data_7PJN
#
_model_server_result.job_id            P5EJOFydKd-pLVy3OLYphg 
_model_server_result.datetime_utc      '2024-11-28 17:19:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pjn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    7PJN 
#
_exptl.entry_id    7PJN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PJN 
_cell.length_a            80.18 
_cell.length_b            153.05 
_cell.length_c            164.01 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PJN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,X 1 1 
D,T,U,V,W,AA 1 2 
B,C,J,K,L,M,N,O,P,Q,R,S,Y,Z 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -164.01 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 L N N 
? 4 Q N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 132 A CYS 132 1_555 A SG CYS 269 A CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 132 B CYS 132 1_555 B SG CYS 269 B CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 132 C CYS 132 1_555 C SG CYS 269 C CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 D SG CYS 132 D CYS 132 1_555 D SG CYS 269 D CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B C ALA 378 B ALA 378 1_555 B N CSD 379 B CSD 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C CSD 379 B CSD 379 1_555 B N ILE 380 B ILE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 126 n n 
C1 O2 CIT sing 127 n n 
C1 C2 CIT sing 128 n n 
O2 HO2 CIT sing 129 n n 
C2 C3 CIT sing 130 n n 
C2 H21 CIT sing 131 n n 
C2 H22 CIT sing 132 n n 
C3 O7 CIT sing 133 n n 
C3 C4 CIT sing 134 n n 
C3 C6 CIT sing 135 n n 
O7 HO7 CIT sing 136 n n 
C4 C5 CIT sing 137 n n 
C4 H41 CIT sing 138 n n 
C4 H42 CIT sing 139 n n 
C5 O3 CIT doub 140 n n 
C5 O4 CIT sing 141 n n 
O4 HO4 CIT sing 142 n n 
C6 O5 CIT doub 143 n n 
C6 O6 CIT sing 144 n n 
O6 HO6 CIT sing 145 n n 
#
_atom_sites.entry_id                     7PJN 
_atom_sites.fract_transf_matrix[1][1]    0.012472 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006534 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006097 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 7SU A 1 601 601 7SU DS1 . 
F 4 CIT A 1 602 701 CIT CIT . 
G 5 GOL A 1 603 801 GOL GOL . 
H 6 NDP A 1 604 901 NDP NPH . 
I 4 CIT A 1 605 1 CIT CIT . 
J 3 7SU B 1 601 601 7SU DS1 . 
K 5 GOL B 1 602 801 GOL GOL . 
L 4 CIT B 1 603 901 CIT CIT . 
M 6 NDP B 1 604 1001 NDP NPH . 
N 5 GOL B 1 605 1101 GOL GOL . 
O 3 7SU C 1 601 601 7SU DS1 . 
P 5 GOL C 1 602 801 GOL GOL . 
Q 4 CIT C 1 603 901 CIT CIT . 
R 5 GOL C 1 604 1101 GOL GOL . 
S 6 NDP C 1 605 1201 NDP NPH . 
T 3 7SU D 1 601 601 7SU DS1 . 
U 5 GOL D 1 602 701 GOL GOL . 
V 4 CIT D 1 603 901 CIT CIT . 
W 6 NDP D 1 604 1001 NDP NPH . 
X 7 HOH A 1 701 11 HOH HOH . 
X 7 HOH A 2 702 4 HOH HOH . 
X 7 HOH A 3 703 105 HOH HOH . 
X 7 HOH A 4 704 35 HOH HOH . 
X 7 HOH A 5 705 119 HOH HOH . 
X 7 HOH A 6 706 46 HOH HOH . 
X 7 HOH A 7 707 66 HOH HOH . 
X 7 HOH A 8 708 32 HOH HOH . 
X 7 HOH A 9 709 50 HOH HOH . 
X 7 HOH A 10 710 70 HOH HOH . 
X 7 HOH A 11 711 21 HOH HOH . 
X 7 HOH A 12 712 110 HOH HOH . 
X 7 HOH A 13 713 8 HOH HOH . 
X 7 HOH A 14 714 72 HOH HOH . 
X 7 HOH A 15 715 39 HOH HOH . 
X 7 HOH A 16 716 36 HOH HOH . 
X 7 HOH A 17 717 87 HOH HOH . 
X 7 HOH A 18 718 86 HOH HOH . 
X 7 HOH A 19 719 102 HOH HOH . 
X 7 HOH A 20 720 10 HOH HOH . 
X 7 HOH A 21 721 2 HOH HOH . 
X 7 HOH A 22 722 54 HOH HOH . 
X 7 HOH A 23 723 25 HOH HOH . 
X 7 HOH A 24 724 20 HOH HOH . 
X 7 HOH A 25 725 75 HOH HOH . 
X 7 HOH A 26 726 9 HOH HOH . 
X 7 HOH A 27 727 85 HOH HOH . 
X 7 HOH A 28 728 67 HOH HOH . 
X 7 HOH A 29 729 131 HOH HOH . 
X 7 HOH A 30 730 112 HOH HOH . 
X 7 HOH A 31 731 29 HOH HOH . 
X 7 HOH A 32 732 76 HOH HOH . 
X 7 HOH A 33 733 138 HOH HOH . 
X 7 HOH A 34 734 139 HOH HOH . 
X 7 HOH A 35 735 98 HOH HOH . 
X 7 HOH A 36 736 130 HOH HOH . 
X 7 HOH A 37 737 74 HOH HOH . 
X 7 HOH A 38 738 140 HOH HOH . 
X 7 HOH A 39 739 100 HOH HOH . 
Y 7 HOH B 1 701 129 HOH HOH . 
Y 7 HOH B 2 702 122 HOH HOH . 
Y 7 HOH B 3 703 42 HOH HOH . 
Y 7 HOH B 4 704 12 HOH HOH . 
Y 7 HOH B 5 705 83 HOH HOH . 
Y 7 HOH B 6 706 95 HOH HOH . 
Y 7 HOH B 7 707 6 HOH HOH . 
Y 7 HOH B 8 708 53 HOH HOH . 
Y 7 HOH B 9 709 57 HOH HOH . 
Y 7 HOH B 10 710 59 HOH HOH . 
Y 7 HOH B 11 711 88 HOH HOH . 
Y 7 HOH B 12 712 41 HOH HOH . 
Y 7 HOH B 13 713 51 HOH HOH . 
Y 7 HOH B 14 714 55 HOH HOH . 
Y 7 HOH B 15 715 101 HOH HOH . 
Y 7 HOH B 16 716 124 HOH HOH . 
Y 7 HOH B 17 717 1 HOH HOH . 
Y 7 HOH B 18 718 89 HOH HOH . 
Y 7 HOH B 19 719 27 HOH HOH . 
Y 7 HOH B 20 720 5 HOH HOH . 
Y 7 HOH B 21 721 106 HOH HOH . 
Y 7 HOH B 22 722 24 HOH HOH . 
Y 7 HOH B 23 723 123 HOH HOH . 
Y 7 HOH B 24 724 19 HOH HOH . 
Y 7 HOH B 25 725 17 HOH HOH . 
Y 7 HOH B 26 726 137 HOH HOH . 
Y 7 HOH B 27 727 142 HOH HOH . 
Y 7 HOH B 28 728 38 HOH HOH . 
Y 7 HOH B 29 729 37 HOH HOH . 
Y 7 HOH B 30 730 13 HOH HOH . 
Y 7 HOH B 31 731 52 HOH HOH . 
Y 7 HOH B 32 732 18 HOH HOH . 
Y 7 HOH B 33 733 77 HOH HOH . 
Y 7 HOH B 34 734 113 HOH HOH . 
Y 7 HOH B 35 735 45 HOH HOH . 
Y 7 HOH B 36 736 14 HOH HOH . 
Y 7 HOH B 37 737 16 HOH HOH . 
Y 7 HOH B 38 738 81 HOH HOH . 
Y 7 HOH B 39 739 133 HOH HOH . 
Y 7 HOH B 40 740 121 HOH HOH . 
Y 7 HOH B 41 741 125 HOH HOH . 
Y 7 HOH B 42 742 143 HOH HOH . 
Y 7 HOH B 43 743 82 HOH HOH . 
Z 7 HOH C 1 701 56 HOH HOH . 
Z 7 HOH C 2 702 126 HOH HOH . 
Z 7 HOH C 3 703 7 HOH HOH . 
Z 7 HOH C 4 704 58 HOH HOH . 
Z 7 HOH C 5 705 91 HOH HOH . 
Z 7 HOH C 6 706 3 HOH HOH . 
Z 7 HOH C 7 707 99 HOH HOH . 
Z 7 HOH C 8 708 47 HOH HOH . 
Z 7 HOH C 9 709 93 HOH HOH . 
Z 7 HOH C 10 710 71 HOH HOH . 
Z 7 HOH C 11 711 15 HOH HOH . 
Z 7 HOH C 12 712 40 HOH HOH . 
Z 7 HOH C 13 713 22 HOH HOH . 
Z 7 HOH C 14 714 120 HOH HOH . 
Z 7 HOH C 15 715 136 HOH HOH . 
Z 7 HOH C 16 716 79 HOH HOH . 
Z 7 HOH C 17 717 135 HOH HOH . 
Z 7 HOH C 18 718 141 HOH HOH . 
Z 7 HOH C 19 719 134 HOH HOH . 
AA 7 HOH D 1 701 117 HOH HOH . 
AA 7 HOH D 2 702 118 HOH HOH . 
AA 7 HOH D 3 703 44 HOH HOH . 
AA 7 HOH D 4 704 43 HOH HOH . 
AA 7 HOH D 5 705 84 HOH HOH . 
AA 7 HOH D 6 706 127 HOH HOH . 
AA 7 HOH D 7 707 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . F 4 42.451 -16.094 -26.557 1 100.85 ? C1 CIT 602 A 1 
HETATM 2 O O1 CIT . . . F 4 41.243 -15.784 -26.724 1 92.11 ? O1 CIT 602 A 1 
HETATM 3 O O2 CIT . . . F 4 42.824 -16.51 -25.431 1 86.44 ? O2 CIT 602 A 1 
HETATM 4 C C2 CIT . . . F 4 43.45 -15.965 -27.691 1 83.01 ? C2 CIT 602 A 1 
HETATM 5 C C3 CIT . . . F 4 44.852 -16.364 -27.214 1 89.11 ? C3 CIT 602 A 1 
HETATM 6 O O7 CIT . . . F 4 44.813 -16.649 -25.787 1 82.73 ? O7 CIT 602 A 1 
HETATM 7 C C4 CIT . . . F 4 45.365 -17.583 -27.986 1 93.46 ? C4 CIT 602 A 1 
HETATM 8 C C5 CIT . . . F 4 44.922 -18.88 -27.34 1 105.29 ? C5 CIT 602 A 1 
HETATM 9 O O3 CIT . . . F 4 45.724 -19.84 -27.237 1 94.98 ? O3 CIT 602 A 1 
HETATM 10 O O4 CIT . . . F 4 43.757 -19.009 -26.895 1 104.57 ? O4 CIT 602 A 1 
HETATM 11 C C6 CIT . . . F 4 45.827 -15.215 -27.444 1 89.53 ? C6 CIT 602 A 1 
HETATM 12 O O5 CIT . . . F 4 45.396 -14.05 -27.558 1 97.95 ? O5 CIT 602 A 1 
HETATM 13 O O6 CIT . . . F 4 47.068 -15.402 -27.499 1 83.52 ? O6 CIT 602 A 1 
HETATM 14 H H21 CIT . . . F 4 43.464 -14.937 -28.051 1 99.61 ? H21 CIT 602 A 1 
HETATM 15 H H22 CIT . . . F 4 43.148 -16.607 -28.519 1 99.61 ? H22 CIT 602 A 1 
HETATM 16 H HO7 CIT . . . F 4 45.422 -16.043 -25.316 1 99.27 ? HO7 CIT 602 A 1 
HETATM 17 H H41 CIT . . . F 4 46.454 -17.552 -28.023 1 112.15 ? H41 CIT 602 A 1 
HETATM 18 H H42 CIT . . . F 4 44.993 -17.544 -29.009 1 112.15 ? H42 CIT 602 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#