data_7PGI # _model_server_result.job_id V1fyGYSlDBkSz915piafUw _model_server_result.datetime_utc '2024-10-26 20:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 7PGI # _exptl.entry_id 7PGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PGI _cell.length_a 178.18 _cell.length_b 191.8 _cell.length_c 192.32 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M 1 1 E,F,G,H,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 23 A TYR 154 1_555 K NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc2 I O ACT . A ACT 501 1_555 J NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc3 J NA NA . A NA 502 1_555 L O ACT . C ACT 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc4 J NA NA . A NA 502 1_555 L OXT ACT . C ACT 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.19 ? metalc ? metalc5 J NA NA . A NA 502 1_555 M OXT ACT . D ACT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc6 K NA NA . A NA 503 1_555 B OH TYR 23 B TYR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc7 K NA NA . A NA 503 1_555 C OH TYR 23 C TYR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc8 K NA NA . A NA 503 1_555 D OH TYR 23 D TYR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc9 K NA NA . A NA 503 1_555 M O ACT . D ACT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc10 E OH TYR 23 E TYR 154 1_555 Q NA NA . G NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc11 O OXT ACT . E ACT 302 1_555 P NA NA . F NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc12 F OH TYR 23 F TYR 154 1_555 Q NA NA . G NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc13 G OH TYR 23 G TYR 154 1_555 Q NA NA . G NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc14 Q NA NA . G NA 301 1_555 H OH TYR 23 H TYR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 7PGI _atom_sites.fract_transf_matrix[1][1] 0.005612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 ACT A 1 501 501 ACT ACT . J 3 NA A 1 502 1 NA NA . K 3 NA A 1 503 2 NA NA . L 2 ACT C 1 301 301 ACT ACT . M 2 ACT D 1 401 401 ACT ACT . N 4 MG E 1 301 130 MG MG . O 2 ACT E 1 302 301 ACT ACT . P 3 NA F 1 301 3 NA NA . Q 3 NA G 1 301 4 NA NA . R 2 ACT G 1 302 501 ACT ACT . S 2 ACT H 1 401 401 ACT ACT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . I 2 -44.281 -40.347 -10.656 1 109.87 ? C ACT 501 A 1 HETATM 2 O O ACT . . . I 2 -43.569 -41.07 -11.408 1 119.58 ? O ACT 501 A 1 HETATM 3 O OXT ACT . . . I 2 -45.003 -39.357 -10.963 1 95.42 ? OXT ACT 501 A 1 HETATM 4 C CH3 ACT . . . I 2 -44.277 -40.713 -9.133 1 85.44 ? CH3 ACT 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 74 _model_server_stats.create_model_time_ms 103 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #