data_7PM2 # _model_server_result.job_id c_RB8HC2FhSFQOWYnAwprQ _model_server_result.datetime_utc '2024-11-12 21:12:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7PM2 # _exptl.entry_id 7PM2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PM2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 D O2B ADP . C ADP 401 1_555 F MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc2 D O3B ADP . C ADP 401 1_555 F MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 E O3 PO4 . C PO4 402 1_555 F MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PM2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ADP C 1 401 401 ADP ADP . E 5 PO4 C 1 402 402 PO4 PO4 . F 6 MG C 1 403 403 MG MG . G 7 9UE C 1 404 404 9UE 9UE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 4 134.906 200.906 146.488 1 72.13 ? PB ADP 401 C 1 HETATM 2 O O1B ADP . . . D 4 134.358 199.826 145.591 1 72.13 ? O1B ADP 401 C 1 HETATM 3 O O2B ADP . . . D 4 136.206 200.569 147.171 1 72.13 ? O2B ADP 401 C 1 HETATM 4 O O3B ADP . . . D 4 133.876 201.535 147.388 1 72.13 ? O3B ADP 401 C 1 HETATM 5 P PA ADP . . . D 4 136.13 203.35 145.983 1 72.13 ? PA ADP 401 C 1 HETATM 6 O O1A ADP . . . D 4 137.553 203.215 145.505 1 72.13 ? O1A ADP 401 C 1 HETATM 7 O O2A ADP . . . D 4 135.856 203.523 147.454 1 72.13 ? O2A ADP 401 C 1 HETATM 8 O O3A ADP . . . D 4 135.285 202.088 145.469 1 72.13 ? O3A ADP 401 C 1 HETATM 9 O O5' ADP . . . D 4 135.42 204.557 145.202 1 72.13 ? O5' ADP 401 C 1 HETATM 10 C C5' ADP . . . D 4 135.39 204.598 143.78 1 72.13 ? C5' ADP 401 C 1 HETATM 11 C C4' ADP . . . D 4 134.995 206.011 143.386 1 72.13 ? C4' ADP 401 C 1 HETATM 12 O O4' ADP . . . D 4 136.115 206.862 143.637 1 72.13 ? O4' ADP 401 C 1 HETATM 13 C C3' ADP . . . D 4 134.683 206.172 141.911 1 72.13 ? C3' ADP 401 C 1 HETATM 14 O O3' ADP . . . D 4 133.6 207.089 141.765 1 72.13 ? O3' ADP 401 C 1 HETATM 15 C C2' ADP . . . D 4 135.94 206.776 141.345 1 72.13 ? C2' ADP 401 C 1 HETATM 16 O O2' ADP . . . D 4 135.652 207.553 140.185 1 72.13 ? O2' ADP 401 C 1 HETATM 17 C C1' ADP . . . D 4 136.336 207.676 142.491 1 72.13 ? C1' ADP 401 C 1 HETATM 18 N N9 ADP . . . D 4 137.762 208.041 142.377 1 72.13 ? N9 ADP 401 C 1 HETATM 19 C C8 ADP . . . D 4 138.767 207.199 142.087 1 72.13 ? C8 ADP 401 C 1 HETATM 20 N N7 ADP . . . D 4 139.952 207.857 142.047 1 72.13 ? N7 ADP 401 C 1 HETATM 21 C C5 ADP . . . D 4 139.7 209.151 142.309 1 72.13 ? C5 ADP 401 C 1 HETATM 22 C C6 ADP . . . D 4 140.5 210.388 142.423 1 72.13 ? C6 ADP 401 C 1 HETATM 23 N N6 ADP . . . D 4 141.841 210.37 142.242 1 72.13 ? N6 ADP 401 C 1 HETATM 24 N N1 ADP . . . D 4 139.848 211.531 142.712 1 72.13 ? N1 ADP 401 C 1 HETATM 25 C C2 ADP . . . D 4 138.517 211.559 142.893 1 72.13 ? C2 ADP 401 C 1 HETATM 26 N N3 ADP . . . D 4 137.729 210.477 142.805 1 72.13 ? N3 ADP 401 C 1 HETATM 27 C C4 ADP . . . D 4 138.253 209.268 142.515 1 72.13 ? C4 ADP 401 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #