data_7PL3 # _model_server_result.job_id BEBEmVPH3oKka8NNmYIq9A _model_server_result.datetime_utc '2025-01-10 11:07:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7PL3 # _exptl.entry_id 7PL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PL3 _cell.length_a 47.157 _cell.length_b 92.675 _cell.length_c 124.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 16 A ASP 421 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A OD2 ASP 18 A ASP 423 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 A OE1 GLU 20 A GLU 425 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A OD2 ASP 98 A ASP 503 1_555 E CA CA . A CA 704 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 A O GLY 115 A GLY 520 1_555 E CA CA . A CA 704 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 E CA CA . A CA 704 1_555 F O HOH . A HOH 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 7PL3 _atom_sites.fract_transf_matrix[1][1] 0.021206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 701 701 1PE 1PE . C 3 PEG A 1 702 702 PEG PEG . D 3 PEG A 1 703 703 PEG PEG . E 4 CA A 1 704 1 CA CA . F 5 HOH A 1 801 121 HOH HOH . F 5 HOH A 2 802 73 HOH HOH . F 5 HOH A 3 803 156 HOH HOH . F 5 HOH A 4 804 122 HOH HOH . F 5 HOH A 5 805 132 HOH HOH . F 5 HOH A 6 806 21 HOH HOH . F 5 HOH A 7 807 37 HOH HOH . F 5 HOH A 8 808 4 HOH HOH . F 5 HOH A 9 809 39 HOH HOH . F 5 HOH A 10 810 75 HOH HOH . F 5 HOH A 11 811 99 HOH HOH . F 5 HOH A 12 812 129 HOH HOH . F 5 HOH A 13 813 112 HOH HOH . F 5 HOH A 14 814 136 HOH HOH . F 5 HOH A 15 815 74 HOH HOH . F 5 HOH A 16 816 35 HOH HOH . F 5 HOH A 17 817 56 HOH HOH . F 5 HOH A 18 818 44 HOH HOH . F 5 HOH A 19 819 104 HOH HOH . F 5 HOH A 20 820 96 HOH HOH . F 5 HOH A 21 821 13 HOH HOH . F 5 HOH A 22 822 41 HOH HOH . F 5 HOH A 23 823 5 HOH HOH . F 5 HOH A 24 824 9 HOH HOH . F 5 HOH A 25 825 71 HOH HOH . F 5 HOH A 26 826 45 HOH HOH . F 5 HOH A 27 827 28 HOH HOH . F 5 HOH A 28 828 34 HOH HOH . F 5 HOH A 29 829 80 HOH HOH . F 5 HOH A 30 830 79 HOH HOH . F 5 HOH A 31 831 82 HOH HOH . F 5 HOH A 32 832 53 HOH HOH . F 5 HOH A 33 833 153 HOH HOH . F 5 HOH A 34 834 50 HOH HOH . F 5 HOH A 35 835 92 HOH HOH . F 5 HOH A 36 836 14 HOH HOH . F 5 HOH A 37 837 46 HOH HOH . F 5 HOH A 38 838 124 HOH HOH . F 5 HOH A 39 839 47 HOH HOH . F 5 HOH A 40 840 68 HOH HOH . F 5 HOH A 41 841 22 HOH HOH . F 5 HOH A 42 842 49 HOH HOH . F 5 HOH A 43 843 133 HOH HOH . F 5 HOH A 44 844 70 HOH HOH . F 5 HOH A 45 845 20 HOH HOH . F 5 HOH A 46 846 145 HOH HOH . F 5 HOH A 47 847 15 HOH HOH . F 5 HOH A 48 848 10 HOH HOH . F 5 HOH A 49 849 101 HOH HOH . F 5 HOH A 50 850 24 HOH HOH . F 5 HOH A 51 851 55 HOH HOH . F 5 HOH A 52 852 155 HOH HOH . F 5 HOH A 53 853 26 HOH HOH . F 5 HOH A 54 854 6 HOH HOH . F 5 HOH A 55 855 67 HOH HOH . F 5 HOH A 56 856 32 HOH HOH . F 5 HOH A 57 857 77 HOH HOH . F 5 HOH A 58 858 19 HOH HOH . F 5 HOH A 59 859 17 HOH HOH . F 5 HOH A 60 860 72 HOH HOH . F 5 HOH A 61 861 8 HOH HOH . F 5 HOH A 62 862 81 HOH HOH . F 5 HOH A 63 863 2 HOH HOH . F 5 HOH A 64 864 52 HOH HOH . F 5 HOH A 65 865 76 HOH HOH . F 5 HOH A 66 866 94 HOH HOH . F 5 HOH A 67 867 48 HOH HOH . F 5 HOH A 68 868 105 HOH HOH . F 5 HOH A 69 869 66 HOH HOH . F 5 HOH A 70 870 43 HOH HOH . F 5 HOH A 71 871 95 HOH HOH . F 5 HOH A 72 872 89 HOH HOH . F 5 HOH A 73 873 125 HOH HOH . F 5 HOH A 74 874 61 HOH HOH . F 5 HOH A 75 875 154 HOH HOH . F 5 HOH A 76 876 36 HOH HOH . F 5 HOH A 77 877 25 HOH HOH . F 5 HOH A 78 878 87 HOH HOH . F 5 HOH A 79 879 90 HOH HOH . F 5 HOH A 80 880 151 HOH HOH . F 5 HOH A 81 881 88 HOH HOH . F 5 HOH A 82 882 7 HOH HOH . F 5 HOH A 83 883 58 HOH HOH . F 5 HOH A 84 884 142 HOH HOH . F 5 HOH A 85 885 42 HOH HOH . F 5 HOH A 86 886 63 HOH HOH . F 5 HOH A 87 887 54 HOH HOH . F 5 HOH A 88 888 109 HOH HOH . F 5 HOH A 89 889 83 HOH HOH . F 5 HOH A 90 890 51 HOH HOH . F 5 HOH A 91 891 31 HOH HOH . F 5 HOH A 92 892 134 HOH HOH . F 5 HOH A 93 893 123 HOH HOH . F 5 HOH A 94 894 60 HOH HOH . F 5 HOH A 95 895 131 HOH HOH . F 5 HOH A 96 896 148 HOH HOH . F 5 HOH A 97 897 111 HOH HOH . F 5 HOH A 98 898 59 HOH HOH . F 5 HOH A 99 899 113 HOH HOH . F 5 HOH A 100 900 29 HOH HOH . F 5 HOH A 101 901 27 HOH HOH . F 5 HOH A 102 902 138 HOH HOH . F 5 HOH A 103 903 84 HOH HOH . F 5 HOH A 104 904 30 HOH HOH . F 5 HOH A 105 905 33 HOH HOH . F 5 HOH A 106 906 16 HOH HOH . F 5 HOH A 107 907 12 HOH HOH . F 5 HOH A 108 908 78 HOH HOH . F 5 HOH A 109 909 141 HOH HOH . F 5 HOH A 110 910 23 HOH HOH . F 5 HOH A 111 911 69 HOH HOH . F 5 HOH A 112 912 86 HOH HOH . F 5 HOH A 113 913 144 HOH HOH . F 5 HOH A 114 914 143 HOH HOH . F 5 HOH A 115 915 149 HOH HOH . F 5 HOH A 116 916 18 HOH HOH . F 5 HOH A 117 917 116 HOH HOH . F 5 HOH A 118 918 40 HOH HOH . F 5 HOH A 119 919 103 HOH HOH . F 5 HOH A 120 920 117 HOH HOH . F 5 HOH A 121 921 152 HOH HOH . F 5 HOH A 122 922 150 HOH HOH . F 5 HOH A 123 923 137 HOH HOH . F 5 HOH A 124 924 114 HOH HOH . F 5 HOH A 125 925 91 HOH HOH . F 5 HOH A 126 926 130 HOH HOH . F 5 HOH A 127 927 102 HOH HOH . F 5 HOH A 128 928 146 HOH HOH . F 5 HOH A 129 929 97 HOH HOH . F 5 HOH A 130 930 98 HOH HOH . F 5 HOH A 131 931 110 HOH HOH . F 5 HOH A 132 932 115 HOH HOH . F 5 HOH A 133 933 120 HOH HOH . F 5 HOH A 134 934 64 HOH HOH . F 5 HOH A 135 935 65 HOH HOH . F 5 HOH A 136 936 93 HOH HOH . F 5 HOH A 137 937 147 HOH HOH . F 5 HOH A 138 938 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . B 2 -7.545 26.871 -6.185 1 30.18 ? OH2 1PE 701 A 1 HETATM 2 C C12 1PE . . . B 2 -8.513 26.303 -5.333 1 31.15 ? C12 1PE 701 A 1 HETATM 3 C C22 1PE . . . B 2 -9.72 27.133 -5.221 1 30.28 ? C22 1PE 701 A 1 HETATM 4 O OH3 1PE . . . B 2 -10.299 27.283 -6.511 1 40.82 ? OH3 1PE 701 A 1 HETATM 5 C C13 1PE . . . B 2 -11.747 28.783 -7.758 1 34.6 ? C13 1PE 701 A 1 HETATM 6 C C23 1PE . . . B 2 -11.519 28.011 -6.497 1 37.31 ? C23 1PE 701 A 1 HETATM 7 O OH4 1PE . . . B 2 -10.752 29.761 -8.007 1 36.77 ? OH4 1PE 701 A 1 HETATM 8 C C14 1PE . . . B 2 -10.009 31.51 -9.423 1 30.6 ? C14 1PE 701 A 1 HETATM 9 C C24 1PE . . . B 2 -11.194 30.884 -8.775 1 33.19 ? C24 1PE 701 A 1 HETATM 10 O OH5 1PE . . . B 2 -9.072 31.811 -8.417 1 41.77 ? OH5 1PE 701 A 1 HETATM 11 C C15 1PE . . . B 2 -6.729 31.585 -8.74 1 44.78 ? C15 1PE 701 A 1 HETATM 12 C C25 1PE . . . B 2 -7.904 32.525 -8.831 1 46.41 ? C25 1PE 701 A 1 HETATM 13 O OH6 1PE . . . B 2 -5.599 32.107 -8.058 1 53.19 ? OH6 1PE 701 A 1 HETATM 14 C C16 1PE . . . B 2 -4.832 29.983 -7.126 1 34.95 ? C16 1PE 701 A 1 HETATM 15 C C26 1PE . . . B 2 -5.237 31.397 -6.859 1 48.44 ? C26 1PE 701 A 1 HETATM 16 O OH7 1PE . . . B 2 -4.883 29.138 -5.962 1 49.01 ? OH7 1PE 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #