data_7PLU # _model_server_result.job_id QynbiFgz-t9LcdXXw62Z-w _model_server_result.datetime_utc '2024-11-04 22:54:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7plu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 7PLU # _exptl.entry_id 7PLU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PLU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 M N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 74 C GLU 72 1_555 B N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C HIC 75 C HIC 73 1_555 B N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C C TRP 1 H TRP 1 1_555 C N EEP 2 H EEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 C CD1 TRP 1 H TRP 1 1_555 C SG CYS 5 H CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? covale ? covale5 C N TRP 1 H TRP 1 1_555 C C ALA 7 H ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 C C EEP 2 H EEP 2 1_555 C N ALA 3 H ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale7 C C ALA 3 H ALA 3 1_555 C N DTH 4 H DTH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 C C DTH 4 H DTH 4 1_555 C N CYS 5 H CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 C C CYS 5 H CYS 5 1_555 C N HYP 6 H HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 C C HYP 6 H HYP 6 1_555 C N ALA 7 H ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 F C GLU 74 F GLU 72 1_555 F N HIC 75 F HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 F C HIC 75 F HIC 73 1_555 F N GLY 76 F GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 G C TRP 1 I TRP 1 1_555 G N EEP 2 I EEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale14 G CD1 TRP 1 I TRP 1 1_555 G SG CYS 5 I CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? covale ? covale15 G N TRP 1 I TRP 1 1_555 G C ALA 7 I ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale16 G C EEP 2 I EEP 2 1_555 G N ALA 3 I ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale17 G C ALA 3 I ALA 3 1_555 G N DTH 4 I DTH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale18 G C DTH 4 I DTH 4 1_555 G N CYS 5 I CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 G C CYS 5 I CYS 5 1_555 G N HYP 6 I HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale20 G C HYP 6 I HYP 6 1_555 G N ALA 7 I ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale21 I C GLU 74 G GLU 72 1_555 I N HIC 75 G HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 I C HIC 75 G HIC 73 1_555 I N GLY 76 G GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 J C TRP 1 J TRP 1 1_555 J N EEP 2 J EEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale24 J CD1 TRP 1 J TRP 1 1_555 J SG CYS 5 J CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? covale ? covale25 J N TRP 1 J TRP 1 1_555 J C ALA 7 J ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale26 J C EEP 2 J EEP 2 1_555 J N ALA 3 J ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale27 J C ALA 3 J ALA 3 1_555 J N DTH 4 J DTH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale28 J C DTH 4 J DTH 4 1_555 J N CYS 5 J CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale29 J C CYS 5 J CYS 5 1_555 J N HYP 6 J HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale30 J C HYP 6 J HYP 6 1_555 J N ALA 7 J ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? metalc ? metalc1 K O2B ADP . C ADP 401 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 M O2B ADP . F ADP 401 1_555 N MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 O O2B ADP . G ADP 401 1_555 P MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 O O3B ADP . G ADP 401 1_555 P MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PLU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 ADP C 1 401 376 ADP ADP . L 6 MG C 1 402 377 MG MG . M 5 ADP F 1 401 376 ADP ADP . N 6 MG F 1 402 377 MG MG . O 5 ADP G 1 401 376 ADP ADP . P 6 MG G 1 402 377 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . O 5 150.708 172.975 194.625 1 35.28 ? PB ADP 401 G 1 HETATM 2 O O1B ADP . . . O 5 150.56 174.076 193.608 1 35.28 ? O1B ADP 401 G 1 HETATM 3 O O2B ADP . . . O 5 149.474 172.701 195.447 1 35.28 ? O2B ADP 401 G 1 HETATM 4 O O3B ADP . . . O 5 151.975 173.073 195.431 1 35.28 ? O3B ADP 401 G 1 HETATM 5 P PA ADP . . . O 5 149.739 170.591 193.46 1 35.28 ? PA ADP 401 G 1 HETATM 6 O O1A ADP . . . O 5 148.843 171.161 192.391 1 35.28 ? O1A ADP 401 G 1 HETATM 7 O O2A ADP . . . O 5 149.165 170.1 194.764 1 35.28 ? O2A ADP 401 G 1 HETATM 8 O O3A ADP . . . O 5 150.921 171.643 193.749 1 35.28 ? O3A ADP 401 G 1 HETATM 9 O O5' ADP . . . O 5 150.575 169.375 192.831 1 35.28 ? O5' ADP 401 G 1 HETATM 10 C C5' ADP . . . O 5 150.972 169.389 191.465 1 35.28 ? C5' ADP 401 G 1 HETATM 11 C C4' ADP . . . O 5 152.135 168.421 191.296 1 35.28 ? C4' ADP 401 G 1 HETATM 12 O O4' ADP . . . O 5 151.705 167.074 191.536 1 35.28 ? O4' ADP 401 G 1 HETATM 13 C C3' ADP . . . O 5 152.626 168.398 189.867 1 35.28 ? C3' ADP 401 G 1 HETATM 14 O O3' ADP . . . O 5 153.975 167.936 189.803 1 35.28 ? O3' ADP 401 G 1 HETATM 15 C C2' ADP . . . O 5 151.725 167.392 189.203 1 35.28 ? C2' ADP 401 G 1 HETATM 16 O O2' ADP . . . O 5 152.425 166.751 188.136 1 35.28 ? O2' ADP 401 G 1 HETATM 17 C C1' ADP . . . O 5 151.457 166.385 190.303 1 35.28 ? C1' ADP 401 G 1 HETATM 18 N N9 ADP . . . O 5 150.062 165.9 190.202 1 35.28 ? N9 ADP 401 G 1 HETATM 19 C C8 ADP . . . O 5 148.96 166.654 190.048 1 35.28 ? C8 ADP 401 G 1 HETATM 20 N N7 ADP . . . O 5 147.845 165.882 189.995 1 35.28 ? N7 ADP 401 G 1 HETATM 21 C C5 ADP . . . O 5 148.235 164.602 190.122 1 35.28 ? C5 ADP 401 G 1 HETATM 22 C C6 ADP . . . O 5 147.572 163.279 190.151 1 35.28 ? C6 ADP 401 G 1 HETATM 23 N N6 ADP . . . O 5 146.228 163.17 190.03 1 35.28 ? N6 ADP 401 G 1 HETATM 24 N N1 ADP . . . O 5 148.35 162.186 190.303 1 35.28 ? N1 ADP 401 G 1 HETATM 25 C C2 ADP . . . O 5 149.685 162.281 190.425 1 35.28 ? C2 ADP 401 G 1 HETATM 26 N N3 ADP . . . O 5 150.352 163.446 190.407 1 35.28 ? N3 ADP 401 G 1 HETATM 27 C C4 ADP . . . O 5 149.695 164.622 190.268 1 35.28 ? C4 ADP 401 G 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #