data_7PJR # _model_server_result.job_id eWF05a2GT1SJTlvlASmhJA _model_server_result.datetime_utc '2024-11-28 21:20:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pjr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7PJR # _exptl.entry_id 7PJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PJR _cell.length_a 60.49 _cell.length_b 72.25 _cell.length_c 78.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 106 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf2 A SG CYS 53 A CYS 53 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 229 A CYS 229 1_555 A SG CYS 241 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf4 A SG CYS 309 A CYS 309 1_555 A SG CYS 372 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 336 A CYS 336 1_555 A SG CYS 355 A CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf6 A SG CYS 363 A CYS 363 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? covale ? covale1 A ND2 ASN 19 A ASN 19 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 268 n n C1 O1 NAG sing 269 n n C1 O5 NAG sing 270 n n C1 H1 NAG sing 271 n n C2 C3 NAG sing 272 n n C2 N2 NAG sing 273 n n C2 H2 NAG sing 274 n n C3 C4 NAG sing 275 n n C3 O3 NAG sing 276 n n C3 H3 NAG sing 277 n n C4 C5 NAG sing 278 n n C4 O4 NAG sing 279 n n C4 H4 NAG sing 280 n n C5 C6 NAG sing 281 n n C5 O5 NAG sing 282 n n C5 H5 NAG sing 283 n n C6 O6 NAG sing 284 n n C6 H61 NAG sing 285 n n C6 H62 NAG sing 286 n n C7 C8 NAG sing 287 n n C7 N2 NAG sing 288 n n C7 O7 NAG doub 289 n n C8 H81 NAG sing 290 n n C8 H82 NAG sing 291 n n C8 H83 NAG sing 292 n n N2 HN2 NAG sing 293 n n O1 HO1 NAG sing 294 n n O3 HO3 NAG sing 295 n n O4 HO4 NAG sing 296 n n O6 HO6 NAG sing 297 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7PJR _atom_sites.fract_transf_matrix[1][1] 0.016532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 401 NAG NAG . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 601 DMS DMS . E 4 7SQ A 1 404 1 7SQ 438 . F 5 SO4 A 1 405 1 SO4 SO4 . G 5 SO4 A 1 406 2 SO4 SO4 . H 5 SO4 A 1 407 3 SO4 SO4 . I 5 SO4 A 1 408 4 SO4 SO4 . J 6 HOH A 1 501 179 HOH HOH . J 6 HOH A 2 502 66 HOH HOH . J 6 HOH A 3 503 8 HOH HOH . J 6 HOH A 4 504 178 HOH HOH . J 6 HOH A 5 505 26 HOH HOH . J 6 HOH A 6 506 32 HOH HOH . J 6 HOH A 7 507 12 HOH HOH . J 6 HOH A 8 508 18 HOH HOH . J 6 HOH A 9 509 15 HOH HOH . J 6 HOH A 10 510 48 HOH HOH . J 6 HOH A 11 511 36 HOH HOH . J 6 HOH A 12 512 50 HOH HOH . J 6 HOH A 13 513 52 HOH HOH . J 6 HOH A 14 514 55 HOH HOH . J 6 HOH A 15 515 25 HOH HOH . J 6 HOH A 16 516 9 HOH HOH . J 6 HOH A 17 517 38 HOH HOH . J 6 HOH A 18 518 4 HOH HOH . J 6 HOH A 19 519 47 HOH HOH . J 6 HOH A 20 520 34 HOH HOH . J 6 HOH A 21 521 23 HOH HOH . J 6 HOH A 22 522 76 HOH HOH . J 6 HOH A 23 523 184 HOH HOH . J 6 HOH A 24 524 67 HOH HOH . J 6 HOH A 25 525 181 HOH HOH . J 6 HOH A 26 526 77 HOH HOH . J 6 HOH A 27 527 5 HOH HOH . J 6 HOH A 28 528 14 HOH HOH . J 6 HOH A 29 529 68 HOH HOH . J 6 HOH A 30 530 86 HOH HOH . J 6 HOH A 31 531 11 HOH HOH . J 6 HOH A 32 532 78 HOH HOH . J 6 HOH A 33 533 65 HOH HOH . J 6 HOH A 34 534 45 HOH HOH . J 6 HOH A 35 535 57 HOH HOH . J 6 HOH A 36 536 10 HOH HOH . J 6 HOH A 37 537 2 HOH HOH . J 6 HOH A 38 538 69 HOH HOH . J 6 HOH A 39 539 182 HOH HOH . J 6 HOH A 40 540 13 HOH HOH . J 6 HOH A 41 541 72 HOH HOH . J 6 HOH A 42 542 27 HOH HOH . J 6 HOH A 43 543 53 HOH HOH . J 6 HOH A 44 544 29 HOH HOH . J 6 HOH A 45 545 35 HOH HOH . J 6 HOH A 46 546 22 HOH HOH . J 6 HOH A 47 547 20 HOH HOH . J 6 HOH A 48 548 183 HOH HOH . J 6 HOH A 49 549 16 HOH HOH . J 6 HOH A 50 550 54 HOH HOH . J 6 HOH A 51 551 91 HOH HOH . J 6 HOH A 52 552 6 HOH HOH . J 6 HOH A 53 553 73 HOH HOH . J 6 HOH A 54 554 81 HOH HOH . J 6 HOH A 55 555 70 HOH HOH . J 6 HOH A 56 556 3 HOH HOH . J 6 HOH A 57 557 17 HOH HOH . J 6 HOH A 58 558 174 HOH HOH . J 6 HOH A 59 559 180 HOH HOH . J 6 HOH A 60 560 7 HOH HOH . J 6 HOH A 61 561 172 HOH HOH . J 6 HOH A 62 562 83 HOH HOH . J 6 HOH A 63 563 21 HOH HOH . J 6 HOH A 64 564 80 HOH HOH . J 6 HOH A 65 565 71 HOH HOH . J 6 HOH A 66 566 44 HOH HOH . J 6 HOH A 67 567 59 HOH HOH . J 6 HOH A 68 568 19 HOH HOH . J 6 HOH A 69 569 37 HOH HOH . J 6 HOH A 70 570 177 HOH HOH . J 6 HOH A 71 571 93 HOH HOH . J 6 HOH A 72 572 39 HOH HOH . J 6 HOH A 73 573 31 HOH HOH . J 6 HOH A 74 574 84 HOH HOH . J 6 HOH A 75 575 51 HOH HOH . J 6 HOH A 76 576 79 HOH HOH . J 6 HOH A 77 577 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 4.222 -21.079 -0.708 1 37.46 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . B 2 5.361 -21.685 -1.593 1 50.59 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . B 2 6.785 -21.106 -1.304 1 43.12 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . B 2 6.789 -19.677 -0.77 1 41.75 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . B 2 5.675 -19.49 0.242 1 41.32 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . B 2 5.615 -18.125 0.899 1 49.55 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . B 2 4.507 -23.964 -1.886 1 54.08 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . B 2 4.649 -25.37 -1.399 1 56.65 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . B 2 5.361 -23.108 -1.344 1 57.01 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . B 2 7.536 -21.16 -2.519 1 51.18 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . B 2 8.047 -19.434 -0.148 1 50.6 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . B 2 4.457 -19.675 -0.475 1 40.98 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . B 2 5.491 -17.078 -0.054 1 57.33 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . B 2 3.709 -23.637 -2.774 1 64.77 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #