data_7PJ5 # _model_server_result.job_id o2JeMPxK-cYD97tD7YSd-Q _model_server_result.datetime_utc '2024-11-21 14:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7PJ5 # _exptl.entry_id 7PJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PJ5 _cell.length_a 47.679 _cell.length_b 92.358 _cell.length_c 124.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 AdA 1 NAG AdA 708 NAG 2 n B NAG 2 AdA 2 NAG AeA 709 NAG 2 n B NAG 3 AdA 3 NAG AfA 710 NAG 2 n B NAG 4 AdA 4 NAG AgA 711 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 NAG . AdA NAG 1 1_555 B C1 NAG . AdA NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B O4 NAG . AdA NAG 2 1_555 B C1 NAG . AdA NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 B O4 NAG . AdA NAG 3 1_555 B C1 NAG . AdA NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? metalc ? metalc1 A OD2 ASP 16 AAA ASP 421 1_555 F CA CA . AAA CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OD2 ASP 18 AAA ASP 423 1_555 F CA CA . AAA CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc3 A OE1 GLU 20 AAA GLU 425 1_555 F CA CA . AAA CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A OD2 ASP 98 AAA ASP 503 1_555 F CA CA . AAA CA 704 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 A O GLY 115 AAA GLY 520 1_555 F CA CA . AAA CA 704 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 291 n n C1 C2 PEG sing 292 n n C1 H11 PEG sing 293 n n C1 H12 PEG sing 294 n n O1 HO1 PEG sing 295 n n C2 O2 PEG sing 296 n n C2 H21 PEG sing 297 n n C2 H22 PEG sing 298 n n O2 C3 PEG sing 299 n n C3 C4 PEG sing 300 n n C3 H31 PEG sing 301 n n C3 H32 PEG sing 302 n n C4 O4 PEG sing 303 n n C4 H41 PEG sing 304 n n C4 H42 PEG sing 305 n n O4 HO4 PEG sing 306 n n # _atom_sites.entry_id 7PJ5 _atom_sites.fract_transf_matrix[1][1] 0.020974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1PE AAA 1 701 705 1PE 1PE . D 4 PEG AAA 1 702 706 PEG PEG . E 4 PEG AAA 1 703 707 PEG PEG . F 5 CA AAA 1 704 1 CA CA . G 6 HOH AAA 1 801 177 HOH HOH . G 6 HOH AAA 2 802 132 HOH HOH . G 6 HOH AAA 3 803 88 HOH HOH . G 6 HOH AAA 4 804 85 HOH HOH . G 6 HOH AAA 5 805 68 HOH HOH . G 6 HOH AAA 6 806 120 HOH HOH . G 6 HOH AAA 7 807 156 HOH HOH . G 6 HOH AAA 8 808 56 HOH HOH . G 6 HOH AAA 9 809 49 HOH HOH . G 6 HOH AAA 10 810 25 HOH HOH . G 6 HOH AAA 11 811 149 HOH HOH . G 6 HOH AAA 12 812 180 HOH HOH . G 6 HOH AAA 13 813 118 HOH HOH . G 6 HOH AAA 14 814 119 HOH HOH . G 6 HOH AAA 15 815 36 HOH HOH . G 6 HOH AAA 16 816 187 HOH HOH . G 6 HOH AAA 17 817 188 HOH HOH . G 6 HOH AAA 18 818 59 HOH HOH . G 6 HOH AAA 19 819 79 HOH HOH . G 6 HOH AAA 20 820 137 HOH HOH . G 6 HOH AAA 21 821 104 HOH HOH . G 6 HOH AAA 22 822 81 HOH HOH . G 6 HOH AAA 23 823 61 HOH HOH . G 6 HOH AAA 24 824 8 HOH HOH . G 6 HOH AAA 25 825 138 HOH HOH . G 6 HOH AAA 26 826 16 HOH HOH . G 6 HOH AAA 27 827 175 HOH HOH . G 6 HOH AAA 28 828 6 HOH HOH . G 6 HOH AAA 29 829 13 HOH HOH . G 6 HOH AAA 30 830 33 HOH HOH . G 6 HOH AAA 31 831 181 HOH HOH . G 6 HOH AAA 32 832 186 HOH HOH . G 6 HOH AAA 33 833 54 HOH HOH . G 6 HOH AAA 34 834 103 HOH HOH . G 6 HOH AAA 35 835 185 HOH HOH . G 6 HOH AAA 36 836 31 HOH HOH . G 6 HOH AAA 37 837 39 HOH HOH . G 6 HOH AAA 38 838 89 HOH HOH . G 6 HOH AAA 39 839 80 HOH HOH . G 6 HOH AAA 40 840 52 HOH HOH . G 6 HOH AAA 41 841 192 HOH HOH . G 6 HOH AAA 42 842 93 HOH HOH . G 6 HOH AAA 43 843 32 HOH HOH . G 6 HOH AAA 44 844 74 HOH HOH . G 6 HOH AAA 45 845 22 HOH HOH . G 6 HOH AAA 46 846 10 HOH HOH . G 6 HOH AAA 47 847 23 HOH HOH . G 6 HOH AAA 48 848 58 HOH HOH . G 6 HOH AAA 49 849 105 HOH HOH . G 6 HOH AAA 50 850 158 HOH HOH . G 6 HOH AAA 51 851 20 HOH HOH . G 6 HOH AAA 52 852 66 HOH HOH . G 6 HOH AAA 53 853 108 HOH HOH . G 6 HOH AAA 54 854 83 HOH HOH . G 6 HOH AAA 55 855 164 HOH HOH . G 6 HOH AAA 56 856 15 HOH HOH . G 6 HOH AAA 57 857 12 HOH HOH . G 6 HOH AAA 58 858 44 HOH HOH . G 6 HOH AAA 59 859 14 HOH HOH . G 6 HOH AAA 60 860 143 HOH HOH . G 6 HOH AAA 61 861 111 HOH HOH . G 6 HOH AAA 62 862 84 HOH HOH . G 6 HOH AAA 63 863 5 HOH HOH . G 6 HOH AAA 64 864 67 HOH HOH . G 6 HOH AAA 65 865 122 HOH HOH . G 6 HOH AAA 66 866 183 HOH HOH . G 6 HOH AAA 67 867 127 HOH HOH . G 6 HOH AAA 68 868 100 HOH HOH . G 6 HOH AAA 69 869 37 HOH HOH . G 6 HOH AAA 70 870 110 HOH HOH . G 6 HOH AAA 71 871 45 HOH HOH . G 6 HOH AAA 72 872 71 HOH HOH . G 6 HOH AAA 73 873 11 HOH HOH . G 6 HOH AAA 74 874 26 HOH HOH . G 6 HOH AAA 75 875 43 HOH HOH . G 6 HOH AAA 76 876 28 HOH HOH . G 6 HOH AAA 77 877 172 HOH HOH . G 6 HOH AAA 78 878 96 HOH HOH . G 6 HOH AAA 79 879 82 HOH HOH . G 6 HOH AAA 80 880 7 HOH HOH . G 6 HOH AAA 81 881 168 HOH HOH . G 6 HOH AAA 82 882 41 HOH HOH . G 6 HOH AAA 83 883 135 HOH HOH . G 6 HOH AAA 84 884 163 HOH HOH . G 6 HOH AAA 85 885 129 HOH HOH . G 6 HOH AAA 86 886 19 HOH HOH . G 6 HOH AAA 87 887 40 HOH HOH . G 6 HOH AAA 88 888 165 HOH HOH . G 6 HOH AAA 89 889 47 HOH HOH . G 6 HOH AAA 90 890 62 HOH HOH . G 6 HOH AAA 91 891 128 HOH HOH . G 6 HOH AAA 92 892 53 HOH HOH . G 6 HOH AAA 93 893 69 HOH HOH . G 6 HOH AAA 94 894 2 HOH HOH . G 6 HOH AAA 95 895 139 HOH HOH . G 6 HOH AAA 96 896 133 HOH HOH . G 6 HOH AAA 97 897 141 HOH HOH . G 6 HOH AAA 98 898 30 HOH HOH . G 6 HOH AAA 99 899 72 HOH HOH . G 6 HOH AAA 100 900 170 HOH HOH . G 6 HOH AAA 101 901 21 HOH HOH . G 6 HOH AAA 102 902 87 HOH HOH . G 6 HOH AAA 103 903 152 HOH HOH . G 6 HOH AAA 104 904 65 HOH HOH . G 6 HOH AAA 105 905 34 HOH HOH . G 6 HOH AAA 106 906 179 HOH HOH . G 6 HOH AAA 107 907 76 HOH HOH . G 6 HOH AAA 108 908 146 HOH HOH . G 6 HOH AAA 109 909 29 HOH HOH . G 6 HOH AAA 110 910 101 HOH HOH . G 6 HOH AAA 111 911 123 HOH HOH . G 6 HOH AAA 112 912 9 HOH HOH . G 6 HOH AAA 113 913 73 HOH HOH . G 6 HOH AAA 114 914 42 HOH HOH . G 6 HOH AAA 115 915 70 HOH HOH . G 6 HOH AAA 116 916 150 HOH HOH . G 6 HOH AAA 117 917 134 HOH HOH . G 6 HOH AAA 118 918 48 HOH HOH . G 6 HOH AAA 119 919 124 HOH HOH . G 6 HOH AAA 120 920 173 HOH HOH . G 6 HOH AAA 121 921 38 HOH HOH . G 6 HOH AAA 122 922 60 HOH HOH . G 6 HOH AAA 123 923 77 HOH HOH . G 6 HOH AAA 124 924 178 HOH HOH . G 6 HOH AAA 125 925 18 HOH HOH . G 6 HOH AAA 126 926 24 HOH HOH . G 6 HOH AAA 127 927 162 HOH HOH . G 6 HOH AAA 128 928 189 HOH HOH . G 6 HOH AAA 129 929 55 HOH HOH . G 6 HOH AAA 130 930 151 HOH HOH . G 6 HOH AAA 131 931 113 HOH HOH . G 6 HOH AAA 132 932 35 HOH HOH . G 6 HOH AAA 133 933 94 HOH HOH . G 6 HOH AAA 134 934 95 HOH HOH . G 6 HOH AAA 135 935 130 HOH HOH . G 6 HOH AAA 136 936 171 HOH HOH . G 6 HOH AAA 137 937 169 HOH HOH . G 6 HOH AAA 138 938 147 HOH HOH . G 6 HOH AAA 139 939 148 HOH HOH . G 6 HOH AAA 140 940 17 HOH HOH . G 6 HOH AAA 141 941 190 HOH HOH . G 6 HOH AAA 142 942 102 HOH HOH . G 6 HOH AAA 143 943 92 HOH HOH . G 6 HOH AAA 144 944 154 HOH HOH . G 6 HOH AAA 145 945 174 HOH HOH . G 6 HOH AAA 146 946 153 HOH HOH . G 6 HOH AAA 147 947 75 HOH HOH . G 6 HOH AAA 148 948 51 HOH HOH . G 6 HOH AAA 149 949 3 HOH HOH . G 6 HOH AAA 150 950 46 HOH HOH . G 6 HOH AAA 151 951 159 HOH HOH . G 6 HOH AAA 152 952 161 HOH HOH . G 6 HOH AAA 153 953 107 HOH HOH . G 6 HOH AAA 154 954 115 HOH HOH . G 6 HOH AAA 155 955 90 HOH HOH . G 6 HOH AAA 156 956 155 HOH HOH . G 6 HOH AAA 157 957 182 HOH HOH . G 6 HOH AAA 158 958 106 HOH HOH . G 6 HOH AAA 159 959 191 HOH HOH . G 6 HOH AAA 160 960 145 HOH HOH . G 6 HOH AAA 161 961 142 HOH HOH . G 6 HOH AAA 162 962 114 HOH HOH . G 6 HOH AAA 163 963 157 HOH HOH . G 6 HOH AAA 164 964 166 HOH HOH . G 6 HOH AAA 165 965 121 HOH HOH . G 6 HOH AAA 166 966 144 HOH HOH . G 6 HOH AAA 167 967 126 HOH HOH . G 6 HOH AAA 168 968 167 HOH HOH . G 6 HOH AAA 169 969 160 HOH HOH . G 6 HOH AAA 170 970 184 HOH HOH . G 6 HOH AAA 171 971 176 HOH HOH . G 6 HOH AAA 172 972 140 HOH HOH . G 6 HOH AAA 173 973 131 HOH HOH . G 6 HOH AAA 174 974 136 HOH HOH . G 6 HOH AAA 175 975 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 13.811 40.072 6.876 1 38.77 0 C1 PEG 702 AAA 1 HETATM 2 O O1 PEG . . . D 4 13.431 40.584 5.631 1 37.85 0 O1 PEG 702 AAA 1 HETATM 3 C C2 PEG . . . D 4 12.717 40.204 7.889 1 35.36 0 C2 PEG 702 AAA 1 HETATM 4 O O2 PEG . . . D 4 12.352 41.573 8.014 1 34.88 0 O2 PEG 702 AAA 1 HETATM 5 C C3 PEG . . . D 4 11.379 41.827 9.024 1 37.9 0 C3 PEG 702 AAA 1 HETATM 6 C C4 PEG . . . D 4 11.437 43.267 9.387 1 37.53 0 C4 PEG 702 AAA 1 HETATM 7 O O4 PEG . . . D 4 10.896 44.094 8.378 1 37.33 0 O4 PEG 702 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #