data_7PGY # _model_server_result.job_id JRJoLc5rAPz3tI7hfmI-Mg _model_server_result.datetime_utc '2024-11-01 06:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 7PGY # _exptl.entry_id 7PGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PGY _cell.length_a 35.61 _cell.length_b 56.01 _cell.length_c 66.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 115 AAA ASP 515 1_555 B CA CA . AAA CA 601 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.792 ? metalc ? metalc2 A O ASP 115 AAA ASP 515 1_555 C CA CA . AAA CA 602 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.945 ? metalc ? metalc3 A OD1 ASP 115 AAA ASP 515 1_555 C CA CA . AAA CA 602 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.996 ? metalc ? metalc4 B CA CA . AAA CA 601 1_555 Q O HOH . AAA HOH 716 4_445 ? A ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 B CA CA . AAA CA 601 1_555 Q O HOH . AAA HOH 884 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.77 ? metalc ? metalc6 C CA CA . AAA CA 602 1_555 Q O HOH . AAA HOH 740 4_545 ? B ? ? ? ? ? ? ? ? ? ? 3.018 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 198 n n C1 C2 GOL sing 199 n n C1 H11 GOL sing 200 n n C1 H12 GOL sing 201 n n O1 HO1 GOL sing 202 n n C2 O2 GOL sing 203 n n C2 C3 GOL sing 204 n n C2 H2 GOL sing 205 n n O2 HO2 GOL sing 206 n n C3 O3 GOL sing 207 n n C3 H31 GOL sing 208 n n C3 H32 GOL sing 209 n n O3 HO3 GOL sing 210 n n # _atom_sites.entry_id 7PGY _atom_sites.fract_transf_matrix[1][1] 0.028082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA AAA 1 601 1 CA CA . C 2 CA AAA 1 602 2 CA CA . D 3 CL AAA 1 603 11 CL CL . E 3 CL AAA 1 604 12 CL CL . F 4 GOL AAA 1 605 1 GOL GOL . G 4 GOL AAA 1 606 3 GOL GOL . H 4 GOL AAA 1 607 6 GOL GOL . I 4 GOL AAA 1 608 7 GOL GOL . J 4 GOL AAA 1 609 8 GOL GOL . K 4 GOL AAA 1 610 9 GOL GOL . L 4 GOL AAA 1 611 15 GOL GOL . M 5 ACT AAA 1 612 21 ACT ACT . N 5 ACT AAA 1 613 22 ACT ACT . O 6 EDO AAA 1 614 41 EDO EDO . P 7 FMN AAA 1 615 1 FMN FMN . Q 8 HOH AAA 1 701 93 HOH HOH . Q 8 HOH AAA 2 702 67 HOH HOH . Q 8 HOH AAA 3 703 83 HOH HOH . Q 8 HOH AAA 4 704 159 HOH HOH . Q 8 HOH AAA 5 705 14 HOH HOH . Q 8 HOH AAA 6 706 326 HOH HOH . Q 8 HOH AAA 7 707 37 HOH HOH . Q 8 HOH AAA 8 708 138 HOH HOH . Q 8 HOH AAA 9 709 151 HOH HOH . Q 8 HOH AAA 10 710 62 HOH HOH . Q 8 HOH AAA 11 711 258 HOH HOH . Q 8 HOH AAA 12 712 150 HOH HOH . Q 8 HOH AAA 13 713 285 HOH HOH . Q 8 HOH AAA 14 714 6 HOH HOH . Q 8 HOH AAA 15 715 286 HOH HOH . Q 8 HOH AAA 16 716 178 HOH HOH . Q 8 HOH AAA 17 717 328 HOH HOH . Q 8 HOH AAA 18 718 4 HOH HOH . Q 8 HOH AAA 19 719 135 HOH HOH . Q 8 HOH AAA 20 720 22 HOH HOH . Q 8 HOH AAA 21 721 95 HOH HOH . Q 8 HOH AAA 22 722 51 HOH HOH . Q 8 HOH AAA 23 723 332 HOH HOH . Q 8 HOH AAA 24 724 75 HOH HOH . Q 8 HOH AAA 25 725 248 HOH HOH . Q 8 HOH AAA 26 726 11 HOH HOH . Q 8 HOH AAA 27 727 60 HOH HOH . Q 8 HOH AAA 28 728 81 HOH HOH . Q 8 HOH AAA 29 729 272 HOH HOH . Q 8 HOH AAA 30 730 40 HOH HOH . Q 8 HOH AAA 31 731 27 HOH HOH . Q 8 HOH AAA 32 732 316 HOH HOH . Q 8 HOH AAA 33 733 32 HOH HOH . Q 8 HOH AAA 34 734 233 HOH HOH . Q 8 HOH AAA 35 735 73 HOH HOH . Q 8 HOH AAA 36 736 61 HOH HOH . Q 8 HOH AAA 37 737 89 HOH HOH . Q 8 HOH AAA 38 738 146 HOH HOH . Q 8 HOH AAA 39 739 10 HOH HOH . Q 8 HOH AAA 40 740 85 HOH HOH . Q 8 HOH AAA 41 741 52 HOH HOH . Q 8 HOH AAA 42 742 28 HOH HOH . Q 8 HOH AAA 43 743 72 HOH HOH . Q 8 HOH AAA 44 744 109 HOH HOH . Q 8 HOH AAA 45 745 92 HOH HOH . Q 8 HOH AAA 46 746 24 HOH HOH . Q 8 HOH AAA 47 747 282 HOH HOH . Q 8 HOH AAA 48 748 15 HOH HOH . Q 8 HOH AAA 49 749 45 HOH HOH . Q 8 HOH AAA 50 750 77 HOH HOH . Q 8 HOH AAA 51 751 112 HOH HOH . Q 8 HOH AAA 52 752 1 HOH HOH . Q 8 HOH AAA 53 753 330 HOH HOH . Q 8 HOH AAA 54 754 209 HOH HOH . Q 8 HOH AAA 55 755 35 HOH HOH . Q 8 HOH AAA 56 756 31 HOH HOH . Q 8 HOH AAA 57 757 16 HOH HOH . Q 8 HOH AAA 58 758 94 HOH HOH . Q 8 HOH AAA 59 759 74 HOH HOH . Q 8 HOH AAA 60 760 147 HOH HOH . Q 8 HOH AAA 61 761 64 HOH HOH . Q 8 HOH AAA 62 762 5 HOH HOH . Q 8 HOH AAA 63 763 36 HOH HOH . Q 8 HOH AAA 64 764 324 HOH HOH . Q 8 HOH AAA 65 765 267 HOH HOH . Q 8 HOH AAA 66 766 308 HOH HOH . Q 8 HOH AAA 67 767 56 HOH HOH . Q 8 HOH AAA 68 768 54 HOH HOH . Q 8 HOH AAA 69 769 322 HOH HOH . Q 8 HOH AAA 70 770 39 HOH HOH . Q 8 HOH AAA 71 771 134 HOH HOH . Q 8 HOH AAA 72 772 2 HOH HOH . Q 8 HOH AAA 73 773 107 HOH HOH . Q 8 HOH AAA 74 774 34 HOH HOH . Q 8 HOH AAA 75 775 101 HOH HOH . Q 8 HOH AAA 76 776 277 HOH HOH . Q 8 HOH AAA 77 777 309 HOH HOH . Q 8 HOH AAA 78 778 167 HOH HOH . Q 8 HOH AAA 79 779 30 HOH HOH . Q 8 HOH AAA 80 780 68 HOH HOH . Q 8 HOH AAA 81 781 108 HOH HOH . Q 8 HOH AAA 82 782 136 HOH HOH . Q 8 HOH AAA 83 783 70 HOH HOH . Q 8 HOH AAA 84 784 279 HOH HOH . Q 8 HOH AAA 85 785 98 HOH HOH . Q 8 HOH AAA 86 786 43 HOH HOH . Q 8 HOH AAA 87 787 131 HOH HOH . Q 8 HOH AAA 88 788 19 HOH HOH . Q 8 HOH AAA 89 789 3 HOH HOH . Q 8 HOH AAA 90 790 42 HOH HOH . Q 8 HOH AAA 91 791 18 HOH HOH . Q 8 HOH AAA 92 792 154 HOH HOH . Q 8 HOH AAA 93 793 29 HOH HOH . Q 8 HOH AAA 94 794 274 HOH HOH . Q 8 HOH AAA 95 795 99 HOH HOH . Q 8 HOH AAA 96 796 331 HOH HOH . Q 8 HOH AAA 97 797 76 HOH HOH . Q 8 HOH AAA 98 798 293 HOH HOH . Q 8 HOH AAA 99 799 47 HOH HOH . Q 8 HOH AAA 100 800 139 HOH HOH . Q 8 HOH AAA 101 801 44 HOH HOH . Q 8 HOH AAA 102 802 127 HOH HOH . Q 8 HOH AAA 103 803 38 HOH HOH . Q 8 HOH AAA 104 804 155 HOH HOH . Q 8 HOH AAA 105 805 288 HOH HOH . Q 8 HOH AAA 106 806 17 HOH HOH . Q 8 HOH AAA 107 807 174 HOH HOH . Q 8 HOH AAA 108 808 86 HOH HOH . Q 8 HOH AAA 109 809 283 HOH HOH . Q 8 HOH AAA 110 810 23 HOH HOH . Q 8 HOH AAA 111 811 8 HOH HOH . Q 8 HOH AAA 112 812 88 HOH HOH . Q 8 HOH AAA 113 813 7 HOH HOH . Q 8 HOH AAA 114 814 302 HOH HOH . Q 8 HOH AAA 115 815 106 HOH HOH . Q 8 HOH AAA 116 816 175 HOH HOH . Q 8 HOH AAA 117 817 100 HOH HOH . Q 8 HOH AAA 118 818 46 HOH HOH . Q 8 HOH AAA 119 819 294 HOH HOH . Q 8 HOH AAA 120 820 299 HOH HOH . Q 8 HOH AAA 121 821 55 HOH HOH . Q 8 HOH AAA 122 822 26 HOH HOH . Q 8 HOH AAA 123 823 13 HOH HOH . Q 8 HOH AAA 124 824 166 HOH HOH . Q 8 HOH AAA 125 825 65 HOH HOH . Q 8 HOH AAA 126 826 33 HOH HOH . Q 8 HOH AAA 127 827 71 HOH HOH . Q 8 HOH AAA 128 828 91 HOH HOH . Q 8 HOH AAA 129 829 289 HOH HOH . Q 8 HOH AAA 130 830 102 HOH HOH . Q 8 HOH AAA 131 831 25 HOH HOH . Q 8 HOH AAA 132 832 290 HOH HOH . Q 8 HOH AAA 133 833 145 HOH HOH . Q 8 HOH AAA 134 834 20 HOH HOH . Q 8 HOH AAA 135 835 58 HOH HOH . Q 8 HOH AAA 136 836 113 HOH HOH . Q 8 HOH AAA 137 837 327 HOH HOH . Q 8 HOH AAA 138 838 69 HOH HOH . Q 8 HOH AAA 139 839 117 HOH HOH . Q 8 HOH AAA 140 840 59 HOH HOH . Q 8 HOH AAA 141 841 329 HOH HOH . Q 8 HOH AAA 142 842 261 HOH HOH . Q 8 HOH AAA 143 843 222 HOH HOH . Q 8 HOH AAA 144 844 57 HOH HOH . Q 8 HOH AAA 145 845 114 HOH HOH . Q 8 HOH AAA 146 846 158 HOH HOH . Q 8 HOH AAA 147 847 104 HOH HOH . Q 8 HOH AAA 148 848 225 HOH HOH . Q 8 HOH AAA 149 849 300 HOH HOH . Q 8 HOH AAA 150 850 125 HOH HOH . Q 8 HOH AAA 151 851 244 HOH HOH . Q 8 HOH AAA 152 852 243 HOH HOH . Q 8 HOH AAA 153 853 53 HOH HOH . Q 8 HOH AAA 154 854 249 HOH HOH . Q 8 HOH AAA 155 855 334 HOH HOH . Q 8 HOH AAA 156 856 315 HOH HOH . Q 8 HOH AAA 157 857 142 HOH HOH . Q 8 HOH AAA 158 858 161 HOH HOH . Q 8 HOH AAA 159 859 307 HOH HOH . Q 8 HOH AAA 160 860 287 HOH HOH . Q 8 HOH AAA 161 861 245 HOH HOH . Q 8 HOH AAA 162 862 80 HOH HOH . Q 8 HOH AAA 163 863 126 HOH HOH . Q 8 HOH AAA 164 864 254 HOH HOH . Q 8 HOH AAA 165 865 141 HOH HOH . Q 8 HOH AAA 166 866 118 HOH HOH . Q 8 HOH AAA 167 867 221 HOH HOH . Q 8 HOH AAA 168 868 310 HOH HOH . Q 8 HOH AAA 169 869 252 HOH HOH . Q 8 HOH AAA 170 870 133 HOH HOH . Q 8 HOH AAA 171 871 48 HOH HOH . Q 8 HOH AAA 172 872 50 HOH HOH . Q 8 HOH AAA 173 873 156 HOH HOH . Q 8 HOH AAA 174 874 144 HOH HOH . Q 8 HOH AAA 175 875 124 HOH HOH . Q 8 HOH AAA 176 876 257 HOH HOH . Q 8 HOH AAA 177 877 264 HOH HOH . Q 8 HOH AAA 178 878 84 HOH HOH . Q 8 HOH AAA 179 879 321 HOH HOH . Q 8 HOH AAA 180 880 320 HOH HOH . Q 8 HOH AAA 181 881 12 HOH HOH . Q 8 HOH AAA 182 882 278 HOH HOH . Q 8 HOH AAA 183 883 303 HOH HOH . Q 8 HOH AAA 184 884 265 HOH HOH . Q 8 HOH AAA 185 885 333 HOH HOH . Q 8 HOH AAA 186 886 253 HOH HOH . Q 8 HOH AAA 187 887 298 HOH HOH . Q 8 HOH AAA 188 888 183 HOH HOH . Q 8 HOH AAA 189 889 317 HOH HOH . Q 8 HOH AAA 190 890 200 HOH HOH . Q 8 HOH AAA 191 891 172 HOH HOH . Q 8 HOH AAA 192 892 194 HOH HOH . Q 8 HOH AAA 193 893 323 HOH HOH . Q 8 HOH AAA 194 894 203 HOH HOH . Q 8 HOH AAA 195 895 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . I 4 -28.445 15.134 -1.277 0.5 23.24 0 C1 GOL 608 AAA 1 HETATM 2 C C1 GOL . B . I 4 -28.156 14.177 -0.293 0.2 20.89 0 C1 GOL 608 AAA 1 HETATM 3 O O1 GOL . A . I 4 -27.975 16.475 -1.444 0.5 23.91 0 O1 GOL 608 AAA 1 HETATM 4 O O1 GOL . B . I 4 -27.411 13.015 0.045 0.2 21.67 0 O1 GOL 608 AAA 1 HETATM 5 C C2 GOL . A . I 4 -28.474 14.406 -2.608 0.5 17.7 0 C2 GOL 608 AAA 1 HETATM 6 C C2 GOL . B . I 4 -28.413 14.238 -1.779 0.2 19.26 0 C2 GOL 608 AAA 1 HETATM 7 O O2 GOL . A . I 4 -28.516 12.989 -2.466 0.5 18.23 0 O2 GOL 608 AAA 1 HETATM 8 O O2 GOL . B . I 4 -28.645 12.909 -2.251 0.2 20.13 0 O2 GOL 608 AAA 1 HETATM 9 C C3 GOL . A . I 4 -29.62 14.883 -3.464 0.5 17.98 0 C3 GOL 608 AAA 1 HETATM 10 C C3 GOL . B . I 4 -29.546 15.181 -2.134 0.2 18.93 0 C3 GOL 608 AAA 1 HETATM 11 O O3 GOL . A . I 4 -30.849 14.68 -2.778 0.5 21.05 0 O3 GOL 608 AAA 1 HETATM 12 O O3 GOL . B . I 4 -30.791 14.496 -2.168 0.2 18.58 0 O3 GOL 608 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 12 #