data_7PI4
#
_model_server_result.job_id            tex_4Xg6Dsalmk37CZvXdA 
_model_server_result.datetime_utc      '2024-11-18 16:45:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pi4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":706}' 
#
_entry.id    7PI4 
#
_exptl.entry_id    7PI4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PI4 
_cell.length_a            59.55 
_cell.length_b            77.26 
_cell.length_c            175.18 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PI4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 P N N 
? 7 Q N N 
? 7 U N N 
? 7 V N N 
? 7 W N N 
? 7 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ARG 152 AAA ARG 210 1_555 L CA CA . AAA CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc2 A O GLY 154 AAA GLY 212 1_555 L CA CA . AAA CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc3 L CA CA . AAA CA 308 1_555 Z O HOH . BBB HOH 310 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc4 L CA CA . AAA CA 308 1_555 AA O HOH . CCC HOH 304 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc5 L CA CA . AAA CA 308 1_555 AA O HOH . CCC HOH 313 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc6 L CA CA . AAA CA 308 1_555 AA O HOH . CCC HOH 315 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 218 n n 
C1 C2 EDO sing 219 n n 
C1 H11 EDO sing 220 n n 
C1 H12 EDO sing 221 n n 
O1 HO1 EDO sing 222 n n 
C2 O2 EDO sing 223 n n 
C2 H21 EDO sing 224 n n 
C2 H22 EDO sing 225 n n 
O2 HO2 EDO sing 226 n n 
#
_atom_sites.entry_id                     7PI4 
_atom_sites.fract_transf_matrix[1][1]    0.016793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005708 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 7QB AAA 1 301 1 7QB LIG . 
F 6 PEG AAA 1 302 2 PEG PEG . 
G 7 EDO AAA 1 303 2 EDO EDO . 
H 7 EDO AAA 1 304 6 EDO EDO . 
I 7 EDO AAA 1 305 7 EDO EDO . 
J 7 EDO AAA 1 306 8 EDO EDO . 
K 7 EDO AAA 1 307 10 EDO EDO . 
L 8 CA AAA 1 308 1 CA CA . 
M 7 EDO BBB 1 201 12 EDO EDO . 
N 7 EDO BBB 1 202 13 EDO EDO . 
O 7 EDO CCC 1 201 1 EDO EDO . 
P 7 EDO CCC 1 202 3 EDO EDO . 
Q 7 EDO CCC 1 203 19 EDO EDO . 
R 6 PEG DDD 1 701 1 PEG PEG . 
S 6 PEG DDD 1 702 3 PEG PEG . 
T 6 PEG DDD 1 703 4 PEG PEG . 
U 7 EDO DDD 1 704 4 EDO EDO . 
V 7 EDO DDD 1 705 11 EDO EDO . 
W 7 EDO DDD 1 706 16 EDO EDO . 
X 7 EDO DDD 1 707 17 EDO EDO . 
Y 9 HOH AAA 1 401 79 HOH HOH . 
Y 9 HOH AAA 2 402 24 HOH HOH . 
Y 9 HOH AAA 3 403 23 HOH HOH . 
Y 9 HOH AAA 4 404 86 HOH HOH . 
Y 9 HOH AAA 5 405 48 HOH HOH . 
Y 9 HOH AAA 6 406 82 HOH HOH . 
Y 9 HOH AAA 7 407 100 HOH HOH . 
Y 9 HOH AAA 8 408 45 HOH HOH . 
Y 9 HOH AAA 9 409 101 HOH HOH . 
Y 9 HOH AAA 10 410 84 HOH HOH . 
Y 9 HOH AAA 11 411 85 HOH HOH . 
Y 9 HOH AAA 12 412 83 HOH HOH . 
Y 9 HOH AAA 13 413 37 HOH HOH . 
Y 9 HOH AAA 14 414 138 HOH HOH . 
Y 9 HOH AAA 15 415 104 HOH HOH . 
Y 9 HOH AAA 16 416 99 HOH HOH . 
Y 9 HOH AAA 17 417 106 HOH HOH . 
Y 9 HOH AAA 18 418 139 HOH HOH . 
Y 9 HOH AAA 19 419 135 HOH HOH . 
Y 9 HOH AAA 20 420 56 HOH HOH . 
Y 9 HOH AAA 21 421 19 HOH HOH . 
Y 9 HOH AAA 22 422 28 HOH HOH . 
Y 9 HOH AAA 23 423 4 HOH HOH . 
Y 9 HOH AAA 24 424 36 HOH HOH . 
Y 9 HOH AAA 25 425 78 HOH HOH . 
Y 9 HOH AAA 26 426 18 HOH HOH . 
Y 9 HOH AAA 27 427 133 HOH HOH . 
Y 9 HOH AAA 28 428 13 HOH HOH . 
Y 9 HOH AAA 29 429 102 HOH HOH . 
Y 9 HOH AAA 30 430 70 HOH HOH . 
Y 9 HOH AAA 31 431 103 HOH HOH . 
Y 9 HOH AAA 32 432 97 HOH HOH . 
Y 9 HOH AAA 33 433 50 HOH HOH . 
Y 9 HOH AAA 34 434 38 HOH HOH . 
Y 9 HOH AAA 35 435 98 HOH HOH . 
Y 9 HOH AAA 36 436 57 HOH HOH . 
Y 9 HOH AAA 37 437 14 HOH HOH . 
Y 9 HOH AAA 38 438 87 HOH HOH . 
Y 9 HOH AAA 39 439 80 HOH HOH . 
Y 9 HOH AAA 40 440 129 HOH HOH . 
Y 9 HOH AAA 41 441 145 HOH HOH . 
Y 9 HOH AAA 42 442 94 HOH HOH . 
Y 9 HOH AAA 43 443 107 HOH HOH . 
Y 9 HOH AAA 44 444 54 HOH HOH . 
Y 9 HOH AAA 45 445 134 HOH HOH . 
Y 9 HOH AAA 46 446 58 HOH HOH . 
Z 9 HOH BBB 1 301 47 HOH HOH . 
Z 9 HOH BBB 2 302 29 HOH HOH . 
Z 9 HOH BBB 3 303 51 HOH HOH . 
Z 9 HOH BBB 4 304 15 HOH HOH . 
Z 9 HOH BBB 5 305 21 HOH HOH . 
Z 9 HOH BBB 6 306 112 HOH HOH . 
Z 9 HOH BBB 7 307 69 HOH HOH . 
Z 9 HOH BBB 8 308 6 HOH HOH . 
Z 9 HOH BBB 9 309 61 HOH HOH . 
Z 9 HOH BBB 10 310 40 HOH HOH . 
Z 9 HOH BBB 11 311 110 HOH HOH . 
Z 9 HOH BBB 12 312 20 HOH HOH . 
Z 9 HOH BBB 13 313 81 HOH HOH . 
Z 9 HOH BBB 14 314 74 HOH HOH . 
Z 9 HOH BBB 15 315 140 HOH HOH . 
Z 9 HOH BBB 16 316 35 HOH HOH . 
Z 9 HOH BBB 17 317 109 HOH HOH . 
Z 9 HOH BBB 18 318 141 HOH HOH . 
Z 9 HOH BBB 19 319 73 HOH HOH . 
Z 9 HOH BBB 20 320 68 HOH HOH . 
Z 9 HOH BBB 21 321 77 HOH HOH . 
Z 9 HOH BBB 22 322 66 HOH HOH . 
Z 9 HOH BBB 23 323 64 HOH HOH . 
Z 9 HOH BBB 24 324 75 HOH HOH . 
Z 9 HOH BBB 25 325 150 HOH HOH . 
Z 9 HOH BBB 26 326 76 HOH HOH . 
Z 9 HOH BBB 27 327 147 HOH HOH . 
Z 9 HOH BBB 28 328 27 HOH HOH . 
Z 9 HOH BBB 29 329 149 HOH HOH . 
Z 9 HOH BBB 30 330 67 HOH HOH . 
Z 9 HOH BBB 31 331 148 HOH HOH . 
Z 9 HOH BBB 32 332 2 HOH HOH . 
Z 9 HOH BBB 33 333 105 HOH HOH . 
Z 9 HOH BBB 34 334 111 HOH HOH . 
Z 9 HOH BBB 35 335 72 HOH HOH . 
Z 9 HOH BBB 36 336 34 HOH HOH . 
Z 9 HOH BBB 37 337 108 HOH HOH . 
AA 9 HOH CCC 1 301 42 HOH HOH . 
AA 9 HOH CCC 2 302 39 HOH HOH . 
AA 9 HOH CCC 3 303 142 HOH HOH . 
AA 9 HOH CCC 4 304 41 HOH HOH . 
AA 9 HOH CCC 5 305 115 HOH HOH . 
AA 9 HOH CCC 6 306 1 HOH HOH . 
AA 9 HOH CCC 7 307 116 HOH HOH . 
AA 9 HOH CCC 8 308 143 HOH HOH . 
AA 9 HOH CCC 9 309 8 HOH HOH . 
AA 9 HOH CCC 10 310 33 HOH HOH . 
AA 9 HOH CCC 11 311 113 HOH HOH . 
AA 9 HOH CCC 12 312 10 HOH HOH . 
AA 9 HOH CCC 13 313 46 HOH HOH . 
AA 9 HOH CCC 14 314 114 HOH HOH . 
AA 9 HOH CCC 15 315 65 HOH HOH . 
AA 9 HOH CCC 16 316 137 HOH HOH . 
AA 9 HOH CCC 17 317 136 HOH HOH . 
AA 9 HOH CCC 18 318 117 HOH HOH . 
AA 9 HOH CCC 19 319 96 HOH HOH . 
AA 9 HOH CCC 20 320 91 HOH HOH . 
AA 9 HOH CCC 21 321 144 HOH HOH . 
AA 9 HOH CCC 22 322 118 HOH HOH . 
AA 9 HOH CCC 23 323 92 HOH HOH . 
AA 9 HOH CCC 24 324 71 HOH HOH . 
BA 9 HOH DDD 1 801 44 HOH HOH . 
BA 9 HOH DDD 2 802 123 HOH HOH . 
BA 9 HOH DDD 3 803 89 HOH HOH . 
BA 9 HOH DDD 4 804 26 HOH HOH . 
BA 9 HOH DDD 5 805 52 HOH HOH . 
BA 9 HOH DDD 6 806 25 HOH HOH . 
BA 9 HOH DDD 7 807 12 HOH HOH . 
BA 9 HOH DDD 8 808 53 HOH HOH . 
BA 9 HOH DDD 9 809 132 HOH HOH . 
BA 9 HOH DDD 10 810 124 HOH HOH . 
BA 9 HOH DDD 11 811 146 HOH HOH . 
BA 9 HOH DDD 12 812 17 HOH HOH . 
BA 9 HOH DDD 13 813 119 HOH HOH . 
BA 9 HOH DDD 14 814 43 HOH HOH . 
BA 9 HOH DDD 15 815 32 HOH HOH . 
BA 9 HOH DDD 16 816 93 HOH HOH . 
BA 9 HOH DDD 17 817 60 HOH HOH . 
BA 9 HOH DDD 18 818 11 HOH HOH . 
BA 9 HOH DDD 19 819 59 HOH HOH . 
BA 9 HOH DDD 20 820 127 HOH HOH . 
BA 9 HOH DDD 21 821 63 HOH HOH . 
BA 9 HOH DDD 22 822 9 HOH HOH . 
BA 9 HOH DDD 23 823 126 HOH HOH . 
BA 9 HOH DDD 24 824 49 HOH HOH . 
BA 9 HOH DDD 25 825 5 HOH HOH . 
BA 9 HOH DDD 26 826 125 HOH HOH . 
BA 9 HOH DDD 27 827 120 HOH HOH . 
BA 9 HOH DDD 28 828 88 HOH HOH . 
BA 9 HOH DDD 29 829 128 HOH HOH . 
BA 9 HOH DDD 30 830 7 HOH HOH . 
BA 9 HOH DDD 31 831 122 HOH HOH . 
BA 9 HOH DDD 32 832 22 HOH HOH . 
BA 9 HOH DDD 33 833 30 HOH HOH . 
BA 9 HOH DDD 34 834 3 HOH HOH . 
BA 9 HOH DDD 35 835 121 HOH HOH . 
BA 9 HOH DDD 36 836 55 HOH HOH . 
BA 9 HOH DDD 37 837 130 HOH HOH . 
BA 9 HOH DDD 38 838 90 HOH HOH . 
BA 9 HOH DDD 39 839 16 HOH HOH . 
BA 9 HOH DDD 40 840 95 HOH HOH . 
BA 9 HOH DDD 41 841 31 HOH HOH . 
BA 9 HOH DDD 42 842 62 HOH HOH . 
BA 9 HOH DDD 43 843 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . W 7 63.94 -8.171 30.118 1 82.45 ? C1 EDO 706 DDD 1 
HETATM 2 O O1 EDO . . . W 7 65.191 -7.529 29.953 1 80.77 ? O1 EDO 706 DDD 1 
HETATM 3 C C2 EDO . . . W 7 62.915 -7.716 29.139 1 84.11 ? C2 EDO 706 DDD 1 
HETATM 4 O O2 EDO . . . W 7 63.289 -7.901 27.782 1 77.22 ? O2 EDO 706 DDD 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#