data_7PLR # _model_server_result.job_id JK_21nGqRkJEqvHorv2ssQ _model_server_result.datetime_utc '2024-11-28 08:06:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7plr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 7PLR # _exptl.entry_id 7PLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7PLR _cell.length_a 124.738 _cell.length_b 124.738 _cell.length_c 295.25 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,W 1 1 B,L,M,N,X 2 1 C,O,P,Q,R,Y 3 1 D,S,T,U,V,Z 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 AAA CYS 20 1_555 C SG CYS 21 DDD CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 21 BBB CYS 20 1_555 D SG CYS 21 GGG CYS 20 10_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc1 A NE2 HIS 35 AAA HIS 34 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A OD1 ASP 53 AAA ASP 52 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 A OD2 ASP 80 AAA ASP 79 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 A OD1 ASP 80 AAA ASP 79 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc5 A OD1 ASP 93 AAA ASP 92 1_555 J MN MN . AAA MN 206 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 A OD2 ASP 93 AAA ASP 92 1_555 J MN MN . AAA MN 206 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 A O TYR 94 AAA TYR 93 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 E O1 E4Z . AAA E4Z 201 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 E O2 E4Z . AAA E4Z 201 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 E O2 E4Z . AAA E4Z 201 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 E O3 E4Z . AAA E4Z 201 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc12 K MN MN . AAA MN 207 1_555 W O HOH . AAA HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc13 K MN MN . AAA MN 207 1_555 W O HOH . AAA HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc14 B NE2 HIS 35 BBB HIS 34 1_555 L MN MN . BBB MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc15 B OD1 ASP 53 BBB ASP 52 1_555 M MN MN . BBB MN 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc16 B OD2 ASP 80 BBB ASP 79 1_555 L MN MN . BBB MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc17 B OD1 ASP 80 BBB ASP 79 1_555 M MN MN . BBB MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc18 B OD1 ASP 93 BBB ASP 92 1_555 L MN MN . BBB MN 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc19 B OD2 ASP 93 BBB ASP 92 1_555 L MN MN . BBB MN 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc20 B O TYR 94 BBB TYR 93 1_555 L MN MN . BBB MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc21 M MN MN . BBB MN 202 1_555 X O HOH . BBB HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc22 C NE2 HIS 35 DDD HIS 34 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc23 C OD1 ASP 53 DDD ASP 52 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc24 C OD2 ASP 80 DDD ASP 79 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc25 C OD1 ASP 80 DDD ASP 79 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc26 C OD1 ASP 93 DDD ASP 92 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc27 C O TYR 94 DDD TYR 93 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc28 O O1 E4Z . DDD E4Z 201 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc29 O O2 E4Z . DDD E4Z 201 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc30 O O2 E4Z . DDD E4Z 201 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc31 O O3 E4Z . DDD E4Z 201 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc32 R MN MN . DDD MN 204 1_555 Y O HOH . DDD HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc33 R MN MN . DDD MN 204 1_555 Y O HOH . DDD HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc34 D NE2 HIS 35 GGG HIS 34 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc35 D OD1 ASP 53 GGG ASP 52 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc36 D OD2 ASP 80 GGG ASP 79 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc37 D OD1 ASP 80 GGG ASP 79 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc38 D OD1 ASP 93 GGG ASP 92 1_555 U MN MN . GGG MN 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc39 D O TYR 94 GGG TYR 93 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc40 S O1 E4Z . GGG E4Z 201 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc41 S O2 E4Z . GGG E4Z 201 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc42 S O2 E4Z . GGG E4Z 201 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc43 S O3 E4Z . GGG E4Z 201 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc44 V MN MN . GGG MN 204 1_555 Z O HOH . GGG HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc45 V MN MN . GGG MN 204 1_555 Z O HOH . GGG HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 191 n n C1 C2 GOL sing 192 n n C1 H11 GOL sing 193 n n C1 H12 GOL sing 194 n n O1 HO1 GOL sing 195 n n C2 O2 GOL sing 196 n n C2 C3 GOL sing 197 n n C2 H2 GOL sing 198 n n O2 HO2 GOL sing 199 n n C3 O3 GOL sing 200 n n C3 H31 GOL sing 201 n n C3 H32 GOL sing 202 n n O3 HO3 GOL sing 203 n n # _atom_sites.entry_id 7PLR _atom_sites.fract_transf_matrix[1][1] 0.008017 _atom_sites.fract_transf_matrix[1][2] 0.004629 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 E4Z AAA 1 201 201 E4Z LIG . F 3 FMT AAA 1 202 202 FMT FMT . G 4 GOL AAA 1 203 203 GOL GOL . H 3 FMT AAA 1 204 204 FMT FMT . I 5 MN AAA 1 205 8 MN MN . J 5 MN AAA 1 206 5 MN MN . K 5 MN AAA 1 207 6 MN MN . L 5 MN BBB 1 201 5 MN MN . M 5 MN BBB 1 202 6 MN MN . N 5 MN BBB 1 203 7 MN MN . O 2 E4Z DDD 1 201 201 E4Z LIG . P 3 FMT DDD 1 202 202 FMT FMT . Q 5 MN DDD 1 203 5 MN MN . R 5 MN DDD 1 204 6 MN MN . S 2 E4Z GGG 1 201 201 E4Z LIG . T 3 FMT GGG 1 202 202 FMT FMT . U 5 MN GGG 1 203 5 MN MN . V 5 MN GGG 1 204 6 MN MN . W 6 HOH AAA 1 301 86 HOH HOH . W 6 HOH AAA 2 302 19 HOH HOH . W 6 HOH AAA 3 303 14 HOH HOH . W 6 HOH AAA 4 304 20 HOH HOH . W 6 HOH AAA 5 305 105 HOH HOH . W 6 HOH AAA 6 306 116 HOH HOH . W 6 HOH AAA 7 307 106 HOH HOH . W 6 HOH AAA 8 308 93 HOH HOH . W 6 HOH AAA 9 309 66 HOH HOH . W 6 HOH AAA 10 310 36 HOH HOH . W 6 HOH AAA 11 311 49 HOH HOH . W 6 HOH AAA 12 312 12 HOH HOH . W 6 HOH AAA 13 313 30 HOH HOH . W 6 HOH AAA 14 314 43 HOH HOH . W 6 HOH AAA 15 315 11 HOH HOH . W 6 HOH AAA 16 316 33 HOH HOH . W 6 HOH AAA 17 317 117 HOH HOH . W 6 HOH AAA 18 318 31 HOH HOH . W 6 HOH AAA 19 319 34 HOH HOH . X 6 HOH BBB 1 301 58 HOH HOH . X 6 HOH BBB 2 302 44 HOH HOH . X 6 HOH BBB 3 303 98 HOH HOH . X 6 HOH BBB 4 304 57 HOH HOH . X 6 HOH BBB 5 305 62 HOH HOH . X 6 HOH BBB 6 306 39 HOH HOH . X 6 HOH BBB 7 307 35 HOH HOH . X 6 HOH BBB 8 308 80 HOH HOH . X 6 HOH BBB 9 309 77 HOH HOH . X 6 HOH BBB 10 310 26 HOH HOH . X 6 HOH BBB 11 311 113 HOH HOH . X 6 HOH BBB 12 312 27 HOH HOH . X 6 HOH BBB 13 313 78 HOH HOH . X 6 HOH BBB 14 314 119 HOH HOH . X 6 HOH BBB 15 315 28 HOH HOH . Y 6 HOH DDD 1 301 75 HOH HOH . Y 6 HOH DDD 2 302 120 HOH HOH . Y 6 HOH DDD 3 303 41 HOH HOH . Y 6 HOH DDD 4 304 70 HOH HOH . Y 6 HOH DDD 5 305 17 HOH HOH . Y 6 HOH DDD 6 306 110 HOH HOH . Y 6 HOH DDD 7 307 107 HOH HOH . Y 6 HOH DDD 8 308 108 HOH HOH . Y 6 HOH DDD 9 309 42 HOH HOH . Y 6 HOH DDD 10 310 40 HOH HOH . Y 6 HOH DDD 11 311 100 HOH HOH . Y 6 HOH DDD 12 312 10 HOH HOH . Y 6 HOH DDD 13 313 37 HOH HOH . Y 6 HOH DDD 14 314 114 HOH HOH . Y 6 HOH DDD 15 315 6 HOH HOH . Y 6 HOH DDD 16 316 88 HOH HOH . Y 6 HOH DDD 17 317 115 HOH HOH . Y 6 HOH DDD 18 318 1 HOH HOH . Y 6 HOH DDD 19 319 9 HOH HOH . Y 6 HOH DDD 20 320 94 HOH HOH . Y 6 HOH DDD 21 321 109 HOH HOH . Y 6 HOH DDD 22 322 7 HOH HOH . Z 6 HOH GGG 1 301 54 HOH HOH . Z 6 HOH GGG 2 302 21 HOH HOH . Z 6 HOH GGG 3 303 45 HOH HOH . Z 6 HOH GGG 4 304 102 HOH HOH . Z 6 HOH GGG 5 305 96 HOH HOH . Z 6 HOH GGG 6 306 67 HOH HOH . Z 6 HOH GGG 7 307 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -51.927 36.599 2.59 1 73.22 0 C1 GOL 203 AAA 1 HETATM 2 O O1 GOL . . . G 4 -51.558 35.225 2.515 1 74.02 0 O1 GOL 203 AAA 1 HETATM 3 C C2 GOL . . . G 4 -50.896 37.406 3.355 1 73.48 0 C2 GOL 203 AAA 1 HETATM 4 O O2 GOL . . . G 4 -50.886 38.753 2.886 1 72.28 0 O2 GOL 203 AAA 1 HETATM 5 C C3 GOL . . . G 4 -51.126 37.395 4.852 1 73.64 0 C3 GOL 203 AAA 1 HETATM 6 O O3 GOL . . . G 4 -50.12 38.125 5.55 1 72.08 0 O3 GOL 203 AAA 1 HETATM 7 H H11 GOL . . . G 4 -52.802 36.678 3.041 1 73.47 0 H11 GOL 203 AAA 1 HETATM 8 H H12 GOL . . . G 4 -52.013 36.965 1.676 1 73.47 0 H12 GOL 203 AAA 1 HETATM 9 H HO1 GOL . . . G 4 -52.179 34.822 2.055 0 75.1 0 HO1 GOL 203 AAA 1 HETATM 10 H H2 GOL . . . G 4 -50.01 37.009 3.181 1 73.16 0 H2 GOL 203 AAA 1 HETATM 11 H HO2 GOL . . . G 4 -50.989 39.263 3.519 0 73.17 0 HO2 GOL 203 AAA 1 HETATM 12 H H31 GOL . . . G 4 -51.13 36.46 5.172 1 73.17 0 H31 GOL 203 AAA 1 HETATM 13 H H32 GOL . . . G 4 -52.011 37.791 5.047 1 73.22 0 H32 GOL 203 AAA 1 HETATM 14 H HO3 GOL . . . G 4 -50.48 38.803 5.906 1 72.45 0 HO3 GOL 203 AAA 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #