data_7PHE # _model_server_result.job_id y17DMo7EzSaOMcu59HOXjw _model_server_result.datetime_utc '2024-11-24 11:58:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7phe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7PHE # _exptl.entry_id 7PHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (1R,2R,4S)-2-ethyl-2,4,5,7-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.648 _cell.angle_gamma 90 _cell.entry_id 7PHE _cell.length_a 58.8 _cell.length_b 110.4 _cell.length_c 64.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H20 O8' _chem_comp.formula_weight 412.389 _chem_comp.id VAK _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (1R,2R,4S)-2-ethyl-2,4,5,7-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Aklavinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C1 VAK doub 358 n y C1 C2 VAK sing 359 n y C1 H1 VAK sing 360 n n C3 C2 VAK doub 361 n y C2 H2 VAK sing 362 n n C4 C3 VAK sing 363 n y C3 H3 VAK sing 364 n n C16 C4 VAK doub 365 n y O19 C4 VAK sing 366 n n C17 C5 VAK sing 367 n n O20 C5 VAK doub 368 n n C5 C16 VAK sing 369 n n C20 C6 VAK doub 370 n y O21 C6 VAK sing 371 n n C6 C17 VAK sing 372 n y C8 C7 VAK sing 373 n n C7 O22 VAK sing 374 n n C7 C20 VAK sing 375 n n C7 H7 VAK sing 376 n n C8 C9 VAK sing 377 n n C8 H8 VAK sing 378 n n C8 H8A VAK sing 379 n n C13 C9 VAK sing 380 n n C9 O23 VAK sing 381 n n C9 C10 VAK sing 382 n n C14 C10 VAK sing 383 n n C10 C19 VAK sing 384 n n C10 H10 VAK sing 385 n n C19 C11 VAK doub 386 n y C11 C18 VAK sing 387 n y C11 H11 VAK sing 388 n n C18 C12 VAK sing 389 n n C12 O18 VAK doub 390 n n C12 C21 VAK sing 391 n n C22 C13 VAK sing 392 n n C13 H13 VAK sing 393 n n C13 H13A VAK sing 394 n n O17 C14 VAK doub 395 n n C14 O16 VAK sing 396 n n C15 O16 VAK sing 397 n n C15 H15 VAK sing 398 n n C15 H15A VAK sing 399 n n C15 H15B VAK sing 400 n n C16 C21 VAK sing 401 n y C17 C18 VAK doub 402 n y C20 C19 VAK sing 403 n y O19 HO19 VAK sing 404 n n O21 HO21 VAK sing 405 n n C22 H22 VAK sing 406 n n C22 H22A VAK sing 407 n n C22 H22B VAK sing 408 n n O22 HO22 VAK sing 409 n n O23 HO23 VAK sing 410 n n # _atom_sites.entry_id 7PHE _atom_sites.fract_transf_matrix[1][1] 0.017007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005739 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VAK A 1 401 391 VAK VAK . D 2 VAK B 1 401 391 VAK VAK . E 3 HOH A 1 501 89 HOH HOH . E 3 HOH A 2 502 42 HOH HOH . E 3 HOH A 3 503 66 HOH HOH . E 3 HOH A 4 504 139 HOH HOH . E 3 HOH A 5 505 115 HOH HOH . E 3 HOH A 6 506 95 HOH HOH . E 3 HOH A 7 507 20 HOH HOH . E 3 HOH A 8 508 54 HOH HOH . E 3 HOH A 9 509 92 HOH HOH . E 3 HOH A 10 510 13 HOH HOH . E 3 HOH A 11 511 29 HOH HOH . E 3 HOH A 12 512 39 HOH HOH . E 3 HOH A 13 513 52 HOH HOH . E 3 HOH A 14 514 36 HOH HOH . E 3 HOH A 15 515 6 HOH HOH . E 3 HOH A 16 516 110 HOH HOH . E 3 HOH A 17 517 35 HOH HOH . E 3 HOH A 18 518 38 HOH HOH . E 3 HOH A 19 519 113 HOH HOH . E 3 HOH A 20 520 56 HOH HOH . E 3 HOH A 21 521 9 HOH HOH . E 3 HOH A 22 522 1 HOH HOH . E 3 HOH A 23 523 78 HOH HOH . E 3 HOH A 24 524 32 HOH HOH . E 3 HOH A 25 525 67 HOH HOH . E 3 HOH A 26 526 102 HOH HOH . E 3 HOH A 27 527 26 HOH HOH . E 3 HOH A 28 528 111 HOH HOH . E 3 HOH A 29 529 33 HOH HOH . E 3 HOH A 30 530 121 HOH HOH . E 3 HOH A 31 531 55 HOH HOH . E 3 HOH A 32 532 25 HOH HOH . E 3 HOH A 33 533 64 HOH HOH . E 3 HOH A 34 534 70 HOH HOH . E 3 HOH A 35 535 16 HOH HOH . E 3 HOH A 36 536 75 HOH HOH . E 3 HOH A 37 537 99 HOH HOH . E 3 HOH A 38 538 135 HOH HOH . E 3 HOH A 39 539 118 HOH HOH . E 3 HOH A 40 540 57 HOH HOH . E 3 HOH A 41 541 51 HOH HOH . E 3 HOH A 42 542 123 HOH HOH . E 3 HOH A 43 543 65 HOH HOH . E 3 HOH A 44 544 50 HOH HOH . E 3 HOH A 45 545 105 HOH HOH . E 3 HOH A 46 546 44 HOH HOH . E 3 HOH A 47 547 30 HOH HOH . E 3 HOH A 48 548 3 HOH HOH . E 3 HOH A 49 549 87 HOH HOH . E 3 HOH A 50 550 91 HOH HOH . E 3 HOH A 51 551 130 HOH HOH . E 3 HOH A 52 552 62 HOH HOH . E 3 HOH A 53 553 71 HOH HOH . E 3 HOH A 54 554 140 HOH HOH . E 3 HOH A 55 555 43 HOH HOH . E 3 HOH A 56 556 107 HOH HOH . E 3 HOH A 57 557 47 HOH HOH . E 3 HOH A 58 558 94 HOH HOH . E 3 HOH A 59 559 74 HOH HOH . E 3 HOH A 60 560 23 HOH HOH . E 3 HOH A 61 561 68 HOH HOH . E 3 HOH A 62 562 141 HOH HOH . E 3 HOH A 63 563 53 HOH HOH . E 3 HOH A 64 564 126 HOH HOH . E 3 HOH A 65 565 97 HOH HOH . E 3 HOH A 66 566 90 HOH HOH . E 3 HOH A 67 567 73 HOH HOH . E 3 HOH A 68 568 129 HOH HOH . E 3 HOH A 69 569 122 HOH HOH . E 3 HOH A 70 570 133 HOH HOH . E 3 HOH A 71 571 85 HOH HOH . E 3 HOH A 72 572 98 HOH HOH . E 3 HOH A 73 573 127 HOH HOH . E 3 HOH A 74 574 119 HOH HOH . E 3 HOH A 75 575 61 HOH HOH . F 3 HOH B 1 501 142 HOH HOH . F 3 HOH B 2 502 93 HOH HOH . F 3 HOH B 3 503 31 HOH HOH . F 3 HOH B 4 504 59 HOH HOH . F 3 HOH B 5 505 83 HOH HOH . F 3 HOH B 6 506 76 HOH HOH . F 3 HOH B 7 507 125 HOH HOH . F 3 HOH B 8 508 101 HOH HOH . F 3 HOH B 9 509 14 HOH HOH . F 3 HOH B 10 510 8 HOH HOH . F 3 HOH B 11 511 80 HOH HOH . F 3 HOH B 12 512 27 HOH HOH . F 3 HOH B 13 513 58 HOH HOH . F 3 HOH B 14 514 103 HOH HOH . F 3 HOH B 15 515 46 HOH HOH . F 3 HOH B 16 516 77 HOH HOH . F 3 HOH B 17 517 24 HOH HOH . F 3 HOH B 18 518 60 HOH HOH . F 3 HOH B 19 519 40 HOH HOH . F 3 HOH B 20 520 22 HOH HOH . F 3 HOH B 21 521 108 HOH HOH . F 3 HOH B 22 522 45 HOH HOH . F 3 HOH B 23 523 88 HOH HOH . F 3 HOH B 24 524 120 HOH HOH . F 3 HOH B 25 525 28 HOH HOH . F 3 HOH B 26 526 37 HOH HOH . F 3 HOH B 27 527 106 HOH HOH . F 3 HOH B 28 528 86 HOH HOH . F 3 HOH B 29 529 7 HOH HOH . F 3 HOH B 30 530 100 HOH HOH . F 3 HOH B 31 531 109 HOH HOH . F 3 HOH B 32 532 34 HOH HOH . F 3 HOH B 33 533 11 HOH HOH . F 3 HOH B 34 534 4 HOH HOH . F 3 HOH B 35 535 10 HOH HOH . F 3 HOH B 36 536 131 HOH HOH . F 3 HOH B 37 537 48 HOH HOH . F 3 HOH B 38 538 41 HOH HOH . F 3 HOH B 39 539 2 HOH HOH . F 3 HOH B 40 540 72 HOH HOH . F 3 HOH B 41 541 15 HOH HOH . F 3 HOH B 42 542 19 HOH HOH . F 3 HOH B 43 543 104 HOH HOH . F 3 HOH B 44 544 63 HOH HOH . F 3 HOH B 45 545 17 HOH HOH . F 3 HOH B 46 546 5 HOH HOH . F 3 HOH B 47 547 69 HOH HOH . F 3 HOH B 48 548 49 HOH HOH . F 3 HOH B 49 549 128 HOH HOH . F 3 HOH B 50 550 79 HOH HOH . F 3 HOH B 51 551 117 HOH HOH . F 3 HOH B 52 552 114 HOH HOH . F 3 HOH B 53 553 82 HOH HOH . F 3 HOH B 54 554 21 HOH HOH . F 3 HOH B 55 555 12 HOH HOH . F 3 HOH B 56 556 124 HOH HOH . F 3 HOH B 57 557 18 HOH HOH . F 3 HOH B 58 558 138 HOH HOH . F 3 HOH B 59 559 84 HOH HOH . F 3 HOH B 60 560 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VAK . . . C 2 27.666 -17.653 18.587 0.97 33.42 ? C1 VAK 401 A 1 HETATM 2 C C2 VAK . . . C 2 28.504 -18.153 19.582 0.97 34.58 ? C2 VAK 401 A 1 HETATM 3 C C3 VAK . . . C 2 29.671 -18.858 19.292 0.97 32.63 ? C3 VAK 401 A 1 HETATM 4 C C4 VAK . . . C 2 30.053 -19.098 17.977 0.97 33.06 ? C4 VAK 401 A 1 HETATM 5 C C5 VAK . . . C 2 29.543 -18.811 15.445 0.97 33.64 ? C5 VAK 401 A 1 HETATM 6 C C6 VAK . . . C 2 28.963 -18.482 12.95 0.97 24.88 ? C6 VAK 401 A 1 HETATM 7 C C7 VAK . . . C 2 28.286 -18.097 10.502 0.97 37.51 ? C7 VAK 401 A 1 HETATM 8 C C8 VAK . . . C 2 26.933 -18.258 9.835 0.97 40.46 ? C8 VAK 401 A 1 HETATM 9 C C9 VAK . . . C 2 26.136 -16.968 9.968 0.97 43.32 ? C9 VAK 401 A 1 HETATM 10 C C10 VAK . . . C 2 25.837 -16.612 11.432 0.97 43.74 ? C10 VAK 401 A 1 HETATM 11 C C11 VAK . . . C 2 26.566 -17.035 13.762 0.97 29.03 ? C11 VAK 401 A 1 HETATM 12 C C12 VAK . . . C 2 27.07 -17.311 16.18 0.97 30.95 ? C12 VAK 401 A 1 HETATM 13 C C13 VAK . . . C 2 26.86 -15.837 9.251 0.97 51.14 ? C13 VAK 401 A 1 HETATM 14 C C14 VAK . . . C 2 25.713 -15.118 11.62 0.97 47.79 ? C14 VAK 401 A 1 HETATM 15 C C15 VAK . . . C 2 26.225 -13.63 13.528 0.97 47.07 ? C15 VAK 401 A 1 HETATM 16 C C16 VAK . . . C 2 29.195 -18.589 16.876 0.97 32.03 ? C16 VAK 401 A 1 HETATM 17 O O16 VAK . . . C 2 26.686 -14.364 12.392 0.97 53.74 ? O16 VAK 401 A 1 HETATM 18 C C17 VAK . . . C 2 28.645 -18.278 14.385 0.97 28.55 ? C17 VAK 401 A 1 HETATM 19 O O17 VAK . . . C 2 24.777 -14.498 11.144 0.97 46.43 ? O17 VAK 401 A 1 HETATM 20 C C18 VAK . . . C 2 27.411 -17.53 14.748 0.97 29.67 ? C18 VAK 401 A 1 HETATM 21 O O18 VAK . . . C 2 26.035 -16.682 16.487 0.97 34.15 ? O18 VAK 401 A 1 HETATM 22 C C19 VAK . . . C 2 26.816 -17.187 12.399 0.97 35.32 ? C19 VAK 401 A 1 HETATM 23 O O19 VAK . . . C 2 31.193 -19.79 17.703 0.97 44.94 ? O19 VAK 401 A 1 HETATM 24 C C20 VAK . . . C 2 28.027 -17.924 11.942 0.97 34.2 ? C20 VAK 401 A 1 HETATM 25 O O20 VAK . . . C 2 30.577 -19.439 15.131 0.97 32.36 ? O20 VAK 401 A 1 HETATM 26 C C21 VAK . . . C 2 27.965 -17.843 17.243 0.97 28.93 ? C21 VAK 401 A 1 HETATM 27 O O21 VAK . . . C 2 30.082 -19.16 12.575 0.97 39.52 ? O21 VAK 401 A 1 HETATM 28 C C22 VAK . . . C 2 25.985 -15.281 8.148 0.97 50.45 ? C22 VAK 401 A 1 HETATM 29 O O22 VAK . . . C 2 29.051 -19.286 10.288 0.97 36.62 ? O22 VAK 401 A 1 HETATM 30 O O23 VAK . . . C 2 24.889 -17.181 9.298 0.97 49.3 ? O23 VAK 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #