data_7PIL # _model_server_result.job_id HWiSV9lXPNw5ojT5ebpRfw _model_server_result.datetime_utc '2025-03-06 08:58:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JB","auth_seq_id":103}' # _entry.id 7PIL # _exptl.entry_id 7PIL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 568.914 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPHEROIDENE _entity.pdbx_number_of_molecules 26 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PIL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 IA N N ? 9 MA N N ? 9 OA N N ? 9 QA N N ? 9 SA N N ? 9 UA N N ? 9 WA N N ? 9 YA N N ? 9 AB N N ? 9 BB N N ? 9 DB N N ? 9 EB N N ? 9 GB N N ? 9 IB N N ? 9 JB N N ? 9 LB N N ? 9 MB N N ? 9 OB N N ? 9 QB N N ? 9 SB N N ? 9 UB N N ? 9 WB N N ? 9 YB N N ? 9 DC N N ? 9 JC N N ? 9 ZC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 DA NE2 HIS 190 L HIS 190 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 DA NE2 HIS 230 L HIS 230 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 EA NE2 HIS 219 M HIS 219 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 EA OE1 GLU 234 M GLU 234 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 EA OE2 GLU 234 M GLU 234 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc6 EA NE2 HIS 266 M HIS 266 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C41 H60 O' _chem_comp.formula_weight 568.914 _chem_comp.id SPO _chem_comp.mon_nstd_flag . _chem_comp.name SPHEROIDENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 O1 SPO sing 1007 n n CM1 HM11 SPO sing 1008 n n CM1 HM12 SPO sing 1009 n n CM1 HM13 SPO sing 1010 n n O1 C1 SPO sing 1011 n n C1 C2 SPO sing 1012 n n C1 C3 SPO sing 1013 n n C1 C4 SPO sing 1014 n n C2 H21A SPO sing 1015 n n C2 H22A SPO sing 1016 n n C2 H23 SPO sing 1017 n n C3 H31 SPO sing 1018 n n C3 H32A SPO sing 1019 n n C3 H33 SPO sing 1020 n n C4 C5 SPO sing 1021 n n C4 H41 SPO sing 1022 n n C4 H42 SPO sing 1023 n n C5 C6 SPO doub 1024 e n C5 H5 SPO sing 1025 n n C6 C7 SPO sing 1026 n n C6 H6 SPO sing 1027 n n C7 C8 SPO sing 1028 n n C7 C9 SPO doub 1029 e n C8 H81 SPO sing 1030 n n C8 H82 SPO sing 1031 n n C8 H83 SPO sing 1032 n n C9 C10 SPO sing 1033 n n C9 H9 SPO sing 1034 n n C10 C11 SPO doub 1035 e n C10 H10 SPO sing 1036 n n C11 C12 SPO sing 1037 n n C11 H11 SPO sing 1038 n n C12 C13 SPO sing 1039 n n C12 C14 SPO doub 1040 e n C13 H131 SPO sing 1041 n n C13 H132 SPO sing 1042 n n C13 H133 SPO sing 1043 n n C14 C15 SPO sing 1044 n n C14 H14 SPO sing 1045 n n C15 C16 SPO doub 1046 e n C15 H15 SPO sing 1047 n n C16 C17 SPO sing 1048 n n C16 H16 SPO sing 1049 n n C17 C18 SPO sing 1050 n n C17 C19 SPO doub 1051 z n C18 H181 SPO sing 1052 n n C18 H182 SPO sing 1053 n n C18 H183 SPO sing 1054 n n C19 C20 SPO sing 1055 n n C19 H19 SPO sing 1056 n n C20 C21 SPO doub 1057 e n C20 H20 SPO sing 1058 n n C21 C22 SPO sing 1059 n n C21 H21 SPO sing 1060 n n C22 C23 SPO doub 1061 e n C22 H22 SPO sing 1062 n n C23 C24 SPO sing 1063 n n C23 C25 SPO sing 1064 n n C24 H241 SPO sing 1065 n n C24 H242 SPO sing 1066 n n C24 H243 SPO sing 1067 n n C25 C26 SPO doub 1068 e n C25 H25 SPO sing 1069 n n C26 C27 SPO sing 1070 n n C26 H26 SPO sing 1071 n n C27 C28 SPO doub 1072 e n C27 H27 SPO sing 1073 n n C28 C29 SPO sing 1074 n n C28 C30 SPO sing 1075 n n C29 H291 SPO sing 1076 n n C29 H292 SPO sing 1077 n n C29 H293 SPO sing 1078 n n C30 C31 SPO sing 1079 n n C30 H301 SPO sing 1080 n n C30 H302 SPO sing 1081 n n C31 C32 SPO sing 1082 n n C31 H311 SPO sing 1083 n n C31 H312 SPO sing 1084 n n C32 C33 SPO doub 1085 e n C32 H32 SPO sing 1086 n n C33 C34 SPO sing 1087 n n C33 C35 SPO sing 1088 n n C34 H341 SPO sing 1089 n n C34 H342 SPO sing 1090 n n C34 H343 SPO sing 1091 n n C35 C36 SPO sing 1092 n n C35 H351 SPO sing 1093 n n C35 H352 SPO sing 1094 n n C36 C37 SPO sing 1095 n n C36 H361 SPO sing 1096 n n C36 H362 SPO sing 1097 n n C37 C38 SPO doub 1098 n n C37 H37 SPO sing 1099 n n C38 C39 SPO sing 1100 n n C38 C40 SPO sing 1101 n n C39 H391 SPO sing 1102 n n C39 H392 SPO sing 1103 n n C39 H393 SPO sing 1104 n n C40 H401 SPO sing 1105 n n C40 H402 SPO sing 1106 n n C40 H403 SPO sing 1107 n n # _atom_sites.entry_id 7PIL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code HA 8 BCL AA 1 1001 1001 BCL BCL . IA 9 SPO AA 1 1002 1000 SPO SPO . JA 10 LMT AA 1 1003 908 LMT LMT . KA 8 BCL AB 1 101 1602 BCL BCL . LA 11 3PE AB 1 102 1603 3PE 3PE . MA 9 SPO AB 1 103 1000 SPO SPO . NA 10 LMT AB 1 104 913 LMT LMT . OA 9 SPO AC 1 101 1000 SPO SPO . PA 8 BCL AC 1 102 1602 BCL BCL . QA 9 SPO AC 1 103 1000 SPO SPO . RA 11 3PE AC 1 104 1000 3PE 3PE . SA 9 SPO AD 1 101 1000 SPO SPO . TA 8 BCL AD 1 102 1001 BCL BCL . UA 9 SPO AD 1 103 1000 SPO SPO . VA 8 BCL AE 1 101 1602 BCL BCL . WA 9 SPO AE 1 102 1000 SPO SPO . XA 8 BCL AE 1 103 1001 BCL BCL . YA 9 SPO AF 1 101 1000 SPO SPO . ZA 8 BCL AF 1 102 1602 BCL BCL . AB 9 SPO AF 1 103 1000 SPO SPO . BB 9 SPO AG 1 101 1000 SPO SPO . CB 8 BCL AG 1 102 1602 BCL BCL . DB 9 SPO AG 1 103 1000 SPO SPO . EB 9 SPO AH 1 101 1000 SPO SPO . FB 8 BCL AH 1 102 1602 BCL BCL . GB 9 SPO AH 1 103 1000 SPO SPO . HB 8 BCL AI 1 101 1602 BCL BCL . IB 9 SPO AI 1 102 1000 SPO SPO . JB 9 SPO AI 1 103 1000 SPO SPO . KB 8 BCL AJ 1 101 1602 BCL BCL . LB 9 SPO AJ 1 102 1000 SPO SPO . MB 9 SPO AJ 1 103 1000 SPO SPO . NB 8 BCL AK 1 101 1602 BCL BCL . OB 9 SPO AK 1 102 1000 SPO SPO . PB 8 BCL AK 1 103 1502 BCL BCL . QB 9 SPO AK 1 104 1000 SPO SPO . RB 8 BCL AL 1 1001 1001 BCL BCL . SB 9 SPO AL 1 1002 1000 SPO SPO . TB 8 BCL AM 1 1001 1001 BCL BCL . UB 9 SPO AM 1 1002 1000 SPO SPO . VB 8 BCL AM 1 1003 1001 BCL BCL . WB 9 SPO AM 1 1004 1000 SPO SPO . XB 8 BCL AN 1 101 1602 BCL BCL . YB 9 SPO BA 1 101 1000 SPO SPO . ZB 8 BCL BA 1 102 1000 BCL BCL . AC 8 BCL BB 1 1001 1001 BCL BCL . BC 8 BCL BC 1 101 1502 BCL BCL . CC 8 BCL BD 1 101 1502 BCL BCL . DC 9 SPO BE 1 1000 1000 SPO SPO . EC 8 BCL BF 1 101 1502 BCL BCL . FC 8 BCL BG 1 101 1502 BCL BCL . GC 8 BCL BH 1 101 1502 BCL BCL . HC 8 BCL BI 1 101 1502 BCL BCL . IC 8 BCL BJ 1 101 1502 BCL BCL . JC 9 SPO BL 1 101 1000 SPO SPO . KC 8 BCL BL 1 102 1502 BCL BCL . LC 8 BCL BN 1 101 1502 BCL BCL . MC 11 3PE H 1 301 606 3PE 3PE . NC 11 3PE H 1 302 607 3PE 3PE . OC 12 BPH L 1 301 402 BPH BPH . PC 13 U10 L 1 302 502 U10 U10 . QC 14 UQ1 L 1 303 503 UQ1 UQ1 . RC 8 BCL L 1 304 602 BCL BCL . SC 8 BCL L 1 305 604 BCL BCL . TC 10 LMT M 1 401 915 LMT LMT . UC 12 BPH M 1 402 401 BPH BPH . VC 8 BCL M 1 403 603 BCL BCL . WC 13 U10 M 1 404 501 U10 U10 . XC 15 CD4 M 1 405 604 CD4 CD4 . YC 8 BCL M 1 406 601 BCL BCL . ZC 9 SPO M 1 407 600 SPO SPO . AD 16 FE M 1 408 500 FE FE . BD 10 LMT X 1 101 914 LMT LMT . CD 17 HOH AB 1 201 1604 HOH HOH . DD 17 HOH H 1 401 605 HOH HOH . DD 17 HOH H 2 402 608 HOH HOH . ED 17 HOH X 1 201 921 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM1 SPO . . . JB 9 193.31 134.785 179.313 1 57.26 ? CM1 SPO 103 AI 1 HETATM 2 O O1 SPO . . . JB 9 191.883 134.745 179.239 1 56.27 ? O1 SPO 103 AI 1 HETATM 3 C C1 SPO . . . JB 9 191.277 133.469 178.896 1 55.86 ? C1 SPO 103 AI 1 HETATM 4 C C2 SPO . . . JB 9 189.778 133.707 178.886 1 54.79 ? C2 SPO 103 AI 1 HETATM 5 C C3 SPO . . . JB 9 191.66 132.454 179.956 1 54.03 ? C3 SPO 103 AI 1 HETATM 6 C C4 SPO . . . JB 9 191.752 133.035 177.504 1 55.32 ? C4 SPO 103 AI 1 HETATM 7 C C5 SPO . . . JB 9 191.14 131.761 176.991 1 52.97 ? C5 SPO 103 AI 1 HETATM 8 C C6 SPO . . . JB 9 191.402 131.236 175.806 1 49.42 ? C6 SPO 103 AI 1 HETATM 9 C C7 SPO . . . JB 9 190.842 130.013 175.243 1 49.64 ? C7 SPO 103 AI 1 HETATM 10 C C8 SPO . . . JB 9 189.604 129.447 175.881 1 51.67 ? C8 SPO 103 AI 1 HETATM 11 C C9 SPO . . . JB 9 191.397 129.492 174.118 1 47.13 ? C9 SPO 103 AI 1 HETATM 12 C C10 SPO . . . JB 9 190.983 128.334 173.379 1 44.79 ? C10 SPO 103 AI 1 HETATM 13 C C11 SPO . . . JB 9 191.592 127.943 172.233 1 41.45 ? C11 SPO 103 AI 1 HETATM 14 C C12 SPO . . . JB 9 191.249 126.82 171.364 1 40.82 ? C12 SPO 103 AI 1 HETATM 15 C C13 SPO . . . JB 9 189.903 126.176 171.541 1 43.74 ? C13 SPO 103 AI 1 HETATM 16 C C14 SPO . . . JB 9 192.122 126.454 170.389 1 38.94 ? C14 SPO 103 AI 1 HETATM 17 C C15 SPO . . . JB 9 191.968 125.436 169.389 1 39.22 ? C15 SPO 103 AI 1 HETATM 18 C C16 SPO . . . JB 9 192.741 125.425 168.272 1 38.06 ? C16 SPO 103 AI 1 HETATM 19 C C17 SPO . . . JB 9 192.717 124.499 167.14 1 36.84 ? C17 SPO 103 AI 1 HETATM 20 C C18 SPO . . . JB 9 192.035 123.172 167.32 1 35.77 ? C18 SPO 103 AI 1 HETATM 21 C C19 SPO . . . JB 9 193.36 124.86 165.998 1 32.33 ? C19 SPO 103 AI 1 HETATM 22 C C20 SPO . . . JB 9 193.498 124.129 164.77 1 30.63 ? C20 SPO 103 AI 1 HETATM 23 C C21 SPO . . . JB 9 194.142 124.695 163.706 1 27.91 ? C21 SPO 103 AI 1 HETATM 24 C C22 SPO . . . JB 9 194.4 124.151 162.389 1 25.1 ? C22 SPO 103 AI 1 HETATM 25 C C23 SPO . . . JB 9 194.768 124.874 161.292 1 21.86 ? C23 SPO 103 AI 1 HETATM 26 C C24 SPO . . . JB 9 194.947 126.358 161.376 1 20.8 ? C24 SPO 103 AI 1 HETATM 27 C C25 SPO . . . JB 9 195.029 124.258 159.998 1 24.04 ? C25 SPO 103 AI 1 HETATM 28 C C26 SPO . . . JB 9 194.961 122.98 159.604 1 27.18 ? C26 SPO 103 AI 1 HETATM 29 C C27 SPO . . . JB 9 195.239 122.648 158.231 1 28.3 ? C27 SPO 103 AI 1 HETATM 30 C C28 SPO . . . JB 9 195.075 121.478 157.594 1 30.91 ? C28 SPO 103 AI 1 HETATM 31 C C29 SPO . . . JB 9 194.575 120.239 158.281 1 33.74 ? C29 SPO 103 AI 1 HETATM 32 C C30 SPO . . . JB 9 195.37 121.322 156.12 1 28.49 ? C30 SPO 103 AI 1 HETATM 33 C C31 SPO . . . JB 9 196.507 120.362 155.726 1 30.65 ? C31 SPO 103 AI 1 HETATM 34 C C32 SPO . . . JB 9 196.531 120.131 154.239 1 33.11 ? C32 SPO 103 AI 1 HETATM 35 C C33 SPO . . . JB 9 195.748 119.315 153.538 1 36.09 ? C33 SPO 103 AI 1 HETATM 36 C C34 SPO . . . JB 9 194.699 118.44 154.162 1 36.88 ? C34 SPO 103 AI 1 HETATM 37 C C35 SPO . . . JB 9 195.873 119.189 152.039 1 36.73 ? C35 SPO 103 AI 1 HETATM 38 C C36 SPO . . . JB 9 196.83 118.067 151.601 1 38.58 ? C36 SPO 103 AI 1 HETATM 39 C C37 SPO . . . JB 9 196.584 117.635 150.183 1 40.11 ? C37 SPO 103 AI 1 HETATM 40 C C38 SPO . . . JB 9 195.62 116.846 149.731 1 41.92 ? C38 SPO 103 AI 1 HETATM 41 C C39 SPO . . . JB 9 195.477 116.486 148.282 1 40.75 ? C39 SPO 103 AI 1 HETATM 42 C C40 SPO . . . JB 9 194.594 116.222 150.63 1 41.56 ? C40 SPO 103 AI 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #