data_7PHX
#
_model_server_result.job_id            ksEX-VjSFOgIjT6xWEctcw 
_model_server_result.datetime_utc      '2024-11-12 20:39:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7phx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":602}' 
#
_entry.id    7PHX 
#
_exptl.entry_id    7PHX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PHX 
_cell.length_a            43.7 
_cell.length_b            80.788 
_cell.length_c            85.891 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PHX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 293 1_555 B SG CYS 119 H CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 B SG CYS 28 H CYS 348 1_555 B SG CYS 44 H CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 B SG CYS 173 H CYS 493 1_555 B SG CYS 187 H CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 B SG CYS 201 H CYS 521 1_555 B SG CYS 231 H CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
covale ? covale1 B ND2 ASN 53 H ASN 373 1_555 D C1 NAG . H NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 C C ASP 8 I ASP 8 1_555 C N SMF 9 I SMF 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 C C SMF 9 I SMF 9 1_555 C N ASP 10 I ASP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 B O ARG 233 H ARG 553 1_555 E NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc2 B O LYS 236 H LYS 556 1_555 E NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc3 E NA NA . H NA 602 1_555 G O HOH . H HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc4 E NA NA . H NA 602 1_555 G O HOH . H HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc5 E NA NA . H NA 602 1_555 G O HOH . H HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc6 E NA NA . H NA 602 1_555 G O HOH . H HOH 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7PHX 
_atom_sites.fract_transf_matrix[1][1]    0.022883 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012378 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011643 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG H 1 601 1 NAG NAG . 
E 5 NA H 1 602 1 NA NA . 
F 6 HOH L 1 401 91 HOH HOH . 
F 6 HOH L 2 402 126 HOH HOH . 
F 6 HOH L 3 403 34 HOH HOH . 
F 6 HOH L 4 404 55 HOH HOH . 
F 6 HOH L 5 405 92 HOH HOH . 
F 6 HOH L 6 406 117 HOH HOH . 
F 6 HOH L 7 407 62 HOH HOH . 
F 6 HOH L 8 408 104 HOH HOH . 
F 6 HOH L 9 409 98 HOH HOH . 
G 6 HOH H 1 701 19 HOH HOH . 
G 6 HOH H 2 702 53 HOH HOH . 
G 6 HOH H 3 703 101 HOH HOH . 
G 6 HOH H 4 704 68 HOH HOH . 
G 6 HOH H 5 705 85 HOH HOH . 
G 6 HOH H 6 706 39 HOH HOH . 
G 6 HOH H 7 707 64 HOH HOH . 
G 6 HOH H 8 708 9 HOH HOH . 
G 6 HOH H 9 709 94 HOH HOH . 
G 6 HOH H 10 710 46 HOH HOH . 
G 6 HOH H 11 711 16 HOH HOH . 
G 6 HOH H 12 712 72 HOH HOH . 
G 6 HOH H 13 713 130 HOH HOH . 
G 6 HOH H 14 714 137 HOH HOH . 
G 6 HOH H 15 715 36 HOH HOH . 
G 6 HOH H 16 716 112 HOH HOH . 
G 6 HOH H 17 717 134 HOH HOH . 
G 6 HOH H 18 718 40 HOH HOH . 
G 6 HOH H 19 719 70 HOH HOH . 
G 6 HOH H 20 720 43 HOH HOH . 
G 6 HOH H 21 721 86 HOH HOH . 
G 6 HOH H 22 722 81 HOH HOH . 
G 6 HOH H 23 723 3 HOH HOH . 
G 6 HOH H 24 724 20 HOH HOH . 
G 6 HOH H 25 725 89 HOH HOH . 
G 6 HOH H 26 726 69 HOH HOH . 
G 6 HOH H 27 727 78 HOH HOH . 
G 6 HOH H 28 728 10 HOH HOH . 
G 6 HOH H 29 729 15 HOH HOH . 
G 6 HOH H 30 730 76 HOH HOH . 
G 6 HOH H 31 731 1 HOH HOH . 
G 6 HOH H 32 732 77 HOH HOH . 
G 6 HOH H 33 733 37 HOH HOH . 
G 6 HOH H 34 734 56 HOH HOH . 
G 6 HOH H 35 735 38 HOH HOH . 
G 6 HOH H 36 736 31 HOH HOH . 
G 6 HOH H 37 737 5 HOH HOH . 
G 6 HOH H 38 738 41 HOH HOH . 
G 6 HOH H 39 739 47 HOH HOH . 
G 6 HOH H 40 740 4 HOH HOH . 
G 6 HOH H 41 741 24 HOH HOH . 
G 6 HOH H 42 742 80 HOH HOH . 
G 6 HOH H 43 743 21 HOH HOH . 
G 6 HOH H 44 744 45 HOH HOH . 
G 6 HOH H 45 745 118 HOH HOH . 
G 6 HOH H 46 746 7 HOH HOH . 
G 6 HOH H 47 747 23 HOH HOH . 
G 6 HOH H 48 748 28 HOH HOH . 
G 6 HOH H 49 749 108 HOH HOH . 
G 6 HOH H 50 750 65 HOH HOH . 
G 6 HOH H 51 751 124 HOH HOH . 
G 6 HOH H 52 752 128 HOH HOH . 
G 6 HOH H 53 753 116 HOH HOH . 
G 6 HOH H 54 754 44 HOH HOH . 
G 6 HOH H 55 755 29 HOH HOH . 
G 6 HOH H 56 756 61 HOH HOH . 
G 6 HOH H 57 757 18 HOH HOH . 
G 6 HOH H 58 758 12 HOH HOH . 
G 6 HOH H 59 759 49 HOH HOH . 
G 6 HOH H 60 760 60 HOH HOH . 
G 6 HOH H 61 761 42 HOH HOH . 
G 6 HOH H 62 762 50 HOH HOH . 
G 6 HOH H 63 763 13 HOH HOH . 
G 6 HOH H 64 764 11 HOH HOH . 
G 6 HOH H 65 765 14 HOH HOH . 
G 6 HOH H 66 766 30 HOH HOH . 
G 6 HOH H 67 767 66 HOH HOH . 
G 6 HOH H 68 768 2 HOH HOH . 
G 6 HOH H 69 769 27 HOH HOH . 
G 6 HOH H 70 770 73 HOH HOH . 
G 6 HOH H 71 771 17 HOH HOH . 
G 6 HOH H 72 772 67 HOH HOH . 
G 6 HOH H 73 773 90 HOH HOH . 
G 6 HOH H 74 774 103 HOH HOH . 
G 6 HOH H 75 775 8 HOH HOH . 
G 6 HOH H 76 776 57 HOH HOH . 
G 6 HOH H 77 777 100 HOH HOH . 
G 6 HOH H 78 778 131 HOH HOH . 
G 6 HOH H 79 779 97 HOH HOH . 
G 6 HOH H 80 780 83 HOH HOH . 
G 6 HOH H 81 781 58 HOH HOH . 
G 6 HOH H 82 782 138 HOH HOH . 
G 6 HOH H 83 783 48 HOH HOH . 
G 6 HOH H 84 784 95 HOH HOH . 
G 6 HOH H 85 785 84 HOH HOH . 
G 6 HOH H 86 786 102 HOH HOH . 
G 6 HOH H 87 787 127 HOH HOH . 
G 6 HOH H 88 788 33 HOH HOH . 
G 6 HOH H 89 789 74 HOH HOH . 
G 6 HOH H 90 790 54 HOH HOH . 
G 6 HOH H 91 791 109 HOH HOH . 
G 6 HOH H 92 792 136 HOH HOH . 
G 6 HOH H 93 793 22 HOH HOH . 
G 6 HOH H 94 794 135 HOH HOH . 
G 6 HOH H 95 795 107 HOH HOH . 
G 6 HOH H 96 796 6 HOH HOH . 
G 6 HOH H 97 797 114 HOH HOH . 
G 6 HOH H 98 798 51 HOH HOH . 
G 6 HOH H 99 799 122 HOH HOH . 
G 6 HOH H 100 800 75 HOH HOH . 
G 6 HOH H 101 801 106 HOH HOH . 
G 6 HOH H 102 802 129 HOH HOH . 
G 6 HOH H 103 803 87 HOH HOH . 
G 6 HOH H 104 804 119 HOH HOH . 
G 6 HOH H 105 805 82 HOH HOH . 
G 6 HOH H 106 806 125 HOH HOH . 
G 6 HOH H 107 807 120 HOH HOH . 
G 6 HOH H 108 808 113 HOH HOH . 
G 6 HOH H 109 809 111 HOH HOH . 
G 6 HOH H 110 810 96 HOH HOH . 
G 6 HOH H 111 811 123 HOH HOH . 
H 6 HOH I 1 201 79 HOH HOH . 
H 6 HOH I 2 202 71 HOH HOH . 
H 6 HOH I 3 203 35 HOH HOH . 
H 6 HOH I 4 204 25 HOH HOH . 
H 6 HOH I 5 205 93 HOH HOH . 
H 6 HOH I 6 206 63 HOH HOH . 
H 6 HOH I 7 207 52 HOH HOH . 
H 6 HOH I 8 208 59 HOH HOH . 
H 6 HOH I 9 209 32 HOH HOH . 
H 6 HOH I 10 210 26 HOH HOH . 
H 6 HOH I 11 211 115 HOH HOH . 
H 6 HOH I 12 212 133 HOH HOH . 
H 6 HOH I 13 213 132 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               17.185 
_atom_site.Cartn_y               9.367 
_atom_site.Cartn_z               5.05 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        43.55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#