data_7PKK # _model_server_result.job_id T74cKi7vGezKbxrPrZwOOA _model_server_result.datetime_utc '2024-11-30 19:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7PKK # _exptl.entry_id 7PKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 601.711 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,4R)-1-cyclopropylcarbonyl-4-[[(2S,4S)-4-fluoranylpyrrolidin-2-yl]carbonylamino]-N-[[4-[2-[4-(morpholin-4-ylmethyl)phenyl]ethynyl]phenyl]methyl]pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.55 _cell.angle_gamma 90 _cell.entry_id 7PKK _cell.length_a 35.55 _cell.length_b 66.96 _cell.length_c 62.96 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 78 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 A NE2 HIS 250 A HIS 237 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A OD1 ASP 254 A ASP 241 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 A OD2 ASP 254 A ASP 241 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 B ZN ZN . A ZN 501 1_555 C N28 7TF . A 7TF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 B ZN ZN . A ZN 501 1_555 C O26 7TF . A 7TF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? # _chem_comp.formula 'C34 H40 F N5 O4' _chem_comp.formula_weight 601.711 _chem_comp.id 7TF _chem_comp.mon_nstd_flag . _chem_comp.name (2R,4R)-1-cyclopropylcarbonyl-4-[[(2S,4S)-4-fluoranylpyrrolidin-2-yl]carbonylamino]-N-[[4-[2-[4-(morpholin-4-ylmethyl)phenyl]ethynyl]phenyl]methyl]pyrrolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N28 C27 7TF sing 1 n n N28 C29 7TF sing 2 n n C27 C25 7TF sing 3 n n C27 C31 7TF sing 4 n n C29 C30 7TF sing 5 n n O26 C25 7TF doub 6 n n C25 N24 7TF sing 7 n n C31 C30 7TF sing 8 n n N24 C22 7TF sing 9 n n C30 F32 7TF sing 10 n n C22 C21 7TF sing 11 n n C22 C23 7TF sing 12 n n C21 N20 7TF sing 13 n n C23 C19 7TF sing 14 n n N20 C19 7TF sing 15 n n N20 C33 7TF sing 16 n n O18 C17 7TF doub 17 n n C19 C17 7TF sing 18 n n C17 N16 7TF sing 19 n n O34 C33 7TF doub 20 n n C33 C35 7TF sing 21 n n N16 C1 7TF sing 22 n n C1 C2 7TF sing 23 n n C3 C2 7TF doub 24 n y C3 C4 7TF sing 25 n y C2 C7 7TF sing 26 n y C35 C37 7TF sing 27 n n C35 C36 7TF sing 28 n n C4 C5 7TF doub 29 n y C37 C36 7TF sing 30 n n C7 C6 7TF doub 31 n y C5 C6 7TF sing 32 n y C5 C8 7TF sing 33 n n C8 C9 7TF trip 34 n n C9 C10 7TF sing 35 n n C10 C11 7TF doub 36 n y C10 C15 7TF sing 37 n y C11 C12 7TF sing 38 n y C15 C14 7TF doub 39 n y C12 C13 7TF doub 40 n y C14 C13 7TF sing 41 n y C13 C16 7TF sing 42 n n C24 C20 7TF sing 43 n n C24 O36 7TF sing 44 n n C20 N18 7TF sing 45 n n N18 C16 7TF sing 46 n n N18 C32 7TF sing 47 n n O36 C28 7TF sing 48 n n C28 C32 7TF sing 49 n n C7 H1 7TF sing 50 n n C6 H2 7TF sing 51 n n C1 H3 7TF sing 52 n n C1 H4 7TF sing 53 n n C3 H5 7TF sing 54 n n C4 H6 7TF sing 55 n n C14 H7 7TF sing 56 n n C15 H8 7TF sing 57 n n C16 H9 7TF sing 58 n n C16 H10 7TF sing 59 n n C12 H11 7TF sing 60 n n C11 H12 7TF sing 61 n n N16 H13 7TF sing 62 n n C19 H14 7TF sing 63 n n C21 H15 7TF sing 64 n n C21 H16 7TF sing 65 n n C22 H17 7TF sing 66 n n C23 H18 7TF sing 67 n n C23 H19 7TF sing 68 n n N24 H20 7TF sing 69 n n C27 H21 7TF sing 70 n n N28 H22 7TF sing 71 n n C29 H24 7TF sing 72 n n C29 H25 7TF sing 73 n n C30 H26 7TF sing 74 n n C31 H27 7TF sing 75 n n C31 H28 7TF sing 76 n n C35 H29 7TF sing 77 n n C36 H30 7TF sing 78 n n C36 H31 7TF sing 79 n n C37 H32 7TF sing 80 n n C37 H33 7TF sing 81 n n C20 H35 7TF sing 82 n n C20 H36 7TF sing 83 n n C24 H37 7TF sing 84 n n C24 H38 7TF sing 85 n n C28 H39 7TF sing 86 n n C28 H40 7TF sing 87 n n C32 H41 7TF sing 88 n n C32 H42 7TF sing 89 n n # _atom_sites.entry_id 7PKK _atom_sites.fract_transf_matrix[1][1] 0.028129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 7TF A 1 502 1 7TF 467 . D 4 HOH A 1 601 74 HOH HOH . D 4 HOH A 2 602 147 HOH HOH . D 4 HOH A 3 603 123 HOH HOH . D 4 HOH A 4 604 119 HOH HOH . D 4 HOH A 5 605 12 HOH HOH . D 4 HOH A 6 606 26 HOH HOH . D 4 HOH A 7 607 69 HOH HOH . D 4 HOH A 8 608 88 HOH HOH . D 4 HOH A 9 609 136 HOH HOH . D 4 HOH A 10 610 135 HOH HOH . D 4 HOH A 11 611 2 HOH HOH . D 4 HOH A 12 612 283 HOH HOH . D 4 HOH A 13 613 82 HOH HOH . D 4 HOH A 14 614 15 HOH HOH . D 4 HOH A 15 615 34 HOH HOH . D 4 HOH A 16 616 95 HOH HOH . D 4 HOH A 17 617 46 HOH HOH . D 4 HOH A 18 618 240 HOH HOH . D 4 HOH A 19 619 113 HOH HOH . D 4 HOH A 20 620 5 HOH HOH . D 4 HOH A 21 621 153 HOH HOH . D 4 HOH A 22 622 68 HOH HOH . D 4 HOH A 23 623 100 HOH HOH . D 4 HOH A 24 624 144 HOH HOH . D 4 HOH A 25 625 52 HOH HOH . D 4 HOH A 26 626 6 HOH HOH . D 4 HOH A 27 627 66 HOH HOH . D 4 HOH A 28 628 63 HOH HOH . D 4 HOH A 29 629 112 HOH HOH . D 4 HOH A 30 630 11 HOH HOH . D 4 HOH A 31 631 183 HOH HOH . D 4 HOH A 32 632 223 HOH HOH . D 4 HOH A 33 633 51 HOH HOH . D 4 HOH A 34 634 268 HOH HOH . D 4 HOH A 35 635 212 HOH HOH . D 4 HOH A 36 636 137 HOH HOH . D 4 HOH A 37 637 161 HOH HOH . D 4 HOH A 38 638 17 HOH HOH . D 4 HOH A 39 639 177 HOH HOH . D 4 HOH A 40 640 96 HOH HOH . D 4 HOH A 41 641 271 HOH HOH . D 4 HOH A 42 642 16 HOH HOH . D 4 HOH A 43 643 21 HOH HOH . D 4 HOH A 44 644 155 HOH HOH . D 4 HOH A 45 645 272 HOH HOH . D 4 HOH A 46 646 101 HOH HOH . D 4 HOH A 47 647 182 HOH HOH . D 4 HOH A 48 648 25 HOH HOH . D 4 HOH A 49 649 116 HOH HOH . D 4 HOH A 50 650 197 HOH HOH . D 4 HOH A 51 651 84 HOH HOH . D 4 HOH A 52 652 39 HOH HOH . D 4 HOH A 53 653 126 HOH HOH . D 4 HOH A 54 654 172 HOH HOH . D 4 HOH A 55 655 117 HOH HOH . D 4 HOH A 56 656 41 HOH HOH . D 4 HOH A 57 657 262 HOH HOH . D 4 HOH A 58 658 27 HOH HOH . D 4 HOH A 59 659 33 HOH HOH . D 4 HOH A 60 660 114 HOH HOH . D 4 HOH A 61 661 234 HOH HOH . D 4 HOH A 62 662 165 HOH HOH . D 4 HOH A 63 663 43 HOH HOH . D 4 HOH A 64 664 264 HOH HOH . D 4 HOH A 65 665 213 HOH HOH . D 4 HOH A 66 666 174 HOH HOH . D 4 HOH A 67 667 228 HOH HOH . D 4 HOH A 68 668 40 HOH HOH . D 4 HOH A 69 669 29 HOH HOH . D 4 HOH A 70 670 72 HOH HOH . D 4 HOH A 71 671 160 HOH HOH . D 4 HOH A 72 672 232 HOH HOH . D 4 HOH A 73 673 149 HOH HOH . D 4 HOH A 74 674 265 HOH HOH . D 4 HOH A 75 675 216 HOH HOH . D 4 HOH A 76 676 73 HOH HOH . D 4 HOH A 77 677 145 HOH HOH . D 4 HOH A 78 678 273 HOH HOH . D 4 HOH A 79 679 151 HOH HOH . D 4 HOH A 80 680 158 HOH HOH . D 4 HOH A 81 681 154 HOH HOH . D 4 HOH A 82 682 263 HOH HOH . D 4 HOH A 83 683 139 HOH HOH . D 4 HOH A 84 684 238 HOH HOH . D 4 HOH A 85 685 90 HOH HOH . D 4 HOH A 86 686 115 HOH HOH . D 4 HOH A 87 687 103 HOH HOH . D 4 HOH A 88 688 201 HOH HOH . D 4 HOH A 89 689 217 HOH HOH . D 4 HOH A 90 690 99 HOH HOH . D 4 HOH A 91 691 148 HOH HOH . D 4 HOH A 92 692 258 HOH HOH . D 4 HOH A 93 693 204 HOH HOH . D 4 HOH A 94 694 256 HOH HOH . D 4 HOH A 95 695 221 HOH HOH . D 4 HOH A 96 696 282 HOH HOH . D 4 HOH A 97 697 195 HOH HOH . D 4 HOH A 98 698 254 HOH HOH . D 4 HOH A 99 699 81 HOH HOH . D 4 HOH A 100 700 269 HOH HOH . D 4 HOH A 101 701 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 7TF . . . C 3 -5.503 13.362 -2.827 1 61.92 ? C7 7TF 502 A 1 HETATM 2 C C8 7TF . . . C 3 -2.124 12.504 -1.941 1 48.44 ? C8 7TF 502 A 1 HETATM 3 C C9 7TF . . . C 3 -1.273 12.118 -1.196 1 50.71 ? C9 7TF 502 A 1 HETATM 4 C C6 7TF . . . C 3 -4.4 12.913 -2.094 1 57.25 ? C6 7TF 502 A 1 HETATM 5 C C1 7TF . . . C 3 -6.572 14.327 -4.9 1 54.56 ? C1 7TF 502 A 1 HETATM 6 C C2 7TF . . . C 3 -5.355 13.842 -4.127 1 52.39 ? C2 7TF 502 A 1 HETATM 7 C C3 7TF . . . C 3 -4.08 13.871 -4.685 1 48.41 ? C3 7TF 502 A 1 HETATM 8 C C4 7TF . . . C 3 -2.975 13.418 -3.953 1 50.78 ? C4 7TF 502 A 1 HETATM 9 C C5 7TF . . . C 3 -3.124 12.934 -2.65 1 51.11 ? C5 7TF 502 A 1 HETATM 10 C C10 7TF . . . C 3 -0.446 11.76 -0.264 1 51.25 ? C10 7TF 502 A 1 HETATM 11 C C13 7TF . . . C 3 1.282 11.019 1.798 1 67.04 ? C13 7TF 502 A 1 HETATM 12 C C14 7TF . . . C 3 0.081 10.355 1.623 1 57.66 ? C14 7TF 502 A 1 HETATM 13 C C15 7TF . . . C 3 -0.781 10.725 0.601 1 52.44 ? C15 7TF 502 A 1 HETATM 14 C C16 7TF . . . C 3 2.188 10.604 2.928 1 77.82 ? C16 7TF 502 A 1 HETATM 15 C C12 7TF . . . C 3 1.623 12.064 0.95 1 63.01 ? C12 7TF 502 A 1 HETATM 16 C C11 7TF . . . C 3 0.755 12.435 -0.076 1 56.36 ? C11 7TF 502 A 1 HETATM 17 N N16 7TF . . . C 3 -6.448 15.747 -5.187 1 55.02 ? N16 7TF 502 A 1 HETATM 18 C C17 7TF . . . C 3 -7.387 16.47 -5.805 1 49.96 ? C17 7TF 502 A 1 HETATM 19 O O18 7TF . . . C 3 -8.45 16 -6.184 1 52.15 ? O18 7TF 502 A 1 HETATM 20 C C19 7TF . . . C 3 -7.04 17.929 -6.024 1 44.51 ? C19 7TF 502 A 1 HETATM 21 N N20 7TF . . . C 3 -8.163 18.826 -6.321 1 41.09 ? N20 7TF 502 A 1 HETATM 22 C C21 7TF . . . C 3 -8.262 19.13 -7.75 1 41.08 ? C21 7TF 502 A 1 HETATM 23 C C22 7TF . . . C 3 -7.153 18.314 -8.396 1 44.92 ? C22 7TF 502 A 1 HETATM 24 C C23 7TF . . . C 3 -6.177 18.064 -7.265 1 43.57 ? C23 7TF 502 A 1 HETATM 25 N N24 7TF . . . C 3 -7.686 17.061 -8.93 1 48.04 ? N24 7TF 502 A 1 HETATM 26 C C25 7TF . . . C 3 -6.929 16.171 -9.583 1 49.99 ? C25 7TF 502 A 1 HETATM 27 O O26 7TF . . . C 3 -5.725 16.299 -9.743 1 45.47 ? O26 7TF 502 A 1 HETATM 28 C C27 7TF . . . C 3 -7.615 14.976 -10.182 1 56.51 ? C27 7TF 502 A 1 HETATM 29 N N28 7TF . . . C 3 -6.625 14.173 -10.924 1 60.38 ? N28 7TF 502 A 1 HETATM 30 C C29 7TF . . . C 3 -6.194 13.055 -10.061 1 56.41 ? C29 7TF 502 A 1 HETATM 31 C C30 7TF . . . C 3 -7.05 13.085 -8.805 1 56.37 ? C30 7TF 502 A 1 HETATM 32 C C31 7TF . . . C 3 -8.166 14.062 -9.105 1 60.2 ? C31 7TF 502 A 1 HETATM 33 F F32 7TF . . . C 3 -6.325 13.566 -7.748 1 57.4 ? F32 7TF 502 A 1 HETATM 34 C C33 7TF . . . C 3 -8.964 19.301 -5.364 1 37.44 ? C33 7TF 502 A 1 HETATM 35 O O34 7TF . . . C 3 -9.839 20.118 -5.579 1 36.57 ? O34 7TF 502 A 1 HETATM 36 C C35 7TF . . . C 3 -8.793 18.794 -3.968 1 38.82 ? C35 7TF 502 A 1 HETATM 37 C C36 7TF . . . C 3 -9.223 19.733 -2.851 1 39.39 ? C36 7TF 502 A 1 HETATM 38 C C37 7TF . . . C 3 -10.113 18.557 -3.24 1 43.77 ? C37 7TF 502 A 1 HETATM 39 N N18 7TF . . . C 3 3.588 10.541 2.508 1 86.37 ? N18 7TF 502 A 1 HETATM 40 C C20 7TF . . . C 3 3.8 9.197 1.937 1 87.26 ? C20 7TF 502 A 1 HETATM 41 C C24 7TF . . . C 3 5.28 8.86 1.82 1 87.18 ? C24 7TF 502 A 1 HETATM 42 O O36 7TF . . . C 3 5.889 9.004 3.101 1 85.3 ? O36 7TF 502 A 1 HETATM 43 C C28 7TF . . . C 3 5.83 10.355 3.547 1 92.56 ? C28 7TF 502 A 1 HETATM 44 C C32 7TF . . . C 3 4.379 10.778 3.728 1 87.91 ? C32 7TF 502 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #