data_7PNA # _model_server_result.job_id p2UTnJK0VPB9v6uhODOV0g _model_server_result.datetime_utc '2024-12-12 23:38:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pna # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7PNA # _exptl.entry_id 7PNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.93 _cell.angle_gamma 90 _cell.entry_id 7PNA _cell.length_a 51.466 _cell.length_b 58.082 _cell.length_c 61.198 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 278 A CYS 278 1_555 A SG CYS 319 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? covale ? covale1 A ND2 ASN 11 A ASN 11 1_555 F C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A ND2 ASN 141 A ASN 141 1_555 H C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 161 A ASN 161 1_555 I C1 NAG . A NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 A ND2 ASN 182 A ASN 182 1_555 J C1 NAG . A NAG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 A ND2 ASN 286 A ASN 286 1_555 G C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? metalc ? metalc1 A SG CYS 36 A CYS 36 1_555 C FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 A OE2 GLU 122 A GLU 122 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 A O GLY 123 A GLY 123 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A OG SER 126 A SER 126 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 C O1A HEM . A HEM 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc6 D MG MG . A MG 403 1_555 L O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc7 D MG MG . A MG 403 1_555 L O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 360 n n C1 O1 NAG sing 361 n n C1 O5 NAG sing 362 n n C1 H1 NAG sing 363 n n C2 C3 NAG sing 364 n n C2 N2 NAG sing 365 n n C2 H2 NAG sing 366 n n C3 C4 NAG sing 367 n n C3 O3 NAG sing 368 n n C3 H3 NAG sing 369 n n C4 C5 NAG sing 370 n n C4 O4 NAG sing 371 n n C4 H4 NAG sing 372 n n C5 C6 NAG sing 373 n n C5 O5 NAG sing 374 n n C5 H5 NAG sing 375 n n C6 O6 NAG sing 376 n n C6 H61 NAG sing 377 n n C6 H62 NAG sing 378 n n C7 C8 NAG sing 379 n n C7 N2 NAG sing 380 n n C7 O7 NAG doub 381 n n C8 H81 NAG sing 382 n n C8 H82 NAG sing 383 n n C8 H83 NAG sing 384 n n N2 HN2 NAG sing 385 n n O1 HO1 NAG sing 386 n n O3 HO3 NAG sing 387 n n O4 HO4 NAG sing 388 n n O6 HO6 NAG sing 389 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7PNA _atom_sites.fract_transf_matrix[1][1] 0.01943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 1 PO4 PO4 . C 3 HEM A 1 402 1000 HEM HEM . D 4 MG A 1 403 1001 MG MG . E 5 CL A 1 404 1002 CL CL . F 6 NAG A 1 405 1003 NAG NAG . G 6 NAG A 1 406 1004 NAG NAG . H 6 NAG A 1 407 1005 NAG NAG . I 6 NAG A 1 408 1006 NAG NAG . J 6 NAG A 1 409 1007 NAG NAG . K 7 7UT A 1 410 1008 7UT MTX . L 8 HOH A 1 501 109 HOH HOH . L 8 HOH A 2 502 123 HOH HOH . L 8 HOH A 3 503 121 HOH HOH . L 8 HOH A 4 504 76 HOH HOH . L 8 HOH A 5 505 95 HOH HOH . L 8 HOH A 6 506 46 HOH HOH . L 8 HOH A 7 507 66 HOH HOH . L 8 HOH A 8 508 62 HOH HOH . L 8 HOH A 9 509 120 HOH HOH . L 8 HOH A 10 510 110 HOH HOH . L 8 HOH A 11 511 67 HOH HOH . L 8 HOH A 12 512 8 HOH HOH . L 8 HOH A 13 513 114 HOH HOH . L 8 HOH A 14 514 73 HOH HOH . L 8 HOH A 15 515 20 HOH HOH . L 8 HOH A 16 516 58 HOH HOH . L 8 HOH A 17 517 48 HOH HOH . L 8 HOH A 18 518 30 HOH HOH . L 8 HOH A 19 519 96 HOH HOH . L 8 HOH A 20 520 88 HOH HOH . L 8 HOH A 21 521 82 HOH HOH . L 8 HOH A 22 522 4 HOH HOH . L 8 HOH A 23 523 130 HOH HOH . L 8 HOH A 24 524 70 HOH HOH . L 8 HOH A 25 525 79 HOH HOH . L 8 HOH A 26 526 98 HOH HOH . L 8 HOH A 27 527 63 HOH HOH . L 8 HOH A 28 528 38 HOH HOH . L 8 HOH A 29 529 91 HOH HOH . L 8 HOH A 30 530 47 HOH HOH . L 8 HOH A 31 531 19 HOH HOH . L 8 HOH A 32 532 101 HOH HOH . L 8 HOH A 33 533 1 HOH HOH . L 8 HOH A 34 534 92 HOH HOH . L 8 HOH A 35 535 53 HOH HOH . L 8 HOH A 36 536 105 HOH HOH . L 8 HOH A 37 537 55 HOH HOH . L 8 HOH A 38 538 111 HOH HOH . L 8 HOH A 39 539 28 HOH HOH . L 8 HOH A 40 540 93 HOH HOH . L 8 HOH A 41 541 57 HOH HOH . L 8 HOH A 42 542 16 HOH HOH . L 8 HOH A 43 543 15 HOH HOH . L 8 HOH A 44 544 43 HOH HOH . L 8 HOH A 45 545 49 HOH HOH . L 8 HOH A 46 546 128 HOH HOH . L 8 HOH A 47 547 17 HOH HOH . L 8 HOH A 48 548 129 HOH HOH . L 8 HOH A 49 549 31 HOH HOH . L 8 HOH A 50 550 75 HOH HOH . L 8 HOH A 51 551 80 HOH HOH . L 8 HOH A 52 552 118 HOH HOH . L 8 HOH A 53 553 126 HOH HOH . L 8 HOH A 54 554 3 HOH HOH . L 8 HOH A 55 555 23 HOH HOH . L 8 HOH A 56 556 24 HOH HOH . L 8 HOH A 57 557 71 HOH HOH . L 8 HOH A 58 558 51 HOH HOH . L 8 HOH A 59 559 103 HOH HOH . L 8 HOH A 60 560 9 HOH HOH . L 8 HOH A 61 561 35 HOH HOH . L 8 HOH A 62 562 12 HOH HOH . L 8 HOH A 63 563 14 HOH HOH . L 8 HOH A 64 564 86 HOH HOH . L 8 HOH A 65 565 18 HOH HOH . L 8 HOH A 66 566 42 HOH HOH . L 8 HOH A 67 567 40 HOH HOH . L 8 HOH A 68 568 54 HOH HOH . L 8 HOH A 69 569 122 HOH HOH . L 8 HOH A 70 570 7 HOH HOH . L 8 HOH A 71 571 13 HOH HOH . L 8 HOH A 72 572 22 HOH HOH . L 8 HOH A 73 573 56 HOH HOH . L 8 HOH A 74 574 74 HOH HOH . L 8 HOH A 75 575 85 HOH HOH . L 8 HOH A 76 576 127 HOH HOH . L 8 HOH A 77 577 2 HOH HOH . L 8 HOH A 78 578 6 HOH HOH . L 8 HOH A 79 579 119 HOH HOH . L 8 HOH A 80 580 10 HOH HOH . L 8 HOH A 81 581 112 HOH HOH . L 8 HOH A 82 582 89 HOH HOH . L 8 HOH A 83 583 90 HOH HOH . L 8 HOH A 84 584 131 HOH HOH . L 8 HOH A 85 585 61 HOH HOH . L 8 HOH A 86 586 104 HOH HOH . L 8 HOH A 87 587 125 HOH HOH . L 8 HOH A 88 588 36 HOH HOH . L 8 HOH A 89 589 34 HOH HOH . L 8 HOH A 90 590 44 HOH HOH . L 8 HOH A 91 591 11 HOH HOH . L 8 HOH A 92 592 69 HOH HOH . L 8 HOH A 93 593 5 HOH HOH . L 8 HOH A 94 594 52 HOH HOH . L 8 HOH A 95 595 33 HOH HOH . L 8 HOH A 96 596 83 HOH HOH . L 8 HOH A 97 597 64 HOH HOH . L 8 HOH A 98 598 37 HOH HOH . L 8 HOH A 99 599 97 HOH HOH . L 8 HOH A 100 600 68 HOH HOH . L 8 HOH A 101 601 50 HOH HOH . L 8 HOH A 102 602 41 HOH HOH . L 8 HOH A 103 603 39 HOH HOH . L 8 HOH A 104 604 113 HOH HOH . L 8 HOH A 105 605 29 HOH HOH . L 8 HOH A 106 606 107 HOH HOH . L 8 HOH A 107 607 25 HOH HOH . L 8 HOH A 108 608 32 HOH HOH . L 8 HOH A 109 609 59 HOH HOH . L 8 HOH A 110 610 133 HOH HOH . L 8 HOH A 111 611 124 HOH HOH . L 8 HOH A 112 612 81 HOH HOH . L 8 HOH A 113 613 115 HOH HOH . L 8 HOH A 114 614 87 HOH HOH . L 8 HOH A 115 615 65 HOH HOH . L 8 HOH A 116 616 26 HOH HOH . L 8 HOH A 117 617 60 HOH HOH . L 8 HOH A 118 618 45 HOH HOH . L 8 HOH A 119 619 94 HOH HOH . L 8 HOH A 120 620 27 HOH HOH . L 8 HOH A 121 621 102 HOH HOH . L 8 HOH A 122 622 106 HOH HOH . L 8 HOH A 123 623 132 HOH HOH . L 8 HOH A 124 624 116 HOH HOH . L 8 HOH A 125 625 77 HOH HOH . L 8 HOH A 126 626 100 HOH HOH . L 8 HOH A 127 627 108 HOH HOH . L 8 HOH A 128 628 117 HOH HOH . L 8 HOH A 129 629 78 HOH HOH . L 8 HOH A 130 630 99 HOH HOH . L 8 HOH A 131 631 21 HOH HOH . L 8 HOH A 132 632 84 HOH HOH . L 8 HOH A 133 633 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 6 8.758 -13.592 -4.059 1 16.52 ? C1 NAG 407 A 1 HETATM 2 C C2 NAG . . . H 6 7.849 -14.713 -3.624 1 17.72 ? C2 NAG 407 A 1 HETATM 3 C C3 NAG . . . H 6 7.146 -15.285 -4.867 1 18.03 ? C3 NAG 407 A 1 HETATM 4 C C4 NAG . . . H 6 6.396 -14.125 -5.534 1 18.33 ? C4 NAG 407 A 1 HETATM 5 C C5 NAG . . . H 6 7.356 -13.007 -5.931 1 17.53 ? C5 NAG 407 A 1 HETATM 6 C C6 NAG . . . H 6 6.709 -11.794 -6.62 1 17.08 ? C6 NAG 407 A 1 HETATM 7 C C7 NAG . . . H 6 9.624 -16.331 -3.205 1 22.9 ? C7 NAG 407 A 1 HETATM 8 C C8 NAG . . . H 6 10.138 -17.377 -2.255 1 21.86 ? C8 NAG 407 A 1 HETATM 9 N N2 NAG . . . H 6 8.538 -15.713 -2.813 1 19.53 ? N2 NAG 407 A 1 HETATM 10 O O3 NAG . . . H 6 6.259 -16.356 -4.421 1 18.37 ? O3 NAG 407 A 1 HETATM 11 O O4 NAG . . . H 6 5.658 -14.528 -6.68 1 20.03 ? O4 NAG 407 A 1 HETATM 12 O O5 NAG . . . H 6 7.958 -12.574 -4.695 1 17.85 ? O5 NAG 407 A 1 HETATM 13 O O6 NAG . . . H 6 5.701 -11.272 -5.73 1 15.32 ? O6 NAG 407 A 1 HETATM 14 O O7 NAG . . . H 6 10.158 -16.087 -4.292 1 27.71 ? O7 NAG 407 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 14 #