n n C34 H17 VVA sing 396 n n C34 H18 VVA sing 397 n n C35 H19 VVA sing 398 n n C35 H20 VVA sing 399 n n C36 H21 VVA sing 400 n n C36 H22 VVA sing 401 n n C37 H23 VVA sing 402 n n C37 H24 VVA sing 403 n n C38 H25 VVA sing 404 n n C38 H26 VVA sing 405 n n C39 H27 VVA sing 406 n n C39 H28 VVA sing 407 n n C39 C40 VVA sing 408 n n C40 C41 VVA sing 409 n n C41 C42 VVA sing 410 n n C42 C43 VVA sing 411 n n C43 C44 VVA sing 412 n n C44 C45 VVA sing 413 n n C45 C46 VVA sing 414 n n C46 C47 VVA sing 415 n n C40 H8 VVA sing 416 n n C40 H29 VVA sing 417 n n C41 H30 VVA sing 418 n n C41 H31 VVA sing 419 n n C42 H32 VVA sing 420 n n C42 H33 VVA sing 421 n n C43 H34 VVA sing 422 n n C43 H35 VVA sing 423 n n C44 H36 VVA sing 424 n n C44 H37 VVA sing 425 n n C45 H38 VVA sing 426 n n C45 H39 VVA sing 427 n n C46 H40 VVA sing 428 n n C46 H41 VVA sing 429 n n C47 H42 VVA sing 430 n n C47 H43 VVA sing 431 n n C47 H44 VVA sing 432 n n # _atom_sites.entry_id 7PGG _atom_sites.fract_transf_matrix[1][1] 0.00635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id VVA _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id VVA _pdbx_nonpoly_scheme.auth_mon_id VVA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1P VVA . . . C 2 135.718 155.665 -12.44 1 197.21 -1 O1P VVA 301 B 1 HETATM 2 P P VVA . . . C 2 135.69 156.971 -11.684 1 202.4 ? P VVA 301 B 1 HETATM 3 O O2P VVA . . . C 2 134.513 157.795 -12.148 1 210.48 ? O2P VVA 301 B 1 HETATM 4 O O4P VVA . . . C 2 137.086 157.8 -11.971 1 190.75 ? O4P VVA 301 B 1 HETATM 5 C C4 VVA . . . C 2 137.44 158.055 -13.3 1 157.48 ? C4 VVA 301 B 1 HETATM 6 C C5 VVA . . . C 2 138.828 158.69 -13.353 1 141.38 ? C5 VVA 301 B 1 HETATM 7 N N6 VVA . . . C 2 138.916 159.746 -12.361 1 142.82 ? N6 VVA 301 B 1 HETATM 8 O O3P VVA . . . C 2 135.543 156.669 -10.07 1 165.32 ? O3P VVA 301 B 1 HETATM 9 C C1 VVA . . . C 2 134.258 156.506 -9.541 1 150.75 ? C1 VVA 301 B 1 HETATM 10 C C2 VVA . . . C 2 134.353 156.027 -8.094 1 143.67 ? C2 VVA 301 B 1 HETATM 11 O O2 VVA . . . C 2 134.084 154.654 -8.027 1 150.75 ? O2 VVA 301 B 1 HETATM 12 C C31 VVA . . . C 2 132.98 154.337 -7.228 1 129.5 ? C31 VVA 301 B 1 HETATM 13 O O31 VVA . . . C 2 132.066 155.088 -7.157 1 165.89 ? O31 VVA 301 B 1 HETATM 14 C C32 VVA . . . C 2 132.949 153.034 -6.433 1 122.98 ? C32 VVA 301 B 1 HETATM 15 C C33 VVA . . . C 2 131.667 152.272 -6.762 1 117.09 ? C33 VVA 301 B 1 HETATM 16 C C34 VVA . . . C 2 130.861 152.026 -5.486 1 125.24 ? C34 VVA 301 B 1 HETATM 17 C C35 VVA . . . C 2 131.342 150.746 -4.809 1 123.48 ? C35 VVA 301 B 1 HETATM 18 C C36 VVA . . . C 2 130.415 149.593 -5.187 1 120.28 ? C36 VVA 301 B 1 HETATM 19 C C37 VVA . . . C 2 130.705 148.385 -4.3 1 141.31 ? C37 VVA 301 B 1 HETATM 20 C C38 VVA . . . C 2 130.838 147.131 -5.163 1 156.32 ? C38 VVA 301 B 1 HETATM 21 C C39 VVA . . . C 2 131.329 145.966 -4.306 1 149.77 ? C39 VVA 301 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #