data_7PMT # _model_server_result.job_id fC_azpQNBnZ-HMftV4Etwg _model_server_result.datetime_utc '2025-01-16 03:11:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7PMT # _exptl.entry_id 7PMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PMT _cell.length_a 57.153 _cell.length_b 57.153 _cell.length_c 87.703 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 141 n n S C1 DMS sing 142 n n S C2 DMS sing 143 n n C1 H11 DMS sing 144 n n C1 H12 DMS sing 145 n n C1 H13 DMS sing 146 n n C2 H21 DMS sing 147 n n C2 H22 DMS sing 148 n n C2 H23 DMS sing 149 n n # _atom_sites.entry_id 7PMT _atom_sites.fract_transf_matrix[1][1] 0.017497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 201 DMS DMS . C 3 7UO A 1 202 201 7UO INH . D 4 HOH A 1 301 253 HOH HOH . D 4 HOH A 2 302 20 HOH HOH . D 4 HOH A 3 303 328 HOH HOH . D 4 HOH A 4 304 191 HOH HOH . D 4 HOH A 5 305 285 HOH HOH . D 4 HOH A 6 306 257 HOH HOH . D 4 HOH A 7 307 201 HOH HOH . D 4 HOH A 8 308 222 HOH HOH . D 4 HOH A 9 309 246 HOH HOH . D 4 HOH A 10 310 32 HOH HOH . D 4 HOH A 11 311 289 HOH HOH . D 4 HOH A 12 312 44 HOH HOH . D 4 HOH A 13 313 207 HOH HOH . D 4 HOH A 14 314 15 HOH HOH . D 4 HOH A 15 315 193 HOH HOH . D 4 HOH A 16 316 164 HOH HOH . D 4 HOH A 17 317 77 HOH HOH . D 4 HOH A 18 318 290 HOH HOH . D 4 HOH A 19 319 73 HOH HOH . D 4 HOH A 20 320 227 HOH HOH . D 4 HOH A 21 321 120 HOH HOH . D 4 HOH A 22 322 219 HOH HOH . D 4 HOH A 23 323 190 HOH HOH . D 4 HOH A 24 324 71 HOH HOH . D 4 HOH A 25 325 7 HOH HOH . D 4 HOH A 26 326 19 HOH HOH . D 4 HOH A 27 327 30 HOH HOH . D 4 HOH A 28 328 187 HOH HOH . D 4 HOH A 29 329 61 HOH HOH . D 4 HOH A 30 330 240 HOH HOH . D 4 HOH A 31 331 84 HOH HOH . D 4 HOH A 32 332 154 HOH HOH . D 4 HOH A 33 333 10 HOH HOH . D 4 HOH A 34 334 2 HOH HOH . D 4 HOH A 35 335 194 HOH HOH . D 4 HOH A 36 336 56 HOH HOH . D 4 HOH A 37 337 37 HOH HOH . D 4 HOH A 38 338 135 HOH HOH . D 4 HOH A 39 339 153 HOH HOH . D 4 HOH A 40 340 6 HOH HOH . D 4 HOH A 41 341 229 HOH HOH . D 4 HOH A 42 342 68 HOH HOH . D 4 HOH A 43 343 11 HOH HOH . D 4 HOH A 44 344 46 HOH HOH . D 4 HOH A 45 345 156 HOH HOH . D 4 HOH A 46 346 214 HOH HOH . D 4 HOH A 47 347 145 HOH HOH . D 4 HOH A 48 348 102 HOH HOH . D 4 HOH A 49 349 54 HOH HOH . D 4 HOH A 50 350 8 HOH HOH . D 4 HOH A 51 351 112 HOH HOH . D 4 HOH A 52 352 27 HOH HOH . D 4 HOH A 53 353 48 HOH HOH . D 4 HOH A 54 354 69 HOH HOH . D 4 HOH A 55 355 57 HOH HOH . D 4 HOH A 56 356 41 HOH HOH . D 4 HOH A 57 357 186 HOH HOH . D 4 HOH A 58 358 36 HOH HOH . D 4 HOH A 59 359 29 HOH HOH . D 4 HOH A 60 360 79 HOH HOH . D 4 HOH A 61 361 322 HOH HOH . D 4 HOH A 62 362 96 HOH HOH . D 4 HOH A 63 363 83 HOH HOH . D 4 HOH A 64 364 72 HOH HOH . D 4 HOH A 65 365 90 HOH HOH . D 4 HOH A 66 366 25 HOH HOH . D 4 HOH A 67 367 101 HOH HOH . D 4 HOH A 68 368 49 HOH HOH . D 4 HOH A 69 369 99 HOH HOH . D 4 HOH A 70 370 45 HOH HOH . D 4 HOH A 71 371 188 HOH HOH . D 4 HOH A 72 372 14 HOH HOH . D 4 HOH A 73 373 196 HOH HOH . D 4 HOH A 74 374 121 HOH HOH . D 4 HOH A 75 375 192 HOH HOH . D 4 HOH A 76 376 108 HOH HOH . D 4 HOH A 77 377 202 HOH HOH . D 4 HOH A 78 378 122 HOH HOH . D 4 HOH A 79 379 16 HOH HOH . D 4 HOH A 80 380 34 HOH HOH . D 4 HOH A 81 381 91 HOH HOH . D 4 HOH A 82 382 9 HOH HOH . D 4 HOH A 83 383 124 HOH HOH . D 4 HOH A 84 384 59 HOH HOH . D 4 HOH A 85 385 105 HOH HOH . D 4 HOH A 86 386 17 HOH HOH . D 4 HOH A 87 387 4 HOH HOH . D 4 HOH A 88 388 150 HOH HOH . D 4 HOH A 89 389 66 HOH HOH . D 4 HOH A 90 390 35 HOH HOH . D 4 HOH A 91 391 89 HOH HOH . D 4 HOH A 92 392 179 HOH HOH . D 4 HOH A 93 393 38 HOH HOH . D 4 HOH A 94 394 200 HOH HOH . D 4 HOH A 95 395 146 HOH HOH . D 4 HOH A 96 396 87 HOH HOH . D 4 HOH A 97 397 74 HOH HOH . D 4 HOH A 98 398 40 HOH HOH . D 4 HOH A 99 399 53 HOH HOH . D 4 HOH A 100 400 22 HOH HOH . D 4 HOH A 101 401 1 HOH HOH . D 4 HOH A 102 402 118 HOH HOH . D 4 HOH A 103 403 81 HOH HOH . D 4 HOH A 104 404 58 HOH HOH . D 4 HOH A 105 405 103 HOH HOH . D 4 HOH A 106 406 163 HOH HOH . D 4 HOH A 107 407 134 HOH HOH . D 4 HOH A 108 408 78 HOH HOH . D 4 HOH A 109 409 52 HOH HOH . D 4 HOH A 110 410 42 HOH HOH . D 4 HOH A 111 411 286 HOH HOH . D 4 HOH A 112 412 272 HOH HOH . D 4 HOH A 113 413 167 HOH HOH . D 4 HOH A 114 414 161 HOH HOH . D 4 HOH A 115 415 184 HOH HOH . D 4 HOH A 116 416 21 HOH HOH . D 4 HOH A 117 417 107 HOH HOH . D 4 HOH A 118 418 12 HOH HOH . D 4 HOH A 119 419 144 HOH HOH . D 4 HOH A 120 420 117 HOH HOH . D 4 HOH A 121 421 210 HOH HOH . D 4 HOH A 122 422 251 HOH HOH . D 4 HOH A 123 423 123 HOH HOH . D 4 HOH A 124 424 62 HOH HOH . D 4 HOH A 125 425 31 HOH HOH . D 4 HOH A 126 426 239 HOH HOH . D 4 HOH A 127 427 140 HOH HOH . D 4 HOH A 128 428 315 HOH HOH . D 4 HOH A 129 429 95 HOH HOH . D 4 HOH A 130 430 43 HOH HOH . D 4 HOH A 131 431 143 HOH HOH . D 4 HOH A 132 432 85 HOH HOH . D 4 HOH A 133 433 119 HOH HOH . D 4 HOH A 134 434 13 HOH HOH . D 4 HOH A 135 435 131 HOH HOH . D 4 HOH A 136 436 93 HOH HOH . D 4 HOH A 137 437 307 HOH HOH . D 4 HOH A 138 438 55 HOH HOH . D 4 HOH A 139 439 60 HOH HOH . D 4 HOH A 140 440 185 HOH HOH . D 4 HOH A 141 441 92 HOH HOH . D 4 HOH A 142 442 65 HOH HOH . D 4 HOH A 143 443 94 HOH HOH . D 4 HOH A 144 444 110 HOH HOH . D 4 HOH A 145 445 5 HOH HOH . D 4 HOH A 146 446 226 HOH HOH . D 4 HOH A 147 447 111 HOH HOH . D 4 HOH A 148 448 3 HOH HOH . D 4 HOH A 149 449 18 HOH HOH . D 4 HOH A 150 450 142 HOH HOH . D 4 HOH A 151 451 128 HOH HOH . D 4 HOH A 152 452 324 HOH HOH . D 4 HOH A 153 453 82 HOH HOH . D 4 HOH A 154 454 64 HOH HOH . D 4 HOH A 155 455 298 HOH HOH . D 4 HOH A 156 456 330 HOH HOH . D 4 HOH A 157 457 281 HOH HOH . D 4 HOH A 158 458 160 HOH HOH . D 4 HOH A 159 459 50 HOH HOH . D 4 HOH A 160 460 86 HOH HOH . D 4 HOH A 161 461 261 HOH HOH . D 4 HOH A 162 462 155 HOH HOH . D 4 HOH A 163 463 263 HOH HOH . D 4 HOH A 164 464 254 HOH HOH . D 4 HOH A 165 465 114 HOH HOH . D 4 HOH A 166 466 125 HOH HOH . D 4 HOH A 167 467 252 HOH HOH . D 4 HOH A 168 468 225 HOH HOH . D 4 HOH A 169 469 309 HOH HOH . D 4 HOH A 170 470 80 HOH HOH . D 4 HOH A 171 471 280 HOH HOH . D 4 HOH A 172 472 301 HOH HOH . D 4 HOH A 173 473 276 HOH HOH . D 4 HOH A 174 474 212 HOH HOH . D 4 HOH A 175 475 197 HOH HOH . D 4 HOH A 176 476 325 HOH HOH . D 4 HOH A 177 477 232 HOH HOH . D 4 HOH A 178 478 152 HOH HOH . D 4 HOH A 179 479 312 HOH HOH . D 4 HOH A 180 480 294 HOH HOH . D 4 HOH A 181 481 23 HOH HOH . D 4 HOH A 182 482 334 HOH HOH . D 4 HOH A 183 483 209 HOH HOH . D 4 HOH A 184 484 116 HOH HOH . D 4 HOH A 185 485 67 HOH HOH . D 4 HOH A 186 486 326 HOH HOH . D 4 HOH A 187 487 238 HOH HOH . D 4 HOH A 188 488 316 HOH HOH . D 4 HOH A 189 489 157 HOH HOH . D 4 HOH A 190 490 308 HOH HOH . D 4 HOH A 191 491 127 HOH HOH . D 4 HOH A 192 492 255 HOH HOH . D 4 HOH A 193 493 178 HOH HOH . D 4 HOH A 194 494 332 HOH HOH . D 4 HOH A 195 495 213 HOH HOH . D 4 HOH A 196 496 159 HOH HOH . D 4 HOH A 197 497 320 HOH HOH . D 4 HOH A 198 498 47 HOH HOH . D 4 HOH A 199 499 180 HOH HOH . D 4 HOH A 200 500 299 HOH HOH . D 4 HOH A 201 501 262 HOH HOH . D 4 HOH A 202 502 291 HOH HOH . D 4 HOH A 203 503 243 HOH HOH . D 4 HOH A 204 504 265 HOH HOH . D 4 HOH A 205 505 220 HOH HOH . D 4 HOH A 206 506 237 HOH HOH . D 4 HOH A 207 507 189 HOH HOH . D 4 HOH A 208 508 216 HOH HOH . D 4 HOH A 209 509 247 HOH HOH . D 4 HOH A 210 510 242 HOH HOH . D 4 HOH A 211 511 172 HOH HOH . D 4 HOH A 212 512 278 HOH HOH . D 4 HOH A 213 513 198 HOH HOH . D 4 HOH A 214 514 76 HOH HOH . D 4 HOH A 215 515 310 HOH HOH . D 4 HOH A 216 516 266 HOH HOH . D 4 HOH A 217 517 129 HOH HOH . D 4 HOH A 218 518 199 HOH HOH . D 4 HOH A 219 519 223 HOH HOH . D 4 HOH A 220 520 233 HOH HOH . D 4 HOH A 221 521 248 HOH HOH . D 4 HOH A 222 522 151 HOH HOH . D 4 HOH A 223 523 221 HOH HOH . D 4 HOH A 224 524 97 HOH HOH . D 4 HOH A 225 525 148 HOH HOH . D 4 HOH A 226 526 168 HOH HOH . D 4 HOH A 227 527 274 HOH HOH . D 4 HOH A 228 528 204 HOH HOH . D 4 HOH A 229 529 136 HOH HOH . D 4 HOH A 230 530 258 HOH HOH . D 4 HOH A 231 531 271 HOH HOH . D 4 HOH A 232 532 147 HOH HOH . D 4 HOH A 233 533 132 HOH HOH . D 4 HOH A 234 534 250 HOH HOH . D 4 HOH A 235 535 206 HOH HOH . D 4 HOH A 236 536 329 HOH HOH . D 4 HOH A 237 537 282 HOH HOH . D 4 HOH A 238 538 158 HOH HOH . D 4 HOH A 239 539 293 HOH HOH . D 4 HOH A 240 540 319 HOH HOH . D 4 HOH A 241 541 269 HOH HOH . D 4 HOH A 242 542 113 HOH HOH . D 4 HOH A 243 543 267 HOH HOH . D 4 HOH A 244 544 236 HOH HOH . D 4 HOH A 245 545 205 HOH HOH . D 4 HOH A 246 546 336 HOH HOH . D 4 HOH A 247 547 241 HOH HOH . D 4 HOH A 248 548 305 HOH HOH . D 4 HOH A 249 549 26 HOH HOH . D 4 HOH A 250 550 175 HOH HOH . D 4 HOH A 251 551 300 HOH HOH . D 4 HOH A 252 552 28 HOH HOH . D 4 HOH A 253 553 126 HOH HOH . D 4 HOH A 254 554 283 HOH HOH . D 4 HOH A 255 555 256 HOH HOH . D 4 HOH A 256 556 98 HOH HOH . D 4 HOH A 257 557 259 HOH HOH . D 4 HOH A 258 558 234 HOH HOH . D 4 HOH A 259 559 162 HOH HOH . D 4 HOH A 260 560 203 HOH HOH . D 4 HOH A 261 561 171 HOH HOH . D 4 HOH A 262 562 244 HOH HOH . D 4 HOH A 263 563 217 HOH HOH . D 4 HOH A 264 564 109 HOH HOH . D 4 HOH A 265 565 323 HOH HOH . D 4 HOH A 266 566 270 HOH HOH . D 4 HOH A 267 567 170 HOH HOH . D 4 HOH A 268 568 173 HOH HOH . D 4 HOH A 269 569 165 HOH HOH . D 4 HOH A 270 570 260 HOH HOH . D 4 HOH A 271 571 100 HOH HOH . D 4 HOH A 272 572 141 HOH HOH . D 4 HOH A 273 573 235 HOH HOH . D 4 HOH A 274 574 63 HOH HOH . D 4 HOH A 275 575 224 HOH HOH . D 4 HOH A 276 576 169 HOH HOH . D 4 HOH A 277 577 176 HOH HOH . D 4 HOH A 278 578 215 HOH HOH . D 4 HOH A 279 579 208 HOH HOH . D 4 HOH A 280 580 106 HOH HOH . D 4 HOH A 281 581 317 HOH HOH . D 4 HOH A 282 582 273 HOH HOH . D 4 HOH A 283 583 231 HOH HOH . D 4 HOH A 284 584 133 HOH HOH . D 4 HOH A 285 585 174 HOH HOH . D 4 HOH A 286 586 218 HOH HOH . D 4 HOH A 287 587 115 HOH HOH . D 4 HOH A 288 588 24 HOH HOH . D 4 HOH A 289 589 284 HOH HOH . D 4 HOH A 290 590 211 HOH HOH . D 4 HOH A 291 591 279 HOH HOH . D 4 HOH A 292 592 327 HOH HOH . D 4 HOH A 293 593 306 HOH HOH . D 4 HOH A 294 594 51 HOH HOH . D 4 HOH A 295 595 321 HOH HOH . D 4 HOH A 296 596 75 HOH HOH . D 4 HOH A 297 597 292 HOH HOH . D 4 HOH A 298 598 33 HOH HOH . D 4 HOH A 299 599 287 HOH HOH . D 4 HOH A 300 600 183 HOH HOH . D 4 HOH A 301 601 249 HOH HOH . D 4 HOH A 302 602 130 HOH HOH . D 4 HOH A 303 603 177 HOH HOH . D 4 HOH A 304 604 149 HOH HOH . D 4 HOH A 305 605 335 HOH HOH . D 4 HOH A 306 606 182 HOH HOH . D 4 HOH A 307 607 333 HOH HOH . D 4 HOH A 308 608 230 HOH HOH . D 4 HOH A 309 609 138 HOH HOH . D 4 HOH A 310 610 181 HOH HOH . D 4 HOH A 311 611 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 -21.171 7.128 3.003 1 27.02 ? S DMS 201 A 1 HETATM 2 O O DMS . . . B 2 -22.324 7.354 3.928 1 107.55 ? O DMS 201 A 1 HETATM 3 C C1 DMS . . . B 2 -20.993 5.349 2.695 1 35.06 ? C1 DMS 201 A 1 HETATM 4 C C2 DMS . . . B 2 -19.637 7.394 3.935 1 32.47 ? C2 DMS 201 A 1 HETATM 5 H H11 DMS . . . B 2 -20.56 5.197 1.741 1 42.09 ? H11 DMS 201 A 1 HETATM 6 H H12 DMS . . . B 2 -21.945 4.888 2.728 1 42.09 ? H12 DMS 201 A 1 HETATM 7 H H13 DMS . . . B 2 -20.369 4.923 3.438 1 42.09 ? H13 DMS 201 A 1 HETATM 8 H H21 DMS . . . B 2 -18.808 7.122 3.335 1 38.98 ? H21 DMS 201 A 1 HETATM 9 H H22 DMS . . . B 2 -19.648 6.8 4.811 1 38.98 ? H22 DMS 201 A 1 HETATM 10 H H23 DMS . . . B 2 -19.559 8.416 4.203 1 38.98 ? H23 DMS 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #