data_7PGZ # _model_server_result.job_id 1YaVQKj56Z9xEkspj9h7Bw _model_server_result.datetime_utc '2024-11-28 20:05:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7PGZ # _exptl.entry_id 7PGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PGZ _cell.length_a 35.61 _cell.length_b 54.55 _cell.length_c 66.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 75 AAA GLU 475 1_555 B MG MG . AAA MG 601 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.866 ? metalc ? metalc2 A O ASP 101 AAA ASP 501 1_555 B MG MG . AAA MG 601 4_555 ? ? ? ? A ? ? ? ? ? ? ? 2.798 ? metalc ? metalc3 B MG MG . AAA MG 601 1_555 T O HOH . AAA HOH 810 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc4 C MG MG . AAA MG 602 1_555 T O HOH . AAA HOH 773 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc5 C MG MG . AAA MG 602 1_555 T O HOH . AAA HOH 782 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.744 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 192 n n C1 C2 GOL sing 193 n n C1 H11 GOL sing 194 n n C1 H12 GOL sing 195 n n O1 HO1 GOL sing 196 n n C2 O2 GOL sing 197 n n C2 C3 GOL sing 198 n n C2 H2 GOL sing 199 n n O2 HO2 GOL sing 200 n n C3 O3 GOL sing 201 n n C3 H31 GOL sing 202 n n C3 H32 GOL sing 203 n n O3 HO3 GOL sing 204 n n # _atom_sites.entry_id 7PGZ _atom_sites.fract_transf_matrix[1][1] 0.028082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG AAA 1 601 1 MG MG . C 2 MG AAA 1 602 2 MG MG . D 3 GOL AAA 1 603 1 GOL GOL . E 3 GOL AAA 1 604 2 GOL GOL . F 3 GOL AAA 1 605 4 GOL GOL . G 3 GOL AAA 1 606 6 GOL GOL . H 3 GOL AAA 1 607 8 GOL GOL . I 3 GOL AAA 1 608 10 GOL GOL . J 3 GOL AAA 1 609 12 GOL GOL . K 3 GOL AAA 1 610 13 GOL GOL . L 3 GOL AAA 1 611 14 GOL GOL . M 3 GOL AAA 1 612 15 GOL GOL . N 3 GOL AAA 1 613 17 GOL GOL . O 3 GOL AAA 1 614 18 GOL GOL . P 3 GOL AAA 1 615 19 GOL GOL . Q 4 EDO AAA 1 616 21 EDO EDO . R 4 EDO AAA 1 617 22 EDO EDO . S 5 FMN AAA 1 618 1 FMN FMN . T 6 HOH AAA 1 701 334 HOH HOH . T 6 HOH AAA 2 702 348 HOH HOH . T 6 HOH AAA 3 703 303 HOH HOH . T 6 HOH AAA 4 704 243 HOH HOH . T 6 HOH AAA 5 705 294 HOH HOH . T 6 HOH AAA 6 706 296 HOH HOH . T 6 HOH AAA 7 707 241 HOH HOH . T 6 HOH AAA 8 708 232 HOH HOH . T 6 HOH AAA 9 709 102 HOH HOH . T 6 HOH AAA 10 710 12 HOH HOH . T 6 HOH AAA 11 711 104 HOH HOH . T 6 HOH AAA 12 712 248 HOH HOH . T 6 HOH AAA 13 713 290 HOH HOH . T 6 HOH AAA 14 714 87 HOH HOH . T 6 HOH AAA 15 715 144 HOH HOH . T 6 HOH AAA 16 716 272 HOH HOH . T 6 HOH AAA 17 717 211 HOH HOH . T 6 HOH AAA 18 718 108 HOH HOH . T 6 HOH AAA 19 719 16 HOH HOH . T 6 HOH AAA 20 720 129 HOH HOH . T 6 HOH AAA 21 721 13 HOH HOH . T 6 HOH AAA 22 722 35 HOH HOH . T 6 HOH AAA 23 723 74 HOH HOH . T 6 HOH AAA 24 724 89 HOH HOH . T 6 HOH AAA 25 725 114 HOH HOH . T 6 HOH AAA 26 726 19 HOH HOH . T 6 HOH AAA 27 727 291 HOH HOH . T 6 HOH AAA 28 728 39 HOH HOH . T 6 HOH AAA 29 729 308 HOH HOH . T 6 HOH AAA 30 730 9 HOH HOH . T 6 HOH AAA 31 731 336 HOH HOH . T 6 HOH AAA 32 732 75 HOH HOH . T 6 HOH AAA 33 733 113 HOH HOH . T 6 HOH AAA 34 734 237 HOH HOH . T 6 HOH AAA 35 735 34 HOH HOH . T 6 HOH AAA 36 736 149 HOH HOH . T 6 HOH AAA 37 737 3 HOH HOH . T 6 HOH AAA 38 738 132 HOH HOH . T 6 HOH AAA 39 739 161 HOH HOH . T 6 HOH AAA 40 740 361 HOH HOH . T 6 HOH AAA 41 741 25 HOH HOH . T 6 HOH AAA 42 742 2 HOH HOH . T 6 HOH AAA 43 743 134 HOH HOH . T 6 HOH AAA 44 744 252 HOH HOH . T 6 HOH AAA 45 745 48 HOH HOH . T 6 HOH AAA 46 746 68 HOH HOH . T 6 HOH AAA 47 747 174 HOH HOH . T 6 HOH AAA 48 748 151 HOH HOH . T 6 HOH AAA 49 749 42 HOH HOH . T 6 HOH AAA 50 750 117 HOH HOH . T 6 HOH AAA 51 751 142 HOH HOH . T 6 HOH AAA 52 752 266 HOH HOH . T 6 HOH AAA 53 753 33 HOH HOH . T 6 HOH AAA 54 754 24 HOH HOH . T 6 HOH AAA 55 755 133 HOH HOH . T 6 HOH AAA 56 756 124 HOH HOH . T 6 HOH AAA 57 757 84 HOH HOH . T 6 HOH AAA 58 758 279 HOH HOH . T 6 HOH AAA 59 759 15 HOH HOH . T 6 HOH AAA 60 760 238 HOH HOH . T 6 HOH AAA 61 761 118 HOH HOH . T 6 HOH AAA 62 762 100 HOH HOH . T 6 HOH AAA 63 763 45 HOH HOH . T 6 HOH AAA 64 764 50 HOH HOH . T 6 HOH AAA 65 765 123 HOH HOH . T 6 HOH AAA 66 766 107 HOH HOH . T 6 HOH AAA 67 767 120 HOH HOH . T 6 HOH AAA 68 768 76 HOH HOH . T 6 HOH AAA 69 769 41 HOH HOH . T 6 HOH AAA 70 770 6 HOH HOH . T 6 HOH AAA 71 771 226 HOH HOH . T 6 HOH AAA 72 772 23 HOH HOH . T 6 HOH AAA 73 773 22 HOH HOH . T 6 HOH AAA 74 774 349 HOH HOH . T 6 HOH AAA 75 775 206 HOH HOH . T 6 HOH AAA 76 776 106 HOH HOH . T 6 HOH AAA 77 777 146 HOH HOH . T 6 HOH AAA 78 778 341 HOH HOH . T 6 HOH AAA 79 779 81 HOH HOH . T 6 HOH AAA 80 780 11 HOH HOH . T 6 HOH AAA 81 781 175 HOH HOH . T 6 HOH AAA 82 782 135 HOH HOH . T 6 HOH AAA 83 783 293 HOH HOH . T 6 HOH AAA 84 784 92 HOH HOH . T 6 HOH AAA 85 785 85 HOH HOH . T 6 HOH AAA 86 786 69 HOH HOH . T 6 HOH AAA 87 787 82 HOH HOH . T 6 HOH AAA 88 788 177 HOH HOH . T 6 HOH AAA 89 789 322 HOH HOH . T 6 HOH AAA 90 790 109 HOH HOH . T 6 HOH AAA 91 791 119 HOH HOH . T 6 HOH AAA 92 792 209 HOH HOH . T 6 HOH AAA 93 793 105 HOH HOH . T 6 HOH AAA 94 794 99 HOH HOH . T 6 HOH AAA 95 795 4 HOH HOH . T 6 HOH AAA 96 796 21 HOH HOH . T 6 HOH AAA 97 797 61 HOH HOH . T 6 HOH AAA 98 798 355 HOH HOH . T 6 HOH AAA 99 799 350 HOH HOH . T 6 HOH AAA 100 800 5 HOH HOH . T 6 HOH AAA 101 801 40 HOH HOH . T 6 HOH AAA 102 802 125 HOH HOH . T 6 HOH AAA 103 803 36 HOH HOH . T 6 HOH AAA 104 804 31 HOH HOH . T 6 HOH AAA 105 805 52 HOH HOH . T 6 HOH AAA 106 806 111 HOH HOH . T 6 HOH AAA 107 807 59 HOH HOH . T 6 HOH AAA 108 808 8 HOH HOH . T 6 HOH AAA 109 809 30 HOH HOH . T 6 HOH AAA 110 810 57 HOH HOH . T 6 HOH AAA 111 811 178 HOH HOH . T 6 HOH AAA 112 812 321 HOH HOH . T 6 HOH AAA 113 813 29 HOH HOH . T 6 HOH AAA 114 814 17 HOH HOH . T 6 HOH AAA 115 815 44 HOH HOH . T 6 HOH AAA 116 816 326 HOH HOH . T 6 HOH AAA 117 817 295 HOH HOH . T 6 HOH AAA 118 818 58 HOH HOH . T 6 HOH AAA 119 819 286 HOH HOH . T 6 HOH AAA 120 820 136 HOH HOH . T 6 HOH AAA 121 821 305 HOH HOH . T 6 HOH AAA 122 822 1 HOH HOH . T 6 HOH AAA 123 823 126 HOH HOH . T 6 HOH AAA 124 824 197 HOH HOH . T 6 HOH AAA 125 825 72 HOH HOH . T 6 HOH AAA 126 826 165 HOH HOH . T 6 HOH AAA 127 827 71 HOH HOH . T 6 HOH AAA 128 828 331 HOH HOH . T 6 HOH AAA 129 829 298 HOH HOH . T 6 HOH AAA 130 830 256 HOH HOH . T 6 HOH AAA 131 831 181 HOH HOH . T 6 HOH AAA 132 832 332 HOH HOH . T 6 HOH AAA 133 833 352 HOH HOH . T 6 HOH AAA 134 834 121 HOH HOH . T 6 HOH AAA 135 835 337 HOH HOH . T 6 HOH AAA 136 836 325 HOH HOH . T 6 HOH AAA 137 837 28 HOH HOH . T 6 HOH AAA 138 838 366 HOH HOH . T 6 HOH AAA 139 839 357 HOH HOH . T 6 HOH AAA 140 840 302 HOH HOH . T 6 HOH AAA 141 841 91 HOH HOH . T 6 HOH AAA 142 842 122 HOH HOH . T 6 HOH AAA 143 843 225 HOH HOH . T 6 HOH AAA 144 844 329 HOH HOH . T 6 HOH AAA 145 845 170 HOH HOH . T 6 HOH AAA 146 846 7 HOH HOH . T 6 HOH AAA 147 847 130 HOH HOH . T 6 HOH AAA 148 848 179 HOH HOH . T 6 HOH AAA 149 849 222 HOH HOH . T 6 HOH AAA 150 850 345 HOH HOH . T 6 HOH AAA 151 851 141 HOH HOH . T 6 HOH AAA 152 852 263 HOH HOH . T 6 HOH AAA 153 853 274 HOH HOH . T 6 HOH AAA 154 854 163 HOH HOH . T 6 HOH AAA 155 855 46 HOH HOH . T 6 HOH AAA 156 856 330 HOH HOH . T 6 HOH AAA 157 857 198 HOH HOH . T 6 HOH AAA 158 858 55 HOH HOH . T 6 HOH AAA 159 859 319 HOH HOH . T 6 HOH AAA 160 860 278 HOH HOH . T 6 HOH AAA 161 861 310 HOH HOH . T 6 HOH AAA 162 862 73 HOH HOH . T 6 HOH AAA 163 863 38 HOH HOH . T 6 HOH AAA 164 864 373 HOH HOH . T 6 HOH AAA 165 865 347 HOH HOH . T 6 HOH AAA 166 866 53 HOH HOH . T 6 HOH AAA 167 867 358 HOH HOH . T 6 HOH AAA 168 868 367 HOH HOH . T 6 HOH AAA 169 869 153 HOH HOH . T 6 HOH AAA 170 870 297 HOH HOH . T 6 HOH AAA 171 871 317 HOH HOH . T 6 HOH AAA 172 872 356 HOH HOH . T 6 HOH AAA 173 873 51 HOH HOH . T 6 HOH AAA 174 874 253 HOH HOH . T 6 HOH AAA 175 875 110 HOH HOH . T 6 HOH AAA 176 876 192 HOH HOH . T 6 HOH AAA 177 877 364 HOH HOH . T 6 HOH AAA 178 878 88 HOH HOH . T 6 HOH AAA 179 879 227 HOH HOH . T 6 HOH AAA 180 880 14 HOH HOH . T 6 HOH AAA 181 881 249 HOH HOH . T 6 HOH AAA 182 882 288 HOH HOH . T 6 HOH AAA 183 883 257 HOH HOH . T 6 HOH AAA 184 884 344 HOH HOH . T 6 HOH AAA 185 885 37 HOH HOH . T 6 HOH AAA 186 886 309 HOH HOH . T 6 HOH AAA 187 887 239 HOH HOH . T 6 HOH AAA 188 888 200 HOH HOH . T 6 HOH AAA 189 889 20 HOH HOH . T 6 HOH AAA 190 890 157 HOH HOH . T 6 HOH AAA 191 891 228 HOH HOH . T 6 HOH AAA 192 892 292 HOH HOH . T 6 HOH AAA 193 893 343 HOH HOH . T 6 HOH AAA 194 894 264 HOH HOH . T 6 HOH AAA 195 895 346 HOH HOH . T 6 HOH AAA 196 896 230 HOH HOH . T 6 HOH AAA 197 897 368 HOH HOH . T 6 HOH AAA 198 898 313 HOH HOH . T 6 HOH AAA 199 899 98 HOH HOH . T 6 HOH AAA 200 900 60 HOH HOH . T 6 HOH AAA 201 901 78 HOH HOH . T 6 HOH AAA 202 902 139 HOH HOH . T 6 HOH AAA 203 903 362 HOH HOH . T 6 HOH AAA 204 904 370 HOH HOH . T 6 HOH AAA 205 905 371 HOH HOH . T 6 HOH AAA 206 906 251 HOH HOH . T 6 HOH AAA 207 907 365 HOH HOH . T 6 HOH AAA 208 908 372 HOH HOH . T 6 HOH AAA 209 909 186 HOH HOH . T 6 HOH AAA 210 910 213 HOH HOH . T 6 HOH AAA 211 911 280 HOH HOH . T 6 HOH AAA 212 912 311 HOH HOH . T 6 HOH AAA 213 913 342 HOH HOH . T 6 HOH AAA 214 914 159 HOH HOH . T 6 HOH AAA 215 915 281 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -25.14 -15.74 0.169 1 8.74 0 C1 GOL 603 AAA 1 HETATM 2 O O1 GOL . . . D 3 -26.149 -14.967 0.805 1 9.64 0 O1 GOL 603 AAA 1 HETATM 3 C C2 GOL . . . D 3 -25.701 -16.524 -1.004 1 8.89 0 C2 GOL 603 AAA 1 HETATM 4 O O2 GOL . . . D 3 -26.144 -15.576 -1.985 1 8.67 0 O2 GOL 603 AAA 1 HETATM 5 C C3 GOL . . . D 3 -26.814 -17.462 -0.607 1 9.26 0 C3 GOL 603 AAA 1 HETATM 6 O O3 GOL . . . D 3 -27.3 -18.202 -1.706 1 10.39 0 O3 GOL 603 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 483 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #