data_7PJG
#
_model_server_result.job_id            cKIfM8XVHLYPlswqqEGy8w 
_model_server_result.datetime_utc      '2024-11-30 08:52:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pjg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    7PJG 
#
_exptl.entry_id    7PJG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              490.594 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,4R)-N-[[4-(4-cyclopropylbuta-1,3-diynyl)phenyl]methyl]-1-(2-methylpropanoyl)-4-[[(2S,4R)-4-oxidanylpyrrolidin-2-yl]carbonylamino]pyrrolidine-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.89 
_cell.angle_gamma         90 
_cell.entry_id            7PJG 
_cell.length_a            35.62 
_cell.length_b            66.61 
_cell.length_c            62.97 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PJG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 91 A HIS 78 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc2 A NE2 HIS 250 A HIS 237 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc3 A OD1 ASP 254 A ASP 241 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 B ZN ZN . A ZN 501 1_555 C N3 7S2 . A 7S2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc5 B ZN ZN . A ZN 501 1_555 C O7 7S2 . A 7S2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
#
_chem_comp.formula           'C28 H34 N4 O4' 
_chem_comp.formula_weight    490.594 
_chem_comp.id                7S2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,4R)-N-[[4-(4-cyclopropylbuta-1,3-diynyl)phenyl]methyl]-1-(2-methylpropanoyl)-4-[[(2S,4R)-4-oxidanylpyrrolidin-2-yl]carbonylamino]pyrrolidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C2 7S2 sing 1 n n 
N3 C4 7S2 sing 2 n n 
C2 C1 7S2 sing 3 n n 
C2 C6 7S2 sing 4 n n 
C4 C5 7S2 sing 5 n n 
O7 C1 7S2 doub 6 n n 
C1 N8 7S2 sing 7 n n 
C6 C5 7S2 sing 8 n n 
N8 C9 7S2 sing 9 n n 
C5 O36 7S2 sing 10 n n 
C9 C13 7S2 sing 11 n n 
C9 C10 7S2 sing 12 n n 
C13 N12 7S2 sing 13 n n 
C10 C11 7S2 sing 14 n n 
N12 C11 7S2 sing 15 n n 
N12 C14 7S2 sing 16 n n 
O21 C19 7S2 doub 17 n n 
C11 C19 7S2 sing 18 n n 
C19 N20 7S2 sing 19 n n 
O15 C14 7S2 doub 20 n n 
C14 C16 7S2 sing 21 n n 
N20 C22 7S2 sing 22 n n 
C22 C23 7S2 sing 23 n n 
C24 C23 7S2 doub 24 n y 
C24 C25 7S2 sing 25 n y 
C23 C28 7S2 sing 26 n y 
C25 C26 7S2 doub 27 n y 
C16 C17 7S2 sing 28 n n 
C16 C18 7S2 sing 29 n n 
C28 C27 7S2 doub 30 n y 
C26 C27 7S2 sing 31 n y 
C26 C29 7S2 sing 32 n n 
C29 C30 7S2 trip 33 n n 
C30 C31 7S2 sing 34 n n 
C31 C32 7S2 trip 35 n n 
C32 C33 7S2 sing 36 n n 
C33 C35 7S2 sing 37 n n 
C33 C34 7S2 sing 38 n n 
C35 C34 7S2 sing 39 n n 
C2 H1 7S2 sing 40 n n 
C4 H2 7S2 sing 41 n n 
C4 H3 7S2 sing 42 n n 
C5 H4 7S2 sing 43 n n 
C6 H5 7S2 sing 44 n n 
C6 H6 7S2 sing 45 n n 
C10 H7 7S2 sing 46 n n 
C10 H8 7S2 sing 47 n n 
C11 H9 7S2 sing 48 n n 
C13 H10 7S2 sing 49 n n 
C13 H11 7S2 sing 50 n n 
C22 H12 7S2 sing 51 n n 
C22 H13 7S2 sing 52 n n 
C24 H14 7S2 sing 53 n n 
C25 H15 7S2 sing 54 n n 
C35 H16 7S2 sing 55 n n 
C35 H17 7S2 sing 56 n n 
N3 H18 7S2 sing 57 n n 
N8 H20 7S2 sing 58 n n 
C9 H21 7S2 sing 59 n n 
C16 H22 7S2 sing 60 n n 
C17 H23 7S2 sing 61 n n 
C17 H24 7S2 sing 62 n n 
C17 H25 7S2 sing 63 n n 
C18 H26 7S2 sing 64 n n 
C18 H27 7S2 sing 65 n n 
C18 H28 7S2 sing 66 n n 
N20 H29 7S2 sing 67 n n 
C27 H30 7S2 sing 68 n n 
C28 H31 7S2 sing 69 n n 
C33 H32 7S2 sing 70 n n 
C34 H33 7S2 sing 71 n n 
C34 H34 7S2 sing 72 n n 
O36 H35 7S2 sing 73 n n 
#
_atom_sites.entry_id                     7PJG 
_atom_sites.fract_transf_matrix[1][1]    0.028074 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000436 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 3 7S2 A 1 502 1 7S2 214 . 
D 4 HOH A 1 601 12 HOH HOH . 
D 4 HOH A 2 602 63 HOH HOH . 
D 4 HOH A 3 603 60 HOH HOH . 
D 4 HOH A 4 604 49 HOH HOH . 
D 4 HOH A 5 605 58 HOH HOH . 
D 4 HOH A 6 606 39 HOH HOH . 
D 4 HOH A 7 607 3 HOH HOH . 
D 4 HOH A 8 608 13 HOH HOH . 
D 4 HOH A 9 609 20 HOH HOH . 
D 4 HOH A 10 610 9 HOH HOH . 
D 4 HOH A 11 611 45 HOH HOH . 
D 4 HOH A 12 612 53 HOH HOH . 
D 4 HOH A 13 613 40 HOH HOH . 
D 4 HOH A 14 614 27 HOH HOH . 
D 4 HOH A 15 615 52 HOH HOH . 
D 4 HOH A 16 616 84 HOH HOH . 
D 4 HOH A 17 617 6 HOH HOH . 
D 4 HOH A 18 618 31 HOH HOH . 
D 4 HOH A 19 619 2 HOH HOH . 
D 4 HOH A 20 620 37 HOH HOH . 
D 4 HOH A 21 621 46 HOH HOH . 
D 4 HOH A 22 622 51 HOH HOH . 
D 4 HOH A 23 623 32 HOH HOH . 
D 4 HOH A 24 624 14 HOH HOH . 
D 4 HOH A 25 625 66 HOH HOH . 
D 4 HOH A 26 626 16 HOH HOH . 
D 4 HOH A 27 627 65 HOH HOH . 
D 4 HOH A 28 628 24 HOH HOH . 
D 4 HOH A 29 629 70 HOH HOH . 
D 4 HOH A 30 630 18 HOH HOH . 
D 4 HOH A 31 631 68 HOH HOH . 
D 4 HOH A 32 632 74 HOH HOH . 
D 4 HOH A 33 633 76 HOH HOH . 
D 4 HOH A 34 634 75 HOH HOH . 
D 4 HOH A 35 635 26 HOH HOH . 
D 4 HOH A 36 636 89 HOH HOH . 
D 4 HOH A 37 637 56 HOH HOH . 
D 4 HOH A 38 638 36 HOH HOH . 
D 4 HOH A 39 639 8 HOH HOH . 
D 4 HOH A 40 640 85 HOH HOH . 
D 4 HOH A 41 641 17 HOH HOH . 
D 4 HOH A 42 642 28 HOH HOH . 
D 4 HOH A 43 643 42 HOH HOH . 
D 4 HOH A 44 644 19 HOH HOH . 
D 4 HOH A 45 645 7 HOH HOH . 
D 4 HOH A 46 646 41 HOH HOH . 
D 4 HOH A 47 647 50 HOH HOH . 
D 4 HOH A 48 648 81 HOH HOH . 
D 4 HOH A 49 649 29 HOH HOH . 
D 4 HOH A 50 650 22 HOH HOH . 
D 4 HOH A 51 651 47 HOH HOH . 
D 4 HOH A 52 652 59 HOH HOH . 
D 4 HOH A 53 653 15 HOH HOH . 
D 4 HOH A 54 654 23 HOH HOH . 
D 4 HOH A 55 655 44 HOH HOH . 
D 4 HOH A 56 656 61 HOH HOH . 
D 4 HOH A 57 657 57 HOH HOH . 
D 4 HOH A 58 658 62 HOH HOH . 
D 4 HOH A 59 659 55 HOH HOH . 
D 4 HOH A 60 660 78 HOH HOH . 
D 4 HOH A 61 661 10 HOH HOH . 
D 4 HOH A 62 662 4 HOH HOH . 
D 4 HOH A 63 663 72 HOH HOH . 
D 4 HOH A 64 664 77 HOH HOH . 
D 4 HOH A 65 665 88 HOH HOH . 
D 4 HOH A 66 666 33 HOH HOH . 
D 4 HOH A 67 667 64 HOH HOH . 
D 4 HOH A 68 668 21 HOH HOH . 
D 4 HOH A 69 669 87 HOH HOH . 
D 4 HOH A 70 670 11 HOH HOH . 
D 4 HOH A 71 671 71 HOH HOH . 
D 4 HOH A 72 672 30 HOH HOH . 
D 4 HOH A 73 673 67 HOH HOH . 
D 4 HOH A 74 674 80 HOH HOH . 
D 4 HOH A 75 675 34 HOH HOH . 
D 4 HOH A 76 676 73 HOH HOH . 
D 4 HOH A 77 677 86 HOH HOH . 
D 4 HOH A 78 678 90 HOH HOH . 
D 4 HOH A 79 679 69 HOH HOH . 
D 4 HOH A 80 680 54 HOH HOH . 
D 4 HOH A 81 681 38 HOH HOH . 
D 4 HOH A 82 682 82 HOH HOH . 
D 4 HOH A 83 683 83 HOH HOH . 
D 4 HOH A 84 684 79 HOH HOH . 
D 4 HOH A 85 685 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 7S2 . . . C 3 -6.786 16.336 -9.592 1 34.67 ? C1 7S2 502 A 1 
HETATM 2 C C2 7S2 . . . C 3 -7.404 15.079 -10.138 1 35.6 ? C2 7S2 502 A 1 
HETATM 3 C C4 7S2 . . . C 3 -5.765 13.347 -10.101 1 37.03 ? C4 7S2 502 A 1 
HETATM 4 C C5 7S2 . . . C 3 -6.592 13.218 -8.824 1 39.8 ? C5 7S2 502 A 1 
HETATM 5 C C6 7S2 . . . C 3 -7.777 14.148 -8.997 1 36.97 ? C6 7S2 502 A 1 
HETATM 6 C C10 7S2 . . . C 3 -6.208 18.045 -7.191 1 31.54 ? C10 7S2 502 A 1 
HETATM 7 C C11 7S2 . . . C 3 -7.131 17.955 -5.985 1 35.33 ? C11 7S2 502 A 1 
HETATM 8 C C13 7S2 . . . C 3 -8.261 19.182 -7.749 1 32.55 ? C13 7S2 502 A 1 
HETATM 9 C C14 7S2 . . . C 3 -9.157 19.265 -5.436 1 39.26 ? C14 7S2 502 A 1 
HETATM 10 C C22 7S2 . . . C 3 -6.585 14.324 -5.057 1 36.87 ? C22 7S2 502 A 1 
HETATM 11 C C23 7S2 . . . C 3 -5.342 13.926 -4.282 1 38.38 ? C23 7S2 502 A 1 
HETATM 12 C C24 7S2 . . . C 3 -4.087 14.089 -4.857 1 35.28 ? C24 7S2 502 A 1 
HETATM 13 C C25 7S2 . . . C 3 -2.937 13.732 -4.154 1 36.97 ? C25 7S2 502 A 1 
HETATM 14 C C30 7S2 . . . C 3 -1.049 12.592 -1.522 1 46.33 ? C30 7S2 502 A 1 
HETATM 15 C C32 7S2 . . . C 3 0.753 11.997 0.218 1 50.8 ? C32 7S2 502 A 1 
HETATM 16 C C35 7S2 . . . C 3 2.716 12.333 1.826 1 54.91 ? C35 7S2 502 A 1 
HETATM 17 N N3 7S2 . . . C 3 -6.409 14.362 -10.956 1 34.59 ? N3 7S2 502 A 1 
HETATM 18 O O7 7S2 . . . C 3 -5.585 16.555 -9.713 1 31.13 ? O7 7S2 502 A 1 
HETATM 19 N N8 7S2 . . . C 3 -7.608 17.168 -8.961 1 33 ? N8 7S2 502 A 1 
HETATM 20 C C9 7S2 . . . C 3 -7.114 18.387 -8.354 1 31.42 ? C9 7S2 502 A 1 
HETATM 21 N N12 7S2 . . . C 3 -8.258 18.832 -6.329 1 34.03 ? N12 7S2 502 A 1 
HETATM 22 O O15 7S2 . . . C 3 -10.035 20.044 -5.758 1 38.55 ? O15 7S2 502 A 1 
HETATM 23 C C16 7S2 . . . C 3 -9.08 18.797 -4.003 1 38.41 ? C16 7S2 502 A 1 
HETATM 24 C C17 7S2 . . . C 3 -10.468 18.515 -3.441 1 38 ? C17 7S2 502 A 1 
HETATM 25 C C18 7S2 . . . C 3 -8.364 19.847 -3.165 1 38.16 ? C18 7S2 502 A 1 
HETATM 26 C C19 7S2 . . . C 3 -7.48 16.502 -5.8 1 35.28 ? C19 7S2 502 A 1 
HETATM 27 N N20 7S2 . . . C 3 -6.494 15.751 -5.316 1 38.67 ? N20 7S2 502 A 1 
HETATM 28 O O21 7S2 . . . C 3 -8.579 16.073 -6.084 1 39.55 ? O21 7S2 502 A 1 
HETATM 29 C C26 7S2 . . . C 3 -3.035 13.217 -2.87 1 35.8 ? C26 7S2 502 A 1 
HETATM 30 C C27 7S2 . . . C 3 -4.291 13.055 -2.287 1 35.9 ? C27 7S2 502 A 1 
HETATM 31 C C28 7S2 . . . C 3 -5.443 13.409 -2.988 1 36.29 ? C28 7S2 502 A 1 
HETATM 32 C C29 7S2 . . . C 3 -1.971 12.903 -2.216 1 42.32 ? C29 7S2 502 A 1 
HETATM 33 C C31 7S2 . . . C 3 -0.023 12.225 -0.672 1 47.58 ? C31 7S2 502 A 1 
HETATM 34 C C33 7S2 . . . C 3 1.598 11.443 1.296 1 57.39 ? C33 7S2 502 A 1 
HETATM 35 C C34 7S2 . . . C 3 1.452 12.129 2.654 1 54.57 ? C34 7S2 502 A 1 
HETATM 36 O O36 7S2 . . . C 3 -7.035 11.873 -8.644 1 45.17 ? O36 7S2 502 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           36 
#