data_7PM5
#
_model_server_result.job_id            yRrvYaMk-nJpZUCz7SVEGw 
_model_server_result.datetime_utc      '2024-11-12 21:14:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pm5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    7PM5 
#
_exptl.entry_id    7PM5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PM5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 D C TRP 1 H TRP 1 1_555 D N EEP 2 H EEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale4 D CD1 TRP 1 H TRP 1 1_555 D SG CYS 5 H CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? 
covale ? covale5 D N TRP 1 H TRP 1 1_555 D C ALA 7 H ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale6 D C EEP 2 H EEP 2 1_555 D N ALA 3 H ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale7 D C ALA 3 H ALA 3 1_555 D N DTH 4 H DTH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 D C DTH 4 H DTH 4 1_555 D N CYS 5 H CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 D C CYS 5 H CYS 5 1_555 D N HYP 6 H HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale10 D C HYP 6 H HYP 6 1_555 D N ALA 7 H ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
metalc ? metalc1 B OG1 THR 170 A THR 170 1_555 E MG MG . A MG 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc2 E MG MG . A MG 1901 1_555 F O1B ADP . A ADP 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc3 G O2B ADP . C ADP 401 1_555 H MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7PM5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 MG A 1 1901 793 MG MG . 
F 6 ADP A 1 1902 794 ADP ADP . 
G 6 ADP C 1 401 376 ADP ADP . 
H 5 MG C 1 402 377 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 6 130.354 192.894 139.684 1 77.27 ? PB ADP 401 C 1 
HETATM 2 O O1B ADP . . . G 6 130.568 192.025 138.475 1 77.27 ? O1B ADP 401 C 1 
HETATM 3 O O2B ADP . . . G 6 131.381 192.722 140.776 1 77.27 ? O2B ADP 401 C 1 
HETATM 4 O O3B ADP . . . G 6 128.928 192.941 140.164 1 77.27 ? O3B ADP 401 C 1 
HETATM 5 P PA ADP . . . G 6 132.136 194.886 138.94 1 77.27 ? PA ADP 401 C 1 
HETATM 6 O O1A ADP . . . G 6 132.832 193.995 137.949 1 77.27 ? O1A ADP 401 C 1 
HETATM 7 O O2A ADP . . . G 6 132.738 195.11 140.301 1 77.27 ? O2A ADP 401 C 1 
HETATM 8 O O3A ADP . . . G 6 130.629 194.37 139.125 1 77.27 ? O3A ADP 401 C 1 
HETATM 9 O O5' ADP . . . G 6 131.906 196.314 138.25 1 77.27 ? O5' ADP 401 C 1 
HETATM 10 C C5' ADP . . . G 6 131.472 196.372 136.896 1 77.27 ? C5' ADP 401 C 1 
HETATM 11 C C4' ADP . . . G 6 130.641 197.625 136.705 1 77.27 ? C4' ADP 401 C 1 
HETATM 12 O O4' ADP . . . G 6 131.421 198.756 137.093 1 77.27 ? O4' ADP 401 C 1 
HETATM 13 C C3' ADP . . . G 6 130.281 197.865 135.256 1 77.27 ? C3' ADP 401 C 1 
HETATM 14 O O3' ADP . . . G 6 129.122 198.692 135.164 1 77.27 ? O3' ADP 401 C 1 
HETATM 15 C C2' ADP . . . G 6 131.482 198.615 134.749 1 77.27 ? C2' ADP 401 C 1 
HETATM 16 O O2' ADP . . . G 6 131.103 199.442 133.651 1 77.27 ? O2' ADP 401 C 1 
HETATM 17 C C1' ADP . . . G 6 131.846 199.479 135.936 1 77.27 ? C1' ADP 401 C 1 
HETATM 18 N N9 ADP . . . G 6 133.307 199.706 135.969 1 77.27 ? N9 ADP 401 C 1 
HETATM 19 C C8 ADP . . . G 6 134.258 198.761 135.897 1 77.27 ? C8 ADP 401 C 1 
HETATM 20 N N7 ADP . . . G 6 135.497 199.313 135.948 1 77.27 ? N7 ADP 401 C 1 
HETATM 21 C C5 ADP . . . G 6 135.34 200.643 136.052 1 77.27 ? C5 ADP 401 C 1 
HETATM 22 C C6 ADP . . . G 6 136.23 201.819 136.151 1 77.27 ? C6 ADP 401 C 1 
HETATM 23 N N6 ADP . . . G 6 137.575 201.68 136.148 1 77.27 ? N6 ADP 401 C 1 
HETATM 24 N N1 ADP . . . G 6 135.656 203.036 136.244 1 77.27 ? N1 ADP 401 C 1 
HETATM 25 C C2 ADP . . . G 6 134.322 203.19 136.247 1 77.27 ? C2 ADP 401 C 1 
HETATM 26 N N3 ADP . . . G 6 133.455 202.169 136.161 1 77.27 ? N3 ADP 401 C 1 
HETATM 27 C C4 ADP . . . G 6 133.895 200.896 136.06 1 77.27 ? C4 ADP 401 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#