data_7PHF # _model_server_result.job_id D6IVRGJDQFW-K0HpZ1Hvvw _model_server_result.datetime_utc '2024-11-28 04:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7phf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 7PHF # _exptl.entry_id 7PHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.389 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (1R,2R,4S)-2-ethyl-2,4,5,7-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.303 _cell.angle_gamma 90 _cell.entry_id 7PHF _cell.length_a 60.007 _cell.length_b 102.415 _cell.length_c 122.193 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,L,M 1 1 C,D,H,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N # _chem_comp.formula 'C22 H20 O8' _chem_comp.formula_weight 412.389 _chem_comp.id VAK _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (1R,2R,4S)-2-ethyl-2,4,5,7-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Aklavinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C1 VAK doub 406 n y C1 C2 VAK sing 407 n y C1 H1 VAK sing 408 n n C3 C2 VAK doub 409 n y C2 H2 VAK sing 410 n n C4 C3 VAK sing 411 n y C3 H3 VAK sing 412 n n C16 C4 VAK doub 413 n y O19 C4 VAK sing 414 n n C17 C5 VAK sing 415 n n O20 C5 VAK doub 416 n n C5 C16 VAK sing 417 n n C20 C6 VAK doub 418 n y O21 C6 VAK sing 419 n n C6 C17 VAK sing 420 n y C8 C7 VAK sing 421 n n C7 O22 VAK sing 422 n n C7 C20 VAK sing 423 n n C7 H7 VAK sing 424 n n C8 C9 VAK sing 425 n n C8 H8 VAK sing 426 n n C8 H8A VAK sing 427 n n C13 C9 VAK sing 428 n n C9 O23 VAK sing 429 n n C9 C10 VAK sing 430 n n C14 C10 VAK sing 431 n n C10 C19 VAK sing 432 n n C10 H10 VAK sing 433 n n C19 C11 VAK doub 434 n y C11 C18 VAK sing 435 n y C11 H11 VAK sing 436 n n C18 C12 VAK sing 437 n n C12 O18 VAK doub 438 n n C12 C21 VAK sing 439 n n C22 C13 VAK sing 440 n n C13 H13 VAK sing 441 n n C13 H13A VAK sing 442 n n O17 C14 VAK doub 443 n n C14 O16 VAK sing 444 n n C15 O16 VAK sing 445 n n C15 H15 VAK sing 446 n n C15 H15A VAK sing 447 n n C15 H15B VAK sing 448 n n C16 C21 VAK sing 449 n y C17 C18 VAK doub 450 n y C20 C19 VAK sing 451 n y O19 HO19 VAK sing 452 n n O21 HO21 VAK sing 453 n n C22 H22 VAK sing 454 n n C22 H22A VAK sing 455 n n C22 H22B VAK sing 456 n n O22 HO22 VAK sing 457 n n O23 HO23 VAK sing 458 n n # _atom_sites.entry_id 7PHF _atom_sites.fract_transf_matrix[1][1] 0.016665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00273 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAH A 1 401 390 SAH SAH . F 2 SAH B 1 401 390 SAH SAH . G 3 VAK B 1 402 391 VAK VAK . H 2 SAH C 1 401 390 SAH SAH . I 3 VAK C 1 402 391 VAK VAK . J 2 SAH D 1 401 390 SAH SAH . K 3 VAK D 1 402 391 VAK VAK . L 4 HOH A 1 501 161 HOH HOH . L 4 HOH A 2 502 24 HOH HOH . L 4 HOH A 3 503 184 HOH HOH . L 4 HOH A 4 504 29 HOH HOH . L 4 HOH A 5 505 89 HOH HOH . L 4 HOH A 6 506 100 HOH HOH . L 4 HOH A 7 507 93 HOH HOH . L 4 HOH A 8 508 48 HOH HOH . L 4 HOH A 9 509 88 HOH HOH . L 4 HOH A 10 510 70 HOH HOH . L 4 HOH A 11 511 8 HOH HOH . L 4 HOH A 12 512 20 HOH HOH . L 4 HOH A 13 513 252 HOH HOH . L 4 HOH A 14 514 62 HOH HOH . L 4 HOH A 15 515 207 HOH HOH . L 4 HOH A 16 516 49 HOH HOH . L 4 HOH A 17 517 162 HOH HOH . L 4 HOH A 18 518 51 HOH HOH . L 4 HOH A 19 519 113 HOH HOH . L 4 HOH A 20 520 304 HOH HOH . L 4 HOH A 21 521 84 HOH HOH . L 4 HOH A 22 522 141 HOH HOH . L 4 HOH A 23 523 240 HOH HOH . L 4 HOH A 24 524 256 HOH HOH . L 4 HOH A 25 525 129 HOH HOH . L 4 HOH A 26 526 148 HOH HOH . L 4 HOH A 27 527 15 HOH HOH . L 4 HOH A 28 528 120 HOH HOH . L 4 HOH A 29 529 164 HOH HOH . L 4 HOH A 30 530 263 HOH HOH . L 4 HOH A 31 531 136 HOH HOH . L 4 HOH A 32 532 26 HOH HOH . L 4 HOH A 33 533 104 HOH HOH . L 4 HOH A 34 534 281 HOH HOH . L 4 HOH A 35 535 122 HOH HOH . L 4 HOH A 36 536 115 HOH HOH . L 4 HOH A 37 537 72 HOH HOH . L 4 HOH A 38 538 137 HOH HOH . L 4 HOH A 39 539 67 HOH HOH . L 4 HOH A 40 540 290 HOH HOH . L 4 HOH A 41 541 235 HOH HOH . L 4 HOH A 42 542 46 HOH HOH . L 4 HOH A 43 543 144 HOH HOH . L 4 HOH A 44 544 291 HOH HOH . L 4 HOH A 45 545 223 HOH HOH . L 4 HOH A 46 546 265 HOH HOH . L 4 HOH A 47 547 295 HOH HOH . L 4 HOH A 48 548 286 HOH HOH . L 4 HOH A 49 549 175 HOH HOH . L 4 HOH A 50 550 156 HOH HOH . L 4 HOH A 51 551 288 HOH HOH . M 4 HOH B 1 501 27 HOH HOH . M 4 HOH B 2 502 47 HOH HOH . M 4 HOH B 3 503 87 HOH HOH . M 4 HOH B 4 504 108 HOH HOH . M 4 HOH B 5 505 153 HOH HOH . M 4 HOH B 6 506 181 HOH HOH . M 4 HOH B 7 507 260 HOH HOH . M 4 HOH B 8 508 285 HOH HOH . M 4 HOH B 9 509 9 HOH HOH . M 4 HOH B 10 510 19 HOH HOH . M 4 HOH B 11 511 82 HOH HOH . M 4 HOH B 12 512 39 HOH HOH . M 4 HOH B 13 513 4 HOH HOH . M 4 HOH B 14 514 174 HOH HOH . M 4 HOH B 15 515 3 HOH HOH . M 4 HOH B 16 516 266 HOH HOH . M 4 HOH B 17 517 127 HOH HOH . M 4 HOH B 18 518 167 HOH HOH . M 4 HOH B 19 519 143 HOH HOH . M 4 HOH B 20 520 57 HOH HOH . M 4 HOH B 21 521 125 HOH HOH . M 4 HOH B 22 522 294 HOH HOH . M 4 HOH B 23 523 116 HOH HOH . M 4 HOH B 24 524 169 HOH HOH . M 4 HOH B 25 525 306 HOH HOH . M 4 HOH B 26 526 241 HOH HOH . M 4 HOH B 27 527 52 HOH HOH . M 4 HOH B 28 528 279 HOH HOH . M 4 HOH B 29 529 214 HOH HOH . M 4 HOH B 30 530 5 HOH HOH . M 4 HOH B 31 531 71 HOH HOH . M 4 HOH B 32 532 139 HOH HOH . M 4 HOH B 33 533 200 HOH HOH . M 4 HOH B 34 534 230 HOH HOH . M 4 HOH B 35 535 298 HOH HOH . M 4 HOH B 36 536 101 HOH HOH . M 4 HOH B 37 537 192 HOH HOH . M 4 HOH B 38 538 220 HOH HOH . M 4 HOH B 39 539 262 HOH HOH . M 4 HOH B 40 540 199 HOH HOH . N 4 HOH C 1 501 124 HOH HOH . N 4 HOH C 2 502 133 HOH HOH . N 4 HOH C 3 503 146 HOH HOH . N 4 HOH C 4 504 99 HOH HOH . N 4 HOH C 5 505 284 HOH HOH . N 4 HOH C 6 506 95 HOH HOH . N 4 HOH C 7 507 1 HOH HOH . N 4 HOH C 8 508 63 HOH HOH . N 4 HOH C 9 509 97 HOH HOH . N 4 HOH C 10 510 106 HOH HOH . N 4 HOH C 11 511 13 HOH HOH . N 4 HOH C 12 512 6 HOH HOH . N 4 HOH C 13 513 176 HOH HOH . N 4 HOH C 14 514 33 HOH HOH . N 4 HOH C 15 515 219 HOH HOH . N 4 HOH C 16 516 166 HOH HOH . N 4 HOH C 17 517 78 HOH HOH . N 4 HOH C 18 518 59 HOH HOH . N 4 HOH C 19 519 45 HOH HOH . N 4 HOH C 20 520 185 HOH HOH . N 4 HOH C 21 521 135 HOH HOH . N 4 HOH C 22 522 69 HOH HOH . N 4 HOH C 23 523 158 HOH HOH . N 4 HOH C 24 524 50 HOH HOH . N 4 HOH C 25 525 65 HOH HOH . N 4 HOH C 26 526 73 HOH HOH . N 4 HOH C 27 527 14 HOH HOH . N 4 HOH C 28 528 154 HOH HOH . N 4 HOH C 29 529 131 HOH HOH . N 4 HOH C 30 530 270 HOH HOH . N 4 HOH C 31 531 83 HOH HOH . N 4 HOH C 32 532 145 HOH HOH . N 4 HOH C 33 533 170 HOH HOH . N 4 HOH C 34 534 40 HOH HOH . N 4 HOH C 35 535 269 HOH HOH . N 4 HOH C 36 536 165 HOH HOH . N 4 HOH C 37 537 150 HOH HOH . N 4 HOH C 38 538 41 HOH HOH . N 4 HOH C 39 539 179 HOH HOH . N 4 HOH C 40 540 157 HOH HOH . N 4 HOH C 41 541 254 HOH HOH . N 4 HOH C 42 542 251 HOH HOH . N 4 HOH C 43 543 79 HOH HOH . N 4 HOH C 44 544 56 HOH HOH . N 4 HOH C 45 545 206 HOH HOH . N 4 HOH C 46 546 163 HOH HOH . N 4 HOH C 47 547 155 HOH HOH . N 4 HOH C 48 548 212 HOH HOH . N 4 HOH C 49 549 190 HOH HOH . N 4 HOH C 50 550 201 HOH HOH . N 4 HOH C 51 551 299 HOH HOH . N 4 HOH C 52 552 274 HOH HOH . N 4 HOH C 53 553 273 HOH HOH . N 4 HOH C 54 554 226 HOH HOH . N 4 HOH C 55 555 215 HOH HOH . N 4 HOH C 56 556 242 HOH HOH . N 4 HOH C 57 557 247 HOH HOH . N 4 HOH C 58 558 23 HOH HOH . N 4 HOH C 59 559 198 HOH HOH . N 4 HOH C 60 560 296 HOH HOH . N 4 HOH C 61 561 245 HOH HOH . O 4 HOH D 1 501 268 HOH HOH . O 4 HOH D 2 502 76 HOH HOH . O 4 HOH D 3 503 58 HOH HOH . O 4 HOH D 4 504 12 HOH HOH . O 4 HOH D 5 505 55 HOH HOH . O 4 HOH D 6 506 255 HOH HOH . O 4 HOH D 7 507 7 HOH HOH . O 4 HOH D 8 508 186 HOH HOH . O 4 HOH D 9 509 253 HOH HOH . O 4 HOH D 10 510 21 HOH HOH . O 4 HOH D 11 511 18 HOH HOH . O 4 HOH D 12 512 36 HOH HOH . O 4 HOH D 13 513 44 HOH HOH . O 4 HOH D 14 514 171 HOH HOH . O 4 HOH D 15 515 35 HOH HOH . O 4 HOH D 16 516 248 HOH HOH . O 4 HOH D 17 517 32 HOH HOH . O 4 HOH D 18 518 16 HOH HOH . O 4 HOH D 19 519 37 HOH HOH . O 4 HOH D 20 520 66 HOH HOH . O 4 HOH D 21 521 34 HOH HOH . O 4 HOH D 22 522 216 HOH HOH . O 4 HOH D 23 523 123 HOH HOH . O 4 HOH D 24 524 280 HOH HOH . O 4 HOH D 25 525 25 HOH HOH . O 4 HOH D 26 526 187 HOH HOH . O 4 HOH D 27 527 300 HOH HOH . O 4 HOH D 28 528 2 HOH HOH . O 4 HOH D 29 529 114 HOH HOH . O 4 HOH D 30 530 28 HOH HOH . O 4 HOH D 31 531 38 HOH HOH . O 4 HOH D 32 532 261 HOH HOH . O 4 HOH D 33 533 96 HOH HOH . O 4 HOH D 34 534 81 HOH HOH . O 4 HOH D 35 535 31 HOH HOH . O 4 HOH D 36 536 53 HOH HOH . O 4 HOH D 37 537 149 HOH HOH . O 4 HOH D 38 538 86 HOH HOH . O 4 HOH D 39 539 60 HOH HOH . O 4 HOH D 40 540 182 HOH HOH . O 4 HOH D 41 541 121 HOH HOH . O 4 HOH D 42 542 64 HOH HOH . O 4 HOH D 43 543 196 HOH HOH . O 4 HOH D 44 544 68 HOH HOH . O 4 HOH D 45 545 257 HOH HOH . O 4 HOH D 46 546 75 HOH HOH . O 4 HOH D 47 547 61 HOH HOH . O 4 HOH D 48 548 119 HOH HOH . O 4 HOH D 49 549 209 HOH HOH . O 4 HOH D 50 550 275 HOH HOH . O 4 HOH D 51 551 105 HOH HOH . O 4 HOH D 52 552 77 HOH HOH . O 4 HOH D 53 553 147 HOH HOH . O 4 HOH D 54 554 289 HOH HOH . O 4 HOH D 55 555 277 HOH HOH . O 4 HOH D 56 556 92 HOH HOH . O 4 HOH D 57 557 85 HOH HOH . O 4 HOH D 58 558 278 HOH HOH . O 4 HOH D 59 559 301 HOH HOH . O 4 HOH D 60 560 188 HOH HOH . O 4 HOH D 61 561 91 HOH HOH . O 4 HOH D 62 562 177 HOH HOH . O 4 HOH D 63 563 140 HOH HOH . O 4 HOH D 64 564 308 HOH HOH . O 4 HOH D 65 565 225 HOH HOH . O 4 HOH D 66 566 151 HOH HOH . O 4 HOH D 67 567 246 HOH HOH . O 4 HOH D 68 568 217 HOH HOH . O 4 HOH D 69 569 117 HOH HOH . O 4 HOH D 70 570 293 HOH HOH . O 4 HOH D 71 571 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VAK . . . I 3 14.566 63.523 48.158 0.85 14.28 ? C1 VAK 402 C 1 HETATM 2 C C2 VAK . . . I 3 14.706 64.239 49.35 0.85 20 ? C2 VAK 402 C 1 HETATM 3 C C3 VAK . . . I 3 15.141 65.565 49.394 0.85 21.27 ? C3 VAK 402 C 1 HETATM 4 C C4 VAK . . . I 3 15.459 66.236 48.22 0.85 25.45 ? C4 VAK 402 C 1 HETATM 5 C C5 VAK . . . I 3 15.649 66.198 45.678 0.85 18.28 ? C5 VAK 402 C 1 HETATM 6 C C6 VAK . . . I 3 15.861 66.209 43.183 0.85 21.5 ? C6 VAK 402 C 1 HETATM 7 C C7 VAK . . . I 3 16.098 66.254 40.663 0.85 33.14 ? C7 VAK 402 C 1 HETATM 8 C C8 VAK . . . I 3 15.486 65.634 39.407 0.85 43.37 ? C8 VAK 402 C 1 HETATM 9 C C9 VAK . . . I 3 14.504 64.487 39.648 0.85 43.03 ? C9 VAK 402 C 1 HETATM 10 C C10 VAK . . . I 3 15.128 63.45 40.614 0.85 31.99 ? C10 VAK 402 C 1 HETATM 11 C C11 VAK . . . I 3 14.948 63.434 43.108 0.85 22.43 ? C11 VAK 402 C 1 HETATM 12 C C12 VAK . . . I 3 14.719 63.367 45.637 0.85 13.57 ? C12 VAK 402 C 1 HETATM 13 C C13 VAK . . . I 3 13.082 65.024 39.978 0.85 41.64 ? C13 VAK 402 C 1 HETATM 14 C C14 VAK . . . I 3 14.298 62.19 40.718 0.85 49.3 ? C14 VAK 402 C 1 HETATM 15 C C15 VAK . . . I 3 11.883 61.975 40.087 0.85 34.69 ? C15 VAK 402 C 1 HETATM 16 C C16 VAK . . . I 3 15.323 65.512 46.939 0.85 14.88 ? C16 VAK 402 C 1 HETATM 17 O O16 VAK . . . I 3 12.883 62.216 41.082 0.85 43.97 ? O16 VAK 402 C 1 HETATM 18 C C17 VAK . . . I 3 15.515 65.471 44.408 0.85 17.49 ? C17 VAK 402 C 1 HETATM 19 O O17 VAK . . . I 3 14.81 61.101 40.496 0.85 41.87 ? O17 VAK 402 C 1 HETATM 20 C C18 VAK . . . I 3 15.053 64.06 44.353 0.85 17.57 ? C18 VAK 402 C 1 HETATM 21 O O18 VAK . . . I 3 14.325 62.18 45.632 0.85 16.7 ? O18 VAK 402 C 1 HETATM 22 C C19 VAK . . . I 3 15.269 64.105 41.921 0.85 19.76 ? C19 VAK 402 C 1 HETATM 23 O O19 VAK . . . I 3 15.888 67.532 48.224 0.85 26.45 ? O19 VAK 402 C 1 HETATM 24 C C20 VAK . . . I 3 15.742 65.512 41.901 0.85 23.47 ? C20 VAK 402 C 1 HETATM 25 O O20 VAK . . . I 3 16.031 67.383 45.669 0.85 23.92 ? O20 VAK 402 C 1 HETATM 26 C C21 VAK . . . I 3 14.859 64.106 46.932 0.85 12.94 ? C21 VAK 402 C 1 HETATM 27 O O21 VAK . . . I 3 16.288 67.495 43.247 0.85 20.18 ? O21 VAK 402 C 1 HETATM 28 C C22 VAK . . . I 3 12.794 66.197 40.91 0.85 42.16 ? C22 VAK 402 C 1 HETATM 29 O O22 VAK . . . I 3 17.527 66.294 40.537 0.85 34.01 ? O22 VAK 402 C 1 HETATM 30 O O23 VAK . . . I 3 14.352 63.805 38.396 0.85 46.03 ? O23 VAK 402 C 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #