data_7PL2 # _model_server_result.job_id uWSFNdq52_5mXnVn9FI59w _model_server_result.datetime_utc '2025-01-10 11:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1905}' # _entry.id 7PL2 # _exptl.entry_id 7PL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.171 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLINE ION' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7PL2 _cell.length_a 202.1 _cell.length_b 202.1 _cell.length_c 26.468 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C5 H14 N O 1' _chem_comp.formula_weight 104.171 _chem_comp.id CHT _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLINE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 CHT sing 70 n n C4 O6 CHT sing 71 n n C4 HC41 CHT sing 72 n n C4 HC42 CHT sing 73 n n C5 N1 CHT sing 74 n n C5 HC51 CHT sing 75 n n C5 HC52 CHT sing 76 n n C6 N1 CHT sing 77 n n C6 H61 CHT sing 78 n n C6 H62 CHT sing 79 n n C6 H63 CHT sing 80 n n C7 N1 CHT sing 81 n n C7 H71 CHT sing 82 n n C7 H72 CHT sing 83 n n C7 H73 CHT sing 84 n n C8 N1 CHT sing 85 n n C8 H81 CHT sing 86 n n C8 H82 CHT sing 87 n n C8 H83 CHT sing 88 n n O6 HO6 CHT sing 89 n n # _atom_sites.entry_id 7PL2 _atom_sites.fract_transf_matrix[1][1] 0.004948 _atom_sites.fract_transf_matrix[1][2] 0.002857 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.037781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CHT A 1 1901 1901 CHT CHT . C 2 CHT A 1 1902 2001 CHT CHT . D 2 CHT A 1 1903 2101 CHT CHT . E 2 CHT A 1 1904 2201 CHT CHT . F 2 CHT A 1 1905 2301 CHT CHT . G 2 CHT A 1 1906 2401 CHT CHT . H 2 CHT A 1 1907 2501 CHT CHT . I 2 CHT A 1 1908 2601 CHT CHT . J 2 CHT A 1 1909 2701 CHT CHT . K 2 CHT A 1 1910 2801 CHT CHT . L 2 CHT A 1 1911 2901 CHT CHT . M 2 CHT A 1 1912 3001 CHT CHT . N 2 CHT A 1 1913 3101 CHT CHT . O 2 CHT A 1 1914 3201 CHT CHT . P 2 CHT A 1 1915 3301 CHT CHT . Q 2 CHT A 1 1916 3401 CHT CHT . R 2 CHT A 1 1917 3501 CHT CHT . S 3 HOH A 1 2001 22 HOH HOH . S 3 HOH A 2 2002 29 HOH HOH . S 3 HOH A 3 2003 18 HOH HOH . S 3 HOH A 4 2004 24 HOH HOH . S 3 HOH A 5 2005 23 HOH HOH . S 3 HOH A 6 2006 17 HOH HOH . S 3 HOH A 7 2007 13 HOH HOH . S 3 HOH A 8 2008 16 HOH HOH . S 3 HOH A 9 2009 27 HOH HOH . S 3 HOH A 10 2010 19 HOH HOH . S 3 HOH A 11 2011 28 HOH HOH . S 3 HOH A 12 2012 1 HOH HOH . S 3 HOH A 13 2013 20 HOH HOH . S 3 HOH A 14 2014 2 HOH HOH . S 3 HOH A 15 2015 10 HOH HOH . S 3 HOH A 16 2016 8 HOH HOH . S 3 HOH A 17 2017 15 HOH HOH . S 3 HOH A 18 2018 33 HOH HOH . S 3 HOH A 19 2019 4 HOH HOH . S 3 HOH A 20 2020 14 HOH HOH . S 3 HOH A 21 2021 31 HOH HOH . S 3 HOH A 22 2022 32 HOH HOH . S 3 HOH A 23 2023 12 HOH HOH . S 3 HOH A 24 2024 21 HOH HOH . S 3 HOH A 25 2025 30 HOH HOH . S 3 HOH A 26 2026 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 CHT . . . F 2 -45.42 76.836 18.305 1 48.75 ? C4 CHT 1905 A 1 HETATM 2 C C5 CHT . . . F 2 -45.179 75.568 17.472 1 48.75 ? C5 CHT 1905 A 1 HETATM 3 C C6 CHT . . . F 2 -42.851 76.253 17.41 1 48.75 ? C6 CHT 1905 A 1 HETATM 4 C C7 CHT . . . F 2 -43.606 74.226 16.318 1 48.75 ? C7 CHT 1905 A 1 HETATM 5 C C8 CHT . . . F 2 -43.496 74.337 18.66 1 48.75 ? C8 CHT 1905 A 1 HETATM 6 O O6 CHT . . . F 2 -46.851 77.089 18.505 1 48.75 ? O6 CHT 1905 A 1 HETATM 7 N N1 CHT . . . F 2 -43.779 75.115 17.465 1 48.75 ? N1 CHT 1905 A 1 HETATM 8 H HC41 CHT . . . F 2 -44.933 76.727 19.276 1 39.74 ? HC41 CHT 1905 A 1 HETATM 9 H HC42 CHT . . . F 2 -44.969 77.691 17.798 1 39.74 ? HC42 CHT 1905 A 1 HETATM 10 H HC51 CHT . . . F 2 -45.49 75.761 16.443 1 39.74 ? HC51 CHT 1905 A 1 HETATM 11 H HC52 CHT . . . F 2 -45.805 74.766 17.867 1 39.74 ? HC52 CHT 1905 A 1 HETATM 12 H H61 CHT . . . F 2 -43.19 76.951 16.689 1 39.74 ? H61 CHT 1905 A 1 HETATM 13 H H62 CHT . . . F 2 -41.886 75.91 17.14 1 39.74 ? H62 CHT 1905 A 1 HETATM 14 H H63 CHT . . . F 2 -42.807 76.72 18.359 1 39.74 ? H63 CHT 1905 A 1 HETATM 15 H H71 CHT . . . F 2 -42.667 73.741 16.385 1 39.74 ? H71 CHT 1905 A 1 HETATM 16 H H72 CHT . . . F 2 -43.648 74.792 15.424 1 39.74 ? H72 CHT 1905 A 1 HETATM 17 H H73 CHT . . . F 2 -44.378 73.501 16.314 1 39.74 ? H73 CHT 1905 A 1 HETATM 18 H H81 CHT . . . F 2 -43.698 74.923 19.518 1 39.74 ? H81 CHT 1905 A 1 HETATM 19 H H82 CHT . . . F 2 -42.476 74.05 18.66 1 39.74 ? H82 CHT 1905 A 1 HETATM 20 H H83 CHT . . . F 2 -44.106 73.472 18.671 1 39.74 ? H83 CHT 1905 A 1 HETATM 21 H HO6 CHT . . . F 2 -46.966 77.859 19.077 1 39.74 ? HO6 CHT 1905 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #