data_7PLR
#
_model_server_result.job_id            x-4vx9JwEBGjN3MBKfGrpg 
_model_server_result.datetime_utc      '2024-11-24 14:26:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7plr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":204}' 
#
_entry.id    7PLR 
#
_exptl.entry_id    7PLR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7PLR 
_cell.length_a            124.738 
_cell.length_b            124.738 
_cell.length_c            295.25 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PLR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,W 1 1 
B,L,M,N,X 2 1 
C,O,P,Q,R,Y 3 1 
D,S,T,U,V,Z 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 Q N N 
? 5 R N N 
? 5 U N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 AAA CYS 20 1_555 C SG CYS 21 DDD CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 B SG CYS 21 BBB CYS 20 1_555 D SG CYS 21 GGG CYS 20 10_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc1 A NE2 HIS 35 AAA HIS 34 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 A OD1 ASP 53 AAA ASP 52 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc3 A OD2 ASP 80 AAA ASP 79 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc4 A OD1 ASP 80 AAA ASP 79 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc5 A OD1 ASP 93 AAA ASP 92 1_555 J MN MN . AAA MN 206 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc6 A OD2 ASP 93 AAA ASP 92 1_555 J MN MN . AAA MN 206 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc7 A O TYR 94 AAA TYR 93 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc8 E O1 E4Z . AAA E4Z 201 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc9 E O2 E4Z . AAA E4Z 201 1_555 J MN MN . AAA MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc10 E O2 E4Z . AAA E4Z 201 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc11 E O3 E4Z . AAA E4Z 201 1_555 K MN MN . AAA MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
metalc ? metalc12 K MN MN . AAA MN 207 1_555 W O HOH . AAA HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc13 K MN MN . AAA MN 207 1_555 W O HOH . AAA HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc14 B NE2 HIS 35 BBB HIS 34 1_555 L MN MN . BBB MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc15 B OD1 ASP 53 BBB ASP 52 1_555 M MN MN . BBB MN 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc16 B OD2 ASP 80 BBB ASP 79 1_555 L MN MN . BBB MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc17 B OD1 ASP 80 BBB ASP 79 1_555 M MN MN . BBB MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc18 B OD1 ASP 93 BBB ASP 92 1_555 L MN MN . BBB MN 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc19 B OD2 ASP 93 BBB ASP 92 1_555 L MN MN . BBB MN 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc20 B O TYR 94 BBB TYR 93 1_555 L MN MN . BBB MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc21 M MN MN . BBB MN 202 1_555 X O HOH . BBB HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc22 C NE2 HIS 35 DDD HIS 34 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc23 C OD1 ASP 53 DDD ASP 52 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc24 C OD2 ASP 80 DDD ASP 79 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc25 C OD1 ASP 80 DDD ASP 79 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc26 C OD1 ASP 93 DDD ASP 92 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc27 C O TYR 94 DDD TYR 93 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc28 O O1 E4Z . DDD E4Z 201 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc29 O O2 E4Z . DDD E4Z 201 1_555 Q MN MN . DDD MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc30 O O2 E4Z . DDD E4Z 201 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc31 O O3 E4Z . DDD E4Z 201 1_555 R MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc32 R MN MN . DDD MN 204 1_555 Y O HOH . DDD HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc33 R MN MN . DDD MN 204 1_555 Y O HOH . DDD HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc34 D NE2 HIS 35 GGG HIS 34 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc35 D OD1 ASP 53 GGG ASP 52 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc36 D OD2 ASP 80 GGG ASP 79 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc37 D OD1 ASP 80 GGG ASP 79 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc38 D OD1 ASP 93 GGG ASP 92 1_555 U MN MN . GGG MN 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc39 D O TYR 94 GGG TYR 93 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc40 S O1 E4Z . GGG E4Z 201 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc41 S O2 E4Z . GGG E4Z 201 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc42 S O2 E4Z . GGG E4Z 201 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc43 S O3 E4Z . GGG E4Z 201 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc44 V MN MN . GGG MN 204 1_555 Z O HOH . GGG HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc45 V MN MN . GGG MN 204 1_555 Z O HOH . GGG HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7PLR 
_atom_sites.fract_transf_matrix[1][1]    0.008017 
_atom_sites.fract_transf_matrix[1][2]    0.004629 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 E4Z AAA 1 201 201 E4Z LIG . 
F 3 FMT AAA 1 202 202 FMT FMT . 
G 4 GOL AAA 1 203 203 GOL GOL . 
H 3 FMT AAA 1 204 204 FMT FMT . 
I 5 MN AAA 1 205 8 MN MN . 
J 5 MN AAA 1 206 5 MN MN . 
K 5 MN AAA 1 207 6 MN MN . 
L 5 MN BBB 1 201 5 MN MN . 
M 5 MN BBB 1 202 6 MN MN . 
N 5 MN BBB 1 203 7 MN MN . 
O 2 E4Z DDD 1 201 201 E4Z LIG . 
P 3 FMT DDD 1 202 202 FMT FMT . 
Q 5 MN DDD 1 203 5 MN MN . 
R 5 MN DDD 1 204 6 MN MN . 
S 2 E4Z GGG 1 201 201 E4Z LIG . 
T 3 FMT GGG 1 202 202 FMT FMT . 
U 5 MN GGG 1 203 5 MN MN . 
V 5 MN GGG 1 204 6 MN MN . 
W 6 HOH AAA 1 301 86 HOH HOH . 
W 6 HOH AAA 2 302 19 HOH HOH . 
W 6 HOH AAA 3 303 14 HOH HOH . 
W 6 HOH AAA 4 304 20 HOH HOH . 
W 6 HOH AAA 5 305 105 HOH HOH . 
W 6 HOH AAA 6 306 116 HOH HOH . 
W 6 HOH AAA 7 307 106 HOH HOH . 
W 6 HOH AAA 8 308 93 HOH HOH . 
W 6 HOH AAA 9 309 66 HOH HOH . 
W 6 HOH AAA 10 310 36 HOH HOH . 
W 6 HOH AAA 11 311 49 HOH HOH . 
W 6 HOH AAA 12 312 12 HOH HOH . 
W 6 HOH AAA 13 313 30 HOH HOH . 
W 6 HOH AAA 14 314 43 HOH HOH . 
W 6 HOH AAA 15 315 11 HOH HOH . 
W 6 HOH AAA 16 316 33 HOH HOH . 
W 6 HOH AAA 17 317 117 HOH HOH . 
W 6 HOH AAA 18 318 31 HOH HOH . 
W 6 HOH AAA 19 319 34 HOH HOH . 
X 6 HOH BBB 1 301 58 HOH HOH . 
X 6 HOH BBB 2 302 44 HOH HOH . 
X 6 HOH BBB 3 303 98 HOH HOH . 
X 6 HOH BBB 4 304 57 HOH HOH . 
X 6 HOH BBB 5 305 62 HOH HOH . 
X 6 HOH BBB 6 306 39 HOH HOH . 
X 6 HOH BBB 7 307 35 HOH HOH . 
X 6 HOH BBB 8 308 80 HOH HOH . 
X 6 HOH BBB 9 309 77 HOH HOH . 
X 6 HOH BBB 10 310 26 HOH HOH . 
X 6 HOH BBB 11 311 113 HOH HOH . 
X 6 HOH BBB 12 312 27 HOH HOH . 
X 6 HOH BBB 13 313 78 HOH HOH . 
X 6 HOH BBB 14 314 119 HOH HOH . 
X 6 HOH BBB 15 315 28 HOH HOH . 
Y 6 HOH DDD 1 301 75 HOH HOH . 
Y 6 HOH DDD 2 302 120 HOH HOH . 
Y 6 HOH DDD 3 303 41 HOH HOH . 
Y 6 HOH DDD 4 304 70 HOH HOH . 
Y 6 HOH DDD 5 305 17 HOH HOH . 
Y 6 HOH DDD 6 306 110 HOH HOH . 
Y 6 HOH DDD 7 307 107 HOH HOH . 
Y 6 HOH DDD 8 308 108 HOH HOH . 
Y 6 HOH DDD 9 309 42 HOH HOH . 
Y 6 HOH DDD 10 310 40 HOH HOH . 
Y 6 HOH DDD 11 311 100 HOH HOH . 
Y 6 HOH DDD 12 312 10 HOH HOH . 
Y 6 HOH DDD 13 313 37 HOH HOH . 
Y 6 HOH DDD 14 314 114 HOH HOH . 
Y 6 HOH DDD 15 315 6 HOH HOH . 
Y 6 HOH DDD 16 316 88 HOH HOH . 
Y 6 HOH DDD 17 317 115 HOH HOH . 
Y 6 HOH DDD 18 318 1 HOH HOH . 
Y 6 HOH DDD 19 319 9 HOH HOH . 
Y 6 HOH DDD 20 320 94 HOH HOH . 
Y 6 HOH DDD 21 321 109 HOH HOH . 
Y 6 HOH DDD 22 322 7 HOH HOH . 
Z 6 HOH GGG 1 301 54 HOH HOH . 
Z 6 HOH GGG 2 302 21 HOH HOH . 
Z 6 HOH GGG 3 303 45 HOH HOH . 
Z 6 HOH GGG 4 304 102 HOH HOH . 
Z 6 HOH GGG 5 305 96 HOH HOH . 
Z 6 HOH GGG 6 306 67 HOH HOH . 
Z 6 HOH GGG 7 307 95 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         R 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -81.539 
_atom_site.Cartn_y               29.65 
_atom_site.Cartn_z               -17.04 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        74.75 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           204 
_atom_site.auth_asym_id          DDD 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#