data_7PK0 # _model_server_result.job_id 7Y7sgBCU1lmXyDLzWmLBAg _model_server_result.datetime_utc '2024-10-12 19:21:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pk0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7PK0 # _exptl.entry_id 7PK0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 871.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzoyl coenzyme A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PK0 _cell.length_a 63.84 _cell.length_b 63.84 _cell.length_c 135.336 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H40 N7 O17 P3 S' _chem_comp.formula_weight 871.64 _chem_comp.id BYC _chem_comp.mon_nstd_flag . _chem_comp.name 'benzoyl coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6A N1A BYC doub 76 n y N1A C2A BYC sing 77 n y O1A P1A BYC doub 78 n n O2A P1A BYC sing 79 n n P1A O3A BYC sing 80 n n P1A O5D BYC sing 81 n n S1P C1B BYC sing 82 n n C1B O57 BYC doub 83 n n C1B C2B BYC sing 84 n n C2D C1D BYC sing 85 n n O4D C1D BYC sing 86 n n C1D N9A BYC sing 87 n n C1D H1D BYC sing 88 n n C2P S1P BYC sing 89 n n N3A C2A BYC doub 90 n y C2A H2A BYC sing 91 n n O2A HO2A BYC sing 92 n n O5A P2A BYC doub 93 n n P2A O6A BYC sing 94 n n P2A O4A BYC sing 95 n n P2A O3A BYC sing 96 n n C3B C2B BYC doub 97 n y C2B C7B BYC sing 98 n y C3D C2D BYC sing 99 n n C2D O2D BYC sing 100 n n C2D H2D BYC sing 101 n n O2D HO2D BYC sing 102 n n C3P C2P BYC sing 103 n n C2P H2P BYC sing 104 n n C2P H2PA BYC sing 105 n n C4A N3A BYC sing 106 n y C3B C4B BYC sing 107 n y C3B H3B BYC sing 108 n n C3D C4D BYC sing 109 n n C3D O3D BYC sing 110 n n C3D H3D BYC sing 111 n n P3D O3D BYC sing 112 n n O8A P3D BYC doub 113 n n P3D O9A BYC sing 114 n n P3D O7A BYC sing 115 n n N4P C3P BYC sing 116 n n C3P H3P BYC sing 117 n n C3P H3PA BYC sing 118 n n N9A C4A BYC sing 119 n y C5M C4A BYC doub 120 n y O4A HO4A BYC sing 121 n n C4B C5B BYC doub 122 n y C4B H4B BYC sing 123 n n C5D C4D BYC sing 124 n n C4D O4D BYC sing 125 n n C4D H4D BYC sing 126 n n C5P N4P BYC sing 127 n n N4P HN4P BYC sing 128 n n C5B C6B BYC sing 129 n y C5B H5B BYC sing 130 n n O5D C5D BYC sing 131 n n C5D H5D BYC sing 132 n n C5D H5DA BYC sing 133 n n N7A C5M BYC sing 134 n y C5M C6A BYC sing 135 n y C6P C5P BYC sing 136 n n C5P O5P BYC doub 137 n n N6A C6A BYC sing 138 n n N6A HN6A BYC sing 139 n n N6A HN6B BYC sing 140 n n O6A CCP BYC sing 141 n n C7B C6B BYC doub 142 n y C6B H6B BYC sing 143 n n C7P C6P BYC sing 144 n n C6P H6P BYC sing 145 n n C6P H6PA BYC sing 146 n n C8A N7A BYC doub 147 n y O7A HO7A BYC sing 148 n n C7B H7B BYC sing 149 n n N8P C7P BYC sing 150 n n C7P H7P BYC sing 151 n n C7P H7PA BYC sing 152 n n C8A N9A BYC sing 153 n y C8A H8A BYC sing 154 n n C9P N8P BYC sing 155 n n N8P HN8P BYC sing 156 n n O9A HO9A BYC sing 157 n n O9P C9P BYC doub 158 n n CAP C9P BYC sing 159 n n CAP CBP BYC sing 160 n n CAP OAP BYC sing 161 n n CAP HAP BYC sing 162 n n OAP HOAP BYC sing 163 n n CEP CBP BYC sing 164 n n CCP CBP BYC sing 165 n n CBP CDP BYC sing 166 n n CCP HCP BYC sing 167 n n CCP HCPA BYC sing 168 n n CDP HDP BYC sing 169 n n CDP HDPA BYC sing 170 n n CDP HDPB BYC sing 171 n n CEP HEP BYC sing 172 n n CEP HEPA BYC sing 173 n n CEP HEPB BYC sing 174 n n # _atom_sites.entry_id 7PK0 _atom_sites.fract_transf_matrix[1][1] 0.015664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 401 ACT ACT . C 3 BYC A 1 402 501 BYC BYC . D 4 HOH A 1 501 95 HOH HOH . D 4 HOH A 2 502 82 HOH HOH . D 4 HOH A 3 503 64 HOH HOH . D 4 HOH A 4 504 83 HOH HOH . D 4 HOH A 5 505 123 HOH HOH . D 4 HOH A 6 506 13 HOH HOH . D 4 HOH A 7 507 57 HOH HOH . D 4 HOH A 8 508 67 HOH HOH . D 4 HOH A 9 509 53 HOH HOH . D 4 HOH A 10 510 47 HOH HOH . D 4 HOH A 11 511 78 HOH HOH . D 4 HOH A 12 512 121 HOH HOH . D 4 HOH A 13 513 45 HOH HOH . D 4 HOH A 14 514 62 HOH HOH . D 4 HOH A 15 515 54 HOH HOH . D 4 HOH A 16 516 31 HOH HOH . D 4 HOH A 17 517 5 HOH HOH . D 4 HOH A 18 518 33 HOH HOH . D 4 HOH A 19 519 17 HOH HOH . D 4 HOH A 20 520 35 HOH HOH . D 4 HOH A 21 521 63 HOH HOH . D 4 HOH A 22 522 25 HOH HOH . D 4 HOH A 23 523 75 HOH HOH . D 4 HOH A 24 524 36 HOH HOH . D 4 HOH A 25 525 39 HOH HOH . D 4 HOH A 26 526 46 HOH HOH . D 4 HOH A 27 527 9 HOH HOH . D 4 HOH A 28 528 41 HOH HOH . D 4 HOH A 29 529 85 HOH HOH . D 4 HOH A 30 530 51 HOH HOH . D 4 HOH A 31 531 38 HOH HOH . D 4 HOH A 32 532 60 HOH HOH . D 4 HOH A 33 533 77 HOH HOH . D 4 HOH A 34 534 1 HOH HOH . D 4 HOH A 35 535 112 HOH HOH . D 4 HOH A 36 536 116 HOH HOH . D 4 HOH A 37 537 108 HOH HOH . D 4 HOH A 38 538 127 HOH HOH . D 4 HOH A 39 539 119 HOH HOH . D 4 HOH A 40 540 2 HOH HOH . D 4 HOH A 41 541 105 HOH HOH . D 4 HOH A 42 542 91 HOH HOH . D 4 HOH A 43 543 132 HOH HOH . D 4 HOH A 44 544 97 HOH HOH . D 4 HOH A 45 545 113 HOH HOH . D 4 HOH A 46 546 42 HOH HOH . D 4 HOH A 47 547 20 HOH HOH . D 4 HOH A 48 548 103 HOH HOH . D 4 HOH A 49 549 4 HOH HOH . D 4 HOH A 50 550 16 HOH HOH . D 4 HOH A 51 551 12 HOH HOH . D 4 HOH A 52 552 58 HOH HOH . D 4 HOH A 53 553 99 HOH HOH . D 4 HOH A 54 554 98 HOH HOH . D 4 HOH A 55 555 29 HOH HOH . D 4 HOH A 56 556 55 HOH HOH . D 4 HOH A 57 557 10 HOH HOH . D 4 HOH A 58 558 115 HOH HOH . D 4 HOH A 59 559 50 HOH HOH . D 4 HOH A 60 560 30 HOH HOH . D 4 HOH A 61 561 56 HOH HOH . D 4 HOH A 62 562 18 HOH HOH . D 4 HOH A 63 563 125 HOH HOH . D 4 HOH A 64 564 79 HOH HOH . D 4 HOH A 65 565 94 HOH HOH . D 4 HOH A 66 566 76 HOH HOH . D 4 HOH A 67 567 19 HOH HOH . D 4 HOH A 68 568 110 HOH HOH . D 4 HOH A 69 569 68 HOH HOH . D 4 HOH A 70 570 73 HOH HOH . D 4 HOH A 71 571 124 HOH HOH . D 4 HOH A 72 572 44 HOH HOH . D 4 HOH A 73 573 72 HOH HOH . D 4 HOH A 74 574 6 HOH HOH . D 4 HOH A 75 575 37 HOH HOH . D 4 HOH A 76 576 122 HOH HOH . D 4 HOH A 77 577 87 HOH HOH . D 4 HOH A 78 578 23 HOH HOH . D 4 HOH A 79 579 120 HOH HOH . D 4 HOH A 80 580 92 HOH HOH . D 4 HOH A 81 581 14 HOH HOH . D 4 HOH A 82 582 101 HOH HOH . D 4 HOH A 83 583 7 HOH HOH . D 4 HOH A 84 584 22 HOH HOH . D 4 HOH A 85 585 93 HOH HOH . D 4 HOH A 86 586 61 HOH HOH . D 4 HOH A 87 587 106 HOH HOH . D 4 HOH A 88 588 15 HOH HOH . D 4 HOH A 89 589 88 HOH HOH . D 4 HOH A 90 590 102 HOH HOH . D 4 HOH A 91 591 66 HOH HOH . D 4 HOH A 92 592 8 HOH HOH . D 4 HOH A 93 593 27 HOH HOH . D 4 HOH A 94 594 40 HOH HOH . D 4 HOH A 95 595 104 HOH HOH . D 4 HOH A 96 596 84 HOH HOH . D 4 HOH A 97 597 43 HOH HOH . D 4 HOH A 98 598 96 HOH HOH . D 4 HOH A 99 599 100 HOH HOH . D 4 HOH A 100 600 126 HOH HOH . D 4 HOH A 101 601 49 HOH HOH . D 4 HOH A 102 602 28 HOH HOH . D 4 HOH A 103 603 32 HOH HOH . D 4 HOH A 104 604 89 HOH HOH . D 4 HOH A 105 605 109 HOH HOH . D 4 HOH A 106 606 3 HOH HOH . D 4 HOH A 107 607 59 HOH HOH . D 4 HOH A 108 608 111 HOH HOH . D 4 HOH A 109 609 24 HOH HOH . D 4 HOH A 110 610 48 HOH HOH . D 4 HOH A 111 611 11 HOH HOH . D 4 HOH A 112 612 114 HOH HOH . D 4 HOH A 113 613 90 HOH HOH . D 4 HOH A 114 614 21 HOH HOH . D 4 HOH A 115 615 74 HOH HOH . D 4 HOH A 116 616 34 HOH HOH . D 4 HOH A 117 617 107 HOH HOH . D 4 HOH A 118 618 81 HOH HOH . D 4 HOH A 119 619 71 HOH HOH . D 4 HOH A 120 620 69 HOH HOH . D 4 HOH A 121 621 118 HOH HOH . D 4 HOH A 122 622 131 HOH HOH . D 4 HOH A 123 623 80 HOH HOH . D 4 HOH A 124 624 86 HOH HOH . D 4 HOH A 125 625 129 HOH HOH . D 4 HOH A 126 626 26 HOH HOH . D 4 HOH A 127 627 130 HOH HOH . D 4 HOH A 128 628 128 HOH HOH . D 4 HOH A 129 629 117 HOH HOH . D 4 HOH A 130 630 52 HOH HOH . D 4 HOH A 131 631 65 HOH HOH . D 4 HOH A 132 632 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A BYC . . . C 3 -22.975 33.852 -22.28 1 40.6 ? N1A BYC 402 A 1 HETATM 2 O O1A BYC . . . C 3 -23.535 24.35 -18.944 1 27.26 ? O1A BYC 402 A 1 HETATM 3 P P1A BYC . . . C 3 -23.33 25.473 -19.915 1 27.56 ? P1A BYC 402 A 1 HETATM 4 C C1B BYC . . . C 3 -13.516 25.124 -14.1 1 30.71 ? C1B BYC 402 A 1 HETATM 5 C C1D BYC . . . C 3 -24.579 30.137 -19.114 1 28.88 ? C1D BYC 402 A 1 HETATM 6 S S1P BYC . . . C 3 -13.615 26.872 -14.44 1 29.22 ? S1P BYC 402 A 1 HETATM 7 C C2A BYC . . . C 3 -23.815 33.875 -21.234 1 39.77 ? C2A BYC 402 A 1 HETATM 8 O O2A BYC . . . C 3 -24.023 25.418 -21.245 1 26.63 ? O2A BYC 402 A 1 HETATM 9 P P2A BYC . . . C 3 -20.871 25.342 -21.415 1 27.09 ? P2A BYC 402 A 1 HETATM 10 C C2B BYC . . . C 3 -14.43 24.58 -13.071 1 28.84 ? C2B BYC 402 A 1 HETATM 11 C C2D BYC . . . C 3 -25.707 29.142 -19.349 1 32.7 ? C2D BYC 402 A 1 HETATM 12 O O2D BYC . . . C 3 -26.894 29.797 -19.75 1 34.22 ? O2D BYC 402 A 1 HETATM 13 C C2P BYC . . . C 3 -12.884 26.971 -16.089 1 28.6 ? C2P BYC 402 A 1 HETATM 14 N N3A BYC . . . C 3 -24.227 32.869 -20.459 1 35.94 ? N3A BYC 402 A 1 HETATM 15 O O3A BYC . . . C 3 -21.793 25.808 -20.185 1 27.63 ? O3A BYC 402 A 1 HETATM 16 C C3B BYC . . . C 3 -14.557 23.199 -12.979 1 27.43 ? C3B BYC 402 A 1 HETATM 17 C C3D BYC . . . C 3 -25.796 28.49 -17.978 1 32.41 ? C3D BYC 402 A 1 HETATM 18 O O3D BYC . . . C 3 -26.526 29.373 -17.12 1 30.79 ? O3D BYC 402 A 1 HETATM 19 P P3D BYC . . . C 3 -27.446 28.597 -16.027 1 33.44 ? P3D BYC 402 A 1 HETATM 20 C C3P BYC . . . C 3 -13.942 26.631 -17.091 1 27.97 ? C3P BYC 402 A 1 HETATM 21 C C4A BYC . . . C 3 -23.656 31.718 -20.858 1 31.78 ? C4A BYC 402 A 1 HETATM 22 O O4A BYC . . . C 3 -21.066 23.877 -21.664 1 28.03 ? O4A BYC 402 A 1 HETATM 23 C C4B BYC . . . C 3 -15.452 22.63 -12.086 1 27.75 ? C4B BYC 402 A 1 HETATM 24 C C4D BYC . . . C 3 -24.328 28.423 -17.517 1 30.44 ? C4D BYC 402 A 1 HETATM 25 O O4D BYC . . . C 3 -23.677 29.523 -18.21 1 29.06 ? O4D BYC 402 A 1 HETATM 26 N N4P BYC . . . C 3 -13.431 26.517 -18.436 1 27.56 ? N4P BYC 402 A 1 HETATM 27 O O57 BYC . . . C 3 -12.797 24.433 -14.798 1 32.27 ? O57 BYC 402 A 1 HETATM 28 O O5A BYC . . . C 3 -21.091 26.318 -22.513 1 24.91 ? O5A BYC 402 A 1 HETATM 29 C C5B BYC . . . C 3 -16.235 23.435 -11.269 1 26.91 ? C5B BYC 402 A 1 HETATM 30 C C5D BYC . . . C 3 -23.575 27.139 -17.822 1 28 ? C5D BYC 402 A 1 HETATM 31 O O5D BYC . . . C 3 -23.768 26.848 -19.22 1 27.64 ? O5D BYC 402 A 1 HETATM 32 C C5M BYC . . . C 3 -22.794 31.539 -21.918 1 34.29 ? C5M BYC 402 A 1 HETATM 33 C C5P BYC . . . C 3 -13.147 27.556 -19.244 1 31.96 ? C5P BYC 402 A 1 HETATM 34 O O5P BYC . . . C 3 -13.423 28.701 -18.918 1 29.84 ? O5P BYC 402 A 1 HETATM 35 C C6A BYC . . . C 3 -22.45 32.668 -22.681 1 36.86 ? C6A BYC 402 A 1 HETATM 36 N N6A BYC . . . C 3 -21.573 32.644 -23.687 1 38.84 ? N6A BYC 402 A 1 HETATM 37 O O6A BYC . . . C 3 -19.389 25.505 -20.83 1 26.16 ? O6A BYC 402 A 1 HETATM 38 C C6B BYC . . . C 3 -16.087 24.794 -11.33 1 27.84 ? C6B BYC 402 A 1 HETATM 39 C C6P BYC . . . C 3 -12.626 27.248 -20.638 1 30.1 ? C6P BYC 402 A 1 HETATM 40 N N7A BYC . . . C 3 -22.41 30.206 -22.017 1 33.7 ? N7A BYC 402 A 1 HETATM 41 O O7A BYC . . . C 3 -26.491 27.679 -15.168 1 33.64 ? O7A BYC 402 A 1 HETATM 42 C C7B BYC . . . C 3 -15.2 25.373 -12.225 1 29.12 ? C7B BYC 402 A 1 HETATM 43 C C7P BYC . . . C 3 -13.306 28.074 -21.735 1 29.34 ? C7P BYC 402 A 1 HETATM 44 C C8A BYC . . . C 3 -23.03 29.628 -21.027 1 30.25 ? C8A BYC 402 A 1 HETATM 45 O O8A BYC . . . C 3 -28.107 29.664 -15.17 1 36.34 ? O8A BYC 402 A 1 HETATM 46 N N8P BYC . . . C 3 -14.766 28.029 -21.685 1 27.38 ? N8P BYC 402 A 1 HETATM 47 N N9A BYC . . . C 3 -23.823 30.476 -20.298 1 30.45 ? N9A BYC 402 A 1 HETATM 48 O O9A BYC . . . C 3 -28.424 27.756 -16.76 1 34.91 ? O9A BYC 402 A 1 HETATM 49 C C9P BYC . . . C 3 -15.487 26.938 -21.883 1 24.86 ? C9P BYC 402 A 1 HETATM 50 O O9P BYC . . . C 3 -14.979 25.842 -22.133 1 26.68 ? O9P BYC 402 A 1 HETATM 51 C CAP BYC . . . C 3 -16.991 27.074 -21.701 1 28.68 ? CAP BYC 402 A 1 HETATM 52 O OAP BYC . . . C 3 -17.391 28.345 -22.178 1 28.11 ? OAP BYC 402 A 1 HETATM 53 C CBP BYC . . . C 3 -17.495 26.874 -20.259 1 26.01 ? CBP BYC 402 A 1 HETATM 54 C CCP BYC . . . C 3 -19.008 26.741 -20.156 1 26.38 ? CCP BYC 402 A 1 HETATM 55 C CDP BYC . . . C 3 -16.855 25.598 -19.674 1 26.13 ? CDP BYC 402 A 1 HETATM 56 C CEP BYC . . . C 3 -17.089 28.083 -19.406 1 28.16 ? CEP BYC 402 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #