data_7PIL # _model_server_result.job_id 0oBYjJUHMbqPdIF8M5omqA _model_server_result.datetime_utc '2025-03-06 09:01:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QC","auth_seq_id":303}' # _entry.id 7PIL # _exptl.entry_id 7PIL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 250.29 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PIL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id QC _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 DA NE2 HIS 190 L HIS 190 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 DA NE2 HIS 230 L HIS 230 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 EA NE2 HIS 219 M HIS 219 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 EA OE1 GLU 234 M GLU 234 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 EA OE2 GLU 234 M GLU 234 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc6 EA NE2 HIS 266 M HIS 266 1_555 AD FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 1329 n n C1 C2 UQ1 sing 1330 n n C1 C6 UQ1 sing 1331 n n C2 O2 UQ1 sing 1332 n n C2 C3 UQ1 doub 1333 n n O2 CM2 UQ1 sing 1334 n n CM2 HM21 UQ1 sing 1335 n n CM2 HM22 UQ1 sing 1336 n n CM2 HM23 UQ1 sing 1337 n n C3 O3 UQ1 sing 1338 n n C3 C4 UQ1 sing 1339 n n O3 CM3 UQ1 sing 1340 n n CM3 HM31 UQ1 sing 1341 n n CM3 HM32 UQ1 sing 1342 n n CM3 HM33 UQ1 sing 1343 n n C4 O4 UQ1 doub 1344 n n C4 C5 UQ1 sing 1345 n n C5 CM5 UQ1 sing 1346 n n C5 C6 UQ1 doub 1347 n n CM5 HM51 UQ1 sing 1348 n n CM5 HM52 UQ1 sing 1349 n n CM5 HM53 UQ1 sing 1350 n n C6 C7 UQ1 sing 1351 n n C7 C8 UQ1 sing 1352 n n C7 H71 UQ1 sing 1353 n n C7 H72 UQ1 sing 1354 n n C8 C9 UQ1 doub 1355 n n C8 H8 UQ1 sing 1356 n n C9 C10 UQ1 sing 1357 n n C9 C11 UQ1 sing 1358 n n C10 H101 UQ1 sing 1359 n n C10 H102 UQ1 sing 1360 n n C10 H103 UQ1 sing 1361 n n C11 H111 UQ1 sing 1362 n n C11 H112 UQ1 sing 1363 n n C11 H113 UQ1 sing 1364 n n # _atom_sites.entry_id 7PIL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code HA 8 BCL AA 1 1001 1001 BCL BCL . IA 9 SPO AA 1 1002 1000 SPO SPO . JA 10 LMT AA 1 1003 908 LMT LMT . KA 8 BCL AB 1 101 1602 BCL BCL . LA 11 3PE AB 1 102 1603 3PE 3PE . MA 9 SPO AB 1 103 1000 SPO SPO . NA 10 LMT AB 1 104 913 LMT LMT . OA 9 SPO AC 1 101 1000 SPO SPO . PA 8 BCL AC 1 102 1602 BCL BCL . QA 9 SPO AC 1 103 1000 SPO SPO . RA 11 3PE AC 1 104 1000 3PE 3PE . SA 9 SPO AD 1 101 1000 SPO SPO . TA 8 BCL AD 1 102 1001 BCL BCL . UA 9 SPO AD 1 103 1000 SPO SPO . VA 8 BCL AE 1 101 1602 BCL BCL . WA 9 SPO AE 1 102 1000 SPO SPO . XA 8 BCL AE 1 103 1001 BCL BCL . YA 9 SPO AF 1 101 1000 SPO SPO . ZA 8 BCL AF 1 102 1602 BCL BCL . AB 9 SPO AF 1 103 1000 SPO SPO . BB 9 SPO AG 1 101 1000 SPO SPO . CB 8 BCL AG 1 102 1602 BCL BCL . DB 9 SPO AG 1 103 1000 SPO SPO . EB 9 SPO AH 1 101 1000 SPO SPO . FB 8 BCL AH 1 102 1602 BCL BCL . GB 9 SPO AH 1 103 1000 SPO SPO . HB 8 BCL AI 1 101 1602 BCL BCL . IB 9 SPO AI 1 102 1000 SPO SPO . JB 9 SPO AI 1 103 1000 SPO SPO . KB 8 BCL AJ 1 101 1602 BCL BCL . LB 9 SPO AJ 1 102 1000 SPO SPO . MB 9 SPO AJ 1 103 1000 SPO SPO . NB 8 BCL AK 1 101 1602 BCL BCL . OB 9 SPO AK 1 102 1000 SPO SPO . PB 8 BCL AK 1 103 1502 BCL BCL . QB 9 SPO AK 1 104 1000 SPO SPO . RB 8 BCL AL 1 1001 1001 BCL BCL . SB 9 SPO AL 1 1002 1000 SPO SPO . TB 8 BCL AM 1 1001 1001 BCL BCL . UB 9 SPO AM 1 1002 1000 SPO SPO . VB 8 BCL AM 1 1003 1001 BCL BCL . WB 9 SPO AM 1 1004 1000 SPO SPO . XB 8 BCL AN 1 101 1602 BCL BCL . YB 9 SPO BA 1 101 1000 SPO SPO . ZB 8 BCL BA 1 102 1000 BCL BCL . AC 8 BCL BB 1 1001 1001 BCL BCL . BC 8 BCL BC 1 101 1502 BCL BCL . CC 8 BCL BD 1 101 1502 BCL BCL . DC 9 SPO BE 1 1000 1000 SPO SPO . EC 8 BCL BF 1 101 1502 BCL BCL . FC 8 BCL BG 1 101 1502 BCL BCL . GC 8 BCL BH 1 101 1502 BCL BCL . HC 8 BCL BI 1 101 1502 BCL BCL . IC 8 BCL BJ 1 101 1502 BCL BCL . JC 9 SPO BL 1 101 1000 SPO SPO . KC 8 BCL BL 1 102 1502 BCL BCL . LC 8 BCL BN 1 101 1502 BCL BCL . MC 11 3PE H 1 301 606 3PE 3PE . NC 11 3PE H 1 302 607 3PE 3PE . OC 12 BPH L 1 301 402 BPH BPH . PC 13 U10 L 1 302 502 U10 U10 . QC 14 UQ1 L 1 303 503 UQ1 UQ1 . RC 8 BCL L 1 304 602 BCL BCL . SC 8 BCL L 1 305 604 BCL BCL . TC 10 LMT M 1 401 915 LMT LMT . UC 12 BPH M 1 402 401 BPH BPH . VC 8 BCL M 1 403 603 BCL BCL . WC 13 U10 M 1 404 501 U10 U10 . XC 15 CD4 M 1 405 604 CD4 CD4 . YC 8 BCL M 1 406 601 BCL BCL . ZC 9 SPO M 1 407 600 SPO SPO . AD 16 FE M 1 408 500 FE FE . BD 10 LMT X 1 101 914 LMT LMT . CD 17 HOH AB 1 201 1604 HOH HOH . DD 17 HOH H 1 401 605 HOH HOH . DD 17 HOH H 2 402 608 HOH HOH . ED 17 HOH X 1 201 921 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . QC 14 186.431 169.991 158.116 1 18.69 ? C1 UQ1 303 L 1 HETATM 2 O O1 UQ1 . . . QC 14 187.019 168.913 157.982 1 18.29 ? O1 UQ1 303 L 1 HETATM 3 C C2 UQ1 . . . QC 14 185.556 170.517 157.043 1 17.29 ? C2 UQ1 303 L 1 HETATM 4 O O2 UQ1 . . . QC 14 185.532 169.655 155.942 1 17.82 ? O2 UQ1 303 L 1 HETATM 5 C CM2 UQ1 . . . QC 14 184.684 169.844 154.8 1 16.88 ? CM2 UQ1 303 L 1 HETATM 6 C C3 UQ1 . . . QC 14 184.875 171.708 157.166 1 17.26 ? C3 UQ1 303 L 1 HETATM 7 O O3 UQ1 . . . QC 14 184.074 172.256 156.182 1 18.77 ? O3 UQ1 303 L 1 HETATM 8 C CM3 UQ1 . . . QC 14 183.521 173.569 156.078 1 18.46 ? CM3 UQ1 303 L 1 HETATM 9 C C4 UQ1 . . . QC 14 185.041 172.525 158.44 1 18.85 ? C4 UQ1 303 L 1 HETATM 10 O O4 UQ1 . . . QC 14 184.495 173.601 158.69 1 21.01 ? O4 UQ1 303 L 1 HETATM 11 C C5 UQ1 . . . QC 14 185.915 171.959 159.495 1 19.71 ? C5 UQ1 303 L 1 HETATM 12 C CM5 UQ1 . . . QC 14 186.01 172.81 160.703 1 21.62 ? CM5 UQ1 303 L 1 HETATM 13 C C6 UQ1 . . . QC 14 186.549 170.78 159.367 1 19.78 ? C6 UQ1 303 L 1 HETATM 14 C C7 UQ1 . . . QC 14 187.47 170.225 160.408 1 20.8 ? C7 UQ1 303 L 1 HETATM 15 C C8 UQ1 . . . QC 14 187.119 169.014 161.196 1 24.45 ? C8 UQ1 303 L 1 HETATM 16 C C9 UQ1 . . . QC 14 186.078 168.817 162.022 1 28.14 ? C9 UQ1 303 L 1 HETATM 17 C C10 UQ1 . . . QC 14 185.034 169.829 162.307 1 27.64 ? C10 UQ1 303 L 1 HETATM 18 C C11 UQ1 . . . QC 14 185.914 167.524 162.727 1 30.56 ? C11 UQ1 303 L 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #