data_7PLK # _model_server_result.job_id UnvhsTqQwGzwVk57A1nsWg _model_server_result.datetime_utc '2024-11-29 22:08:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7plk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7PLK # _exptl.entry_id 7PLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.548 _cell.angle_gamma 90 _cell.entry_id 7PLK _cell.length_a 66.078 _cell.length_b 48.799 _cell.length_c 86.476 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 10 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc2 A O LEU 11 A LEU 11 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? metalc ? metalc3 A O THR 145 A THR 145 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc4 A OG1 THR 145 A THR 145 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc5 A OE1 GLU 175 A GLU 175 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 106 n n N1 C6 EPE sing 107 n n N1 C9 EPE sing 108 n n C2 C3 EPE sing 109 n n C2 H21 EPE sing 110 n n C2 H22 EPE sing 111 n n C3 N4 EPE sing 112 n n C3 H31 EPE sing 113 n n C3 H32 EPE sing 114 n n N4 C5 EPE sing 115 n n N4 C7 EPE sing 116 n n C5 C6 EPE sing 117 n n C5 H51 EPE sing 118 n n C5 H52 EPE sing 119 n n C6 H61 EPE sing 120 n n C6 H62 EPE sing 121 n n C7 C8 EPE sing 122 n n C7 H71 EPE sing 123 n n C7 H72 EPE sing 124 n n C8 O8 EPE sing 125 n n C8 H81 EPE sing 126 n n C8 H82 EPE sing 127 n n O8 HO8 EPE sing 128 n n C9 C10 EPE sing 129 n n C9 H91 EPE sing 130 n n C9 H92 EPE sing 131 n n C10 S EPE sing 132 n n C10 H101 EPE sing 133 n n C10 H102 EPE sing 134 n n S O1S EPE doub 135 n n S O2S EPE doub 136 n n S O3S EPE sing 137 n n O3S HOS3 EPE sing 138 n n # _atom_sites.entry_id 7PLK _atom_sites.fract_transf_matrix[1][1] 0.015134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002546 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7UE A 1 601 1 7UE PNS . C 3 K A 1 602 1 K K . D 4 EPE A 1 603 1 EPE EPE . E 5 GOL A 1 604 1 GOL GOL . F 6 HOH A 1 701 47 HOH HOH . F 6 HOH A 2 702 11 HOH HOH . F 6 HOH A 3 703 5 HOH HOH . F 6 HOH A 4 704 17 HOH HOH . F 6 HOH A 5 705 71 HOH HOH . F 6 HOH A 6 706 23 HOH HOH . F 6 HOH A 7 707 65 HOH HOH . F 6 HOH A 8 708 48 HOH HOH . F 6 HOH A 9 709 36 HOH HOH . F 6 HOH A 10 710 51 HOH HOH . F 6 HOH A 11 711 85 HOH HOH . F 6 HOH A 12 712 63 HOH HOH . F 6 HOH A 13 713 31 HOH HOH . F 6 HOH A 14 714 3 HOH HOH . F 6 HOH A 15 715 73 HOH HOH . F 6 HOH A 16 716 2 HOH HOH . F 6 HOH A 17 717 34 HOH HOH . F 6 HOH A 18 718 37 HOH HOH . F 6 HOH A 19 719 16 HOH HOH . F 6 HOH A 20 720 18 HOH HOH . F 6 HOH A 21 721 8 HOH HOH . F 6 HOH A 22 722 27 HOH HOH . F 6 HOH A 23 723 25 HOH HOH . F 6 HOH A 24 724 10 HOH HOH . F 6 HOH A 25 725 89 HOH HOH . F 6 HOH A 26 726 33 HOH HOH . F 6 HOH A 27 727 22 HOH HOH . F 6 HOH A 28 728 15 HOH HOH . F 6 HOH A 29 729 69 HOH HOH . F 6 HOH A 30 730 93 HOH HOH . F 6 HOH A 31 731 12 HOH HOH . F 6 HOH A 32 732 9 HOH HOH . F 6 HOH A 33 733 52 HOH HOH . F 6 HOH A 34 734 74 HOH HOH . F 6 HOH A 35 735 4 HOH HOH . F 6 HOH A 36 736 68 HOH HOH . F 6 HOH A 37 737 40 HOH HOH . F 6 HOH A 38 738 39 HOH HOH . F 6 HOH A 39 739 54 HOH HOH . F 6 HOH A 40 740 45 HOH HOH . F 6 HOH A 41 741 43 HOH HOH . F 6 HOH A 42 742 56 HOH HOH . F 6 HOH A 43 743 57 HOH HOH . F 6 HOH A 44 744 32 HOH HOH . F 6 HOH A 45 745 80 HOH HOH . F 6 HOH A 46 746 35 HOH HOH . F 6 HOH A 47 747 59 HOH HOH . F 6 HOH A 48 748 20 HOH HOH . F 6 HOH A 49 749 50 HOH HOH . F 6 HOH A 50 750 1 HOH HOH . F 6 HOH A 51 751 26 HOH HOH . F 6 HOH A 52 752 41 HOH HOH . F 6 HOH A 53 753 75 HOH HOH . F 6 HOH A 54 754 67 HOH HOH . F 6 HOH A 55 755 28 HOH HOH . F 6 HOH A 56 756 82 HOH HOH . F 6 HOH A 57 757 29 HOH HOH . F 6 HOH A 58 758 49 HOH HOH . F 6 HOH A 59 759 30 HOH HOH . F 6 HOH A 60 760 55 HOH HOH . F 6 HOH A 61 761 42 HOH HOH . F 6 HOH A 62 762 76 HOH HOH . F 6 HOH A 63 763 19 HOH HOH . F 6 HOH A 64 764 62 HOH HOH . F 6 HOH A 65 765 81 HOH HOH . F 6 HOH A 66 766 21 HOH HOH . F 6 HOH A 67 767 92 HOH HOH . F 6 HOH A 68 768 87 HOH HOH . F 6 HOH A 69 769 83 HOH HOH . F 6 HOH A 70 770 53 HOH HOH . F 6 HOH A 71 771 79 HOH HOH . F 6 HOH A 72 772 7 HOH HOH . F 6 HOH A 73 773 13 HOH HOH . F 6 HOH A 74 774 6 HOH HOH . F 6 HOH A 75 775 44 HOH HOH . F 6 HOH A 76 776 88 HOH HOH . F 6 HOH A 77 777 84 HOH HOH . F 6 HOH A 78 778 64 HOH HOH . F 6 HOH A 79 779 90 HOH HOH . F 6 HOH A 80 780 78 HOH HOH . F 6 HOH A 81 781 24 HOH HOH . F 6 HOH A 82 782 86 HOH HOH . F 6 HOH A 83 783 70 HOH HOH . F 6 HOH A 84 784 77 HOH HOH . F 6 HOH A 85 785 66 HOH HOH . F 6 HOH A 86 786 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 4 -47.615 -10.087 -25.509 1 38.46 ? N1 EPE 603 A 1 HETATM 2 C C2 EPE . . . D 4 -47.395 -10.266 -24.074 1 42.81 ? C2 EPE 603 A 1 HETATM 3 C C3 EPE . . . D 4 -46.091 -9.661 -23.588 1 48.95 ? C3 EPE 603 A 1 HETATM 4 N N4 EPE . . . D 4 -44.977 -10.171 -24.383 1 48.85 ? N4 EPE 603 A 1 HETATM 5 C C5 EPE . . . D 4 -45.211 -9.77 -25.767 1 45.46 ? C5 EPE 603 A 1 HETATM 6 C C6 EPE . . . D 4 -46.438 -10.511 -26.257 1 43.31 ? C6 EPE 603 A 1 HETATM 7 C C7 EPE . . . D 4 -43.731 -9.576 -23.898 1 46.82 ? C7 EPE 603 A 1 HETATM 8 C C8 EPE . . . D 4 -43.342 -10.192 -22.564 1 45.97 ? C8 EPE 603 A 1 HETATM 9 O O8 EPE . . . D 4 -42.883 -11.526 -22.776 1 43.35 ? O8 EPE 603 A 1 HETATM 10 C C9 EPE . . . D 4 -48.695 -10.999 -25.869 1 40.97 ? C9 EPE 603 A 1 HETATM 11 C C10 EPE . . . D 4 -49.581 -10.441 -26.965 1 37.91 ? C10 EPE 603 A 1 HETATM 12 S S EPE . . . D 4 -50.257 -9.014 -26.521 1 43.04 ? S EPE 603 A 1 HETATM 13 O O1S EPE . . . D 4 -50.533 -8.244 -27.717 1 40.08 ? O1S EPE 603 A 1 HETATM 14 O O2S EPE . . . D 4 -51.514 -9.225 -25.827 1 35.6 ? O2S EPE 603 A 1 HETATM 15 O O3S EPE . . . D 4 -49.328 -8.263 -25.693 1 37.25 ? O3S EPE 603 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #