data_7PNA
#
_model_server_result.job_id            WF42mnvpgo7rsgDPlyDdCw 
_model_server_result.datetime_utc      '2024-10-24 04:33:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pna 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    7PNA 
#
_exptl.entry_id    7PNA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.93 
_cell.angle_gamma         90 
_cell.entry_id            7PNA 
_cell.length_a            51.466 
_cell.length_b            58.082 
_cell.length_c            61.198 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PNA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 278 A CYS 278 1_555 A SG CYS 319 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
covale ? covale1 A ND2 ASN 11 A ASN 11 1_555 F C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale2 A ND2 ASN 141 A ASN 141 1_555 H C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale3 A ND2 ASN 161 A ASN 161 1_555 I C1 NAG . A NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale4 A ND2 ASN 182 A ASN 182 1_555 J C1 NAG . A NAG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale5 A ND2 ASN 286 A ASN 286 1_555 G C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
metalc ? metalc1 A SG CYS 36 A CYS 36 1_555 C FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc2 A OE2 GLU 122 A GLU 122 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc3 A O GLY 123 A GLY 123 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 A OG SER 126 A SER 126 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc5 C O1A HEM . A HEM 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc6 D MG MG . A MG 403 1_555 L O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc7 D MG MG . A MG 403 1_555 L O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 360 n n 
C1 O1 NAG sing 361 n n 
C1 O5 NAG sing 362 n n 
C1 H1 NAG sing 363 n n 
C2 C3 NAG sing 364 n n 
C2 N2 NAG sing 365 n n 
C2 H2 NAG sing 366 n n 
C3 C4 NAG sing 367 n n 
C3 O3 NAG sing 368 n n 
C3 H3 NAG sing 369 n n 
C4 C5 NAG sing 370 n n 
C4 O4 NAG sing 371 n n 
C4 H4 NAG sing 372 n n 
C5 C6 NAG sing 373 n n 
C5 O5 NAG sing 374 n n 
C5 H5 NAG sing 375 n n 
C6 O6 NAG sing 376 n n 
C6 H61 NAG sing 377 n n 
C6 H62 NAG sing 378 n n 
C7 C8 NAG sing 379 n n 
C7 N2 NAG sing 380 n n 
C7 O7 NAG doub 381 n n 
C8 H81 NAG sing 382 n n 
C8 H82 NAG sing 383 n n 
C8 H83 NAG sing 384 n n 
N2 HN2 NAG sing 385 n n 
O1 HO1 NAG sing 386 n n 
O3 HO3 NAG sing 387 n n 
O4 HO4 NAG sing 388 n n 
O6 HO6 NAG sing 389 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7PNA 
_atom_sites.fract_transf_matrix[1][1]    0.01943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017217 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017381 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 401 1 PO4 PO4 . 
C 3 HEM A 1 402 1000 HEM HEM . 
D 4 MG A 1 403 1001 MG MG . 
E 5 CL A 1 404 1002 CL CL . 
F 6 NAG A 1 405 1003 NAG NAG . 
G 6 NAG A 1 406 1004 NAG NAG . 
H 6 NAG A 1 407 1005 NAG NAG . 
I 6 NAG A 1 408 1006 NAG NAG . 
J 6 NAG A 1 409 1007 NAG NAG . 
K 7 7UT A 1 410 1008 7UT MTX . 
L 8 HOH A 1 501 109 HOH HOH . 
L 8 HOH A 2 502 123 HOH HOH . 
L 8 HOH A 3 503 121 HOH HOH . 
L 8 HOH A 4 504 76 HOH HOH . 
L 8 HOH A 5 505 95 HOH HOH . 
L 8 HOH A 6 506 46 HOH HOH . 
L 8 HOH A 7 507 66 HOH HOH . 
L 8 HOH A 8 508 62 HOH HOH . 
L 8 HOH A 9 509 120 HOH HOH . 
L 8 HOH A 10 510 110 HOH HOH . 
L 8 HOH A 11 511 67 HOH HOH . 
L 8 HOH A 12 512 8 HOH HOH . 
L 8 HOH A 13 513 114 HOH HOH . 
L 8 HOH A 14 514 73 HOH HOH . 
L 8 HOH A 15 515 20 HOH HOH . 
L 8 HOH A 16 516 58 HOH HOH . 
L 8 HOH A 17 517 48 HOH HOH . 
L 8 HOH A 18 518 30 HOH HOH . 
L 8 HOH A 19 519 96 HOH HOH . 
L 8 HOH A 20 520 88 HOH HOH . 
L 8 HOH A 21 521 82 HOH HOH . 
L 8 HOH A 22 522 4 HOH HOH . 
L 8 HOH A 23 523 130 HOH HOH . 
L 8 HOH A 24 524 70 HOH HOH . 
L 8 HOH A 25 525 79 HOH HOH . 
L 8 HOH A 26 526 98 HOH HOH . 
L 8 HOH A 27 527 63 HOH HOH . 
L 8 HOH A 28 528 38 HOH HOH . 
L 8 HOH A 29 529 91 HOH HOH . 
L 8 HOH A 30 530 47 HOH HOH . 
L 8 HOH A 31 531 19 HOH HOH . 
L 8 HOH A 32 532 101 HOH HOH . 
L 8 HOH A 33 533 1 HOH HOH . 
L 8 HOH A 34 534 92 HOH HOH . 
L 8 HOH A 35 535 53 HOH HOH . 
L 8 HOH A 36 536 105 HOH HOH . 
L 8 HOH A 37 537 55 HOH HOH . 
L 8 HOH A 38 538 111 HOH HOH . 
L 8 HOH A 39 539 28 HOH HOH . 
L 8 HOH A 40 540 93 HOH HOH . 
L 8 HOH A 41 541 57 HOH HOH . 
L 8 HOH A 42 542 16 HOH HOH . 
L 8 HOH A 43 543 15 HOH HOH . 
L 8 HOH A 44 544 43 HOH HOH . 
L 8 HOH A 45 545 49 HOH HOH . 
L 8 HOH A 46 546 128 HOH HOH . 
L 8 HOH A 47 547 17 HOH HOH . 
L 8 HOH A 48 548 129 HOH HOH . 
L 8 HOH A 49 549 31 HOH HOH . 
L 8 HOH A 50 550 75 HOH HOH . 
L 8 HOH A 51 551 80 HOH HOH . 
L 8 HOH A 52 552 118 HOH HOH . 
L 8 HOH A 53 553 126 HOH HOH . 
L 8 HOH A 54 554 3 HOH HOH . 
L 8 HOH A 55 555 23 HOH HOH . 
L 8 HOH A 56 556 24 HOH HOH . 
L 8 HOH A 57 557 71 HOH HOH . 
L 8 HOH A 58 558 51 HOH HOH . 
L 8 HOH A 59 559 103 HOH HOH . 
L 8 HOH A 60 560 9 HOH HOH . 
L 8 HOH A 61 561 35 HOH HOH . 
L 8 HOH A 62 562 12 HOH HOH . 
L 8 HOH A 63 563 14 HOH HOH . 
L 8 HOH A 64 564 86 HOH HOH . 
L 8 HOH A 65 565 18 HOH HOH . 
L 8 HOH A 66 566 42 HOH HOH . 
L 8 HOH A 67 567 40 HOH HOH . 
L 8 HOH A 68 568 54 HOH HOH . 
L 8 HOH A 69 569 122 HOH HOH . 
L 8 HOH A 70 570 7 HOH HOH . 
L 8 HOH A 71 571 13 HOH HOH . 
L 8 HOH A 72 572 22 HOH HOH . 
L 8 HOH A 73 573 56 HOH HOH . 
L 8 HOH A 74 574 74 HOH HOH . 
L 8 HOH A 75 575 85 HOH HOH . 
L 8 HOH A 76 576 127 HOH HOH . 
L 8 HOH A 77 577 2 HOH HOH . 
L 8 HOH A 78 578 6 HOH HOH . 
L 8 HOH A 79 579 119 HOH HOH . 
L 8 HOH A 80 580 10 HOH HOH . 
L 8 HOH A 81 581 112 HOH HOH . 
L 8 HOH A 82 582 89 HOH HOH . 
L 8 HOH A 83 583 90 HOH HOH . 
L 8 HOH A 84 584 131 HOH HOH . 
L 8 HOH A 85 585 61 HOH HOH . 
L 8 HOH A 86 586 104 HOH HOH . 
L 8 HOH A 87 587 125 HOH HOH . 
L 8 HOH A 88 588 36 HOH HOH . 
L 8 HOH A 89 589 34 HOH HOH . 
L 8 HOH A 90 590 44 HOH HOH . 
L 8 HOH A 91 591 11 HOH HOH . 
L 8 HOH A 92 592 69 HOH HOH . 
L 8 HOH A 93 593 5 HOH HOH . 
L 8 HOH A 94 594 52 HOH HOH . 
L 8 HOH A 95 595 33 HOH HOH . 
L 8 HOH A 96 596 83 HOH HOH . 
L 8 HOH A 97 597 64 HOH HOH . 
L 8 HOH A 98 598 37 HOH HOH . 
L 8 HOH A 99 599 97 HOH HOH . 
L 8 HOH A 100 600 68 HOH HOH . 
L 8 HOH A 101 601 50 HOH HOH . 
L 8 HOH A 102 602 41 HOH HOH . 
L 8 HOH A 103 603 39 HOH HOH . 
L 8 HOH A 104 604 113 HOH HOH . 
L 8 HOH A 105 605 29 HOH HOH . 
L 8 HOH A 106 606 107 HOH HOH . 
L 8 HOH A 107 607 25 HOH HOH . 
L 8 HOH A 108 608 32 HOH HOH . 
L 8 HOH A 109 609 59 HOH HOH . 
L 8 HOH A 110 610 133 HOH HOH . 
L 8 HOH A 111 611 124 HOH HOH . 
L 8 HOH A 112 612 81 HOH HOH . 
L 8 HOH A 113 613 115 HOH HOH . 
L 8 HOH A 114 614 87 HOH HOH . 
L 8 HOH A 115 615 65 HOH HOH . 
L 8 HOH A 116 616 26 HOH HOH . 
L 8 HOH A 117 617 60 HOH HOH . 
L 8 HOH A 118 618 45 HOH HOH . 
L 8 HOH A 119 619 94 HOH HOH . 
L 8 HOH A 120 620 27 HOH HOH . 
L 8 HOH A 121 621 102 HOH HOH . 
L 8 HOH A 122 622 106 HOH HOH . 
L 8 HOH A 123 623 132 HOH HOH . 
L 8 HOH A 124 624 116 HOH HOH . 
L 8 HOH A 125 625 77 HOH HOH . 
L 8 HOH A 126 626 100 HOH HOH . 
L 8 HOH A 127 627 108 HOH HOH . 
L 8 HOH A 128 628 117 HOH HOH . 
L 8 HOH A 129 629 78 HOH HOH . 
L 8 HOH A 130 630 99 HOH HOH . 
L 8 HOH A 131 631 21 HOH HOH . 
L 8 HOH A 132 632 84 HOH HOH . 
L 8 HOH A 133 633 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 6 35.598 11.963 16.054 1 36.97 ? C1 NAG 405 A 1 
HETATM 2 C C2 NAG . . . F 6 36.905 12.678 16.373 1 42.88 ? C2 NAG 405 A 1 
HETATM 3 C C3 NAG . . . F 6 37.766 12.763 15.114 0.8 44.71 ? C3 NAG 405 A 1 
HETATM 4 C C4 NAG . . . F 6 37.945 11.359 14.557 0.8 46.3 ? C4 NAG 405 A 1 
HETATM 5 C C5 NAG . . . F 6 36.542 10.86 14.191 1 45.32 ? C5 NAG 405 A 1 
HETATM 6 C C6 NAG . . . F 6 36.541 9.587 13.348 1 45.58 ? C6 NAG 405 A 1 
HETATM 7 C C7 NAG . . . F 6 36.902 14.349 18.146 1 51.97 ? C7 NAG 405 A 1 
HETATM 8 C C8 NAG . . . F 6 36.431 15.71 18.586 1 51.78 ? C8 NAG 405 A 1 
HETATM 9 N N2 NAG . . . F 6 36.581 13.993 16.898 1 47.33 ? N2 NAG 405 A 1 
HETATM 10 O O3 NAG . . . F 6 39.043 13.331 15.391 0.8 50.07 ? O3 NAG 405 A 1 
HETATM 11 O O4 NAG . . . F 6 38.835 11.354 13.436 0.8 48.51 ? O4 NAG 405 A 1 
HETATM 12 O O5 NAG . . . F 6 35.828 10.695 15.43 1 40.69 ? O5 NAG 405 A 1 
HETATM 13 O O6 NAG . . . F 6 36.364 8.434 14.171 1 49.17 ? O6 NAG 405 A 1 
HETATM 14 O O7 NAG . . . F 6 37.533 13.601 18.883 1 50.27 ? O7 NAG 405 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#