data_7PML # _model_server_result.job_id hAmYb4Qb0ZKsS2bskZu1Pg _model_server_result.datetime_utc '2024-11-12 21:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 7PML # _exptl.entry_id 7PML _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PML _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PML _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 D C TRP 1 H TRP 1 1_555 D N EEP 2 H EEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 D CD1 TRP 1 H TRP 1 1_555 D SG CYS 5 H CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.731 ? covale ? covale5 D N TRP 1 H TRP 1 1_555 D C ALA 7 H ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale6 D C EEP 2 H EEP 2 1_555 D N ALA 3 H ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale7 D C ALA 3 H ALA 3 1_555 D N DTH 4 H DTH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 D C DTH 4 H DTH 4 1_555 D N CYS 5 H CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 D C CYS 5 H CYS 5 1_555 D N HYP 6 H HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 D C HYP 6 H HYP 6 1_555 D N ALA 7 H ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? metalc ? metalc1 E O3G ANP . A ANP 1901 1_555 F MG MG . A MG 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc2 E O2B ANP . A ANP 1901 1_555 F MG MG . A MG 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc3 E O1B ANP . A ANP 1901 1_555 G MG MG . A MG 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc4 E O1A ANP . A ANP 1901 1_555 G MG MG . A MG 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc5 E O3A ANP . A ANP 1901 1_555 G MG MG . A MG 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PML _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ANP A 1 1901 793 ANP ANP . F 6 MG A 1 1902 794 MG MG . G 6 MG A 1 1903 795 MG MG . H 7 ADP C 1 401 376 ADP ADP . I 6 MG C 1 402 377 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 7 135.289 201.125 145.306 1 42.69 ? PB ADP 401 C 1 HETATM 2 O O1B ADP . . . H 7 136.234 200.144 144.668 1 42.69 ? O1B ADP 401 C 1 HETATM 3 O O2B ADP . . . H 7 133.836 200.759 145.158 1 42.69 ? O2B ADP 401 C 1 HETATM 4 O O3B ADP . . . H 7 135.694 201.563 146.691 1 42.69 ? O3B ADP 401 C 1 HETATM 5 P PA ADP . . . H 7 136.896 203.102 144.148 1 42.69 ? PA ADP 401 C 1 HETATM 6 O O1A ADP . . . H 7 137.644 202.283 143.133 1 42.69 ? O1A ADP 401 C 1 HETATM 7 O O2A ADP . . . H 7 137.524 203.384 145.485 1 42.69 ? O2A ADP 401 C 1 HETATM 8 O O3A ADP . . . H 7 135.456 202.436 144.394 1 42.69 ? O3A ADP 401 C 1 HETATM 9 O O5' ADP . . . H 7 136.512 204.5 143.467 1 42.69 ? O5' ADP 401 C 1 HETATM 10 C C5' ADP . . . H 7 136.136 204.534 142.096 1 42.69 ? C5' ADP 401 C 1 HETATM 11 C C4' ADP . . . H 7 135.301 205.779 141.872 1 42.69 ? C4' ADP 401 C 1 HETATM 12 O O4' ADP . . . H 7 136.07 206.939 142.191 1 42.69 ? O4' ADP 401 C 1 HETATM 13 C C3' ADP . . . H 7 134.93 205.944 140.417 1 42.69 ? C3' ADP 401 C 1 HETATM 14 O O3' ADP . . . H 7 133.769 206.764 140.289 1 42.69 ? O3' ADP 401 C 1 HETATM 15 C C2' ADP . . . H 7 136.126 206.666 139.86 1 42.69 ? C2' ADP 401 C 1 HETATM 16 O O2' ADP . . . H 7 135.736 207.458 138.741 1 42.69 ? O2' ADP 401 C 1 HETATM 17 C C1' ADP . . . H 7 136.541 207.571 140.999 1 42.69 ? C1' ADP 401 C 1 HETATM 18 N N9 ADP . . . H 7 138.014 207.72 141.004 1 42.69 ? N9 ADP 401 C 1 HETATM 19 C C8 ADP . . . H 7 138.915 206.727 140.923 1 42.69 ? C8 ADP 401 C 1 HETATM 20 N N7 ADP . . . H 7 140.18 207.217 140.943 1 42.69 ? N7 ADP 401 C 1 HETATM 21 C C5 ADP . . . H 7 140.093 208.556 141.03 1 42.69 ? C5 ADP 401 C 1 HETATM 22 C C6 ADP . . . H 7 141.044 209.688 141.094 1 42.69 ? C6 ADP 401 C 1 HETATM 23 N N6 ADP . . . H 7 142.381 209.48 141.067 1 42.69 ? N6 ADP 401 C 1 HETATM 24 N N1 ADP . . . H 7 140.533 210.933 141.181 1 42.69 ? N1 ADP 401 C 1 HETATM 25 C C2 ADP . . . H 7 139.208 211.152 141.209 1 42.69 ? C2 ADP 401 C 1 HETATM 26 N N3 ADP . . . H 7 138.289 210.175 141.155 1 42.69 ? N3 ADP 401 C 1 HETATM 27 C C4 ADP . . . H 7 138.663 208.88 141.065 1 42.69 ? C4 ADP 401 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #