data_7PNC # _model_server_result.job_id MVMbCVjoTzJCy_jfl6N08g _model_server_result.datetime_utc '2024-11-18 07:41:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7PNC # _exptl.entry_id 7PNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PNC _cell.length_a 89.75 _cell.length_b 131.7 _cell.length_c 51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N ? 4 N N N ? 4 P N N ? 4 Q N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.43 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7PNC _atom_sites.fract_transf_matrix[1][1] 0.011142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 CL A 1 302 500 CL CL . D 4 BOG A 1 303 601 BOG LIG . E 4 BOG A 1 304 701 BOG LIG . F 4 BOG A 1 305 801 BOG BOG . G 5 MPG A 1 306 901 MPG MPG . H 4 BOG A 1 307 1001 BOG BOG . I 4 BOG A 1 308 1101 BOG BOG . J 5 MPG A 1 309 1201 MPG MPG . K 5 MPG A 1 310 1301 MPG MPG . L 5 MPG A 1 311 1401 MPG MPG . M 5 MPG A 1 312 1501 MPG MPG . N 4 BOG A 1 313 1601 BOG BOG . O 5 MPG A 1 314 1701 MPG MPG . P 4 BOG A 1 315 1801 BOG BOG . Q 4 BOG A 1 316 1901 BOG BOG . R 3 CL A 1 317 1 CL CL . S 6 HOH A 1 401 27 HOH HOH . S 6 HOH A 2 402 32 HOH HOH . S 6 HOH A 3 403 49 HOH HOH . S 6 HOH A 4 404 12 HOH HOH . S 6 HOH A 5 405 17 HOH HOH . S 6 HOH A 6 406 5 HOH HOH . S 6 HOH A 7 407 46 HOH HOH . S 6 HOH A 8 408 3 HOH HOH . S 6 HOH A 9 409 48 HOH HOH . S 6 HOH A 10 410 2 HOH HOH . S 6 HOH A 11 411 7 HOH HOH . S 6 HOH A 12 412 36 HOH HOH . S 6 HOH A 13 413 15 HOH HOH . S 6 HOH A 14 414 19 HOH HOH . S 6 HOH A 15 415 43 HOH HOH . S 6 HOH A 16 416 1 HOH HOH . S 6 HOH A 17 417 6 HOH HOH . S 6 HOH A 18 418 4 HOH HOH . S 6 HOH A 19 419 34 HOH HOH . S 6 HOH A 20 420 8 HOH HOH . S 6 HOH A 21 421 10 HOH HOH . S 6 HOH A 22 422 25 HOH HOH . S 6 HOH A 23 423 29 HOH HOH . S 6 HOH A 24 424 14 HOH HOH . S 6 HOH A 25 425 39 HOH HOH . S 6 HOH A 26 426 9 HOH HOH . S 6 HOH A 27 427 41 HOH HOH . S 6 HOH A 28 428 44 HOH HOH . S 6 HOH A 29 429 18 HOH HOH . S 6 HOH A 30 430 35 HOH HOH . S 6 HOH A 31 431 42 HOH HOH . S 6 HOH A 32 432 26 HOH HOH . S 6 HOH A 33 433 40 HOH HOH . S 6 HOH A 34 434 11 HOH HOH . S 6 HOH A 35 435 33 HOH HOH . S 6 HOH A 36 436 38 HOH HOH . S 6 HOH A 37 437 37 HOH HOH . S 6 HOH A 38 438 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 4 41.979 21.964 10.14 1 116.31 ? C1 BOG 303 A 1 HETATM 2 O O1 BOG . . . D 4 41.487 23.195 9.796 1 111.83 ? O1 BOG 303 A 1 HETATM 3 C C2 BOG . . . D 4 40.863 21.152 10.808 1 122.49 ? C2 BOG 303 A 1 HETATM 4 O O2 BOG . . . D 4 40.668 21.595 12.154 1 128.27 ? O2 BOG 303 A 1 HETATM 5 C C3 BOG . . . D 4 41.134 19.675 10.821 1 128.14 ? C3 BOG 303 A 1 HETATM 6 O O3 BOG . . . D 4 40.739 19.153 12.106 1 133.58 ? O3 BOG 303 A 1 HETATM 7 C C4 BOG . . . D 4 42.6 19.383 10.576 1 130.29 ? C4 BOG 303 A 1 HETATM 8 O O4 BOG . . . D 4 42.855 17.989 10.675 1 136.66 ? O4 BOG 303 A 1 HETATM 9 C C5 BOG . . . D 4 43.021 19.899 9.181 1 142.08 ? C5 BOG 303 A 1 HETATM 10 O O5 BOG . . . D 4 42.513 21.269 8.909 1 122.16 ? O5 BOG 303 A 1 HETATM 11 C C6 BOG . . . D 4 42.504 18.964 8.113 1 156.59 ? C6 BOG 303 A 1 HETATM 12 O O6 BOG . . . D 4 43.468 18.789 7.126 1 159.8 ? O6 BOG 303 A 1 HETATM 13 C C1' BOG . . . D 4 42.467 24.174 9.522 1 109.37 ? C1' BOG 303 A 1 HETATM 14 C C2' BOG . . . D 4 41.78 25.374 8.861 1 103.19 ? C2' BOG 303 A 1 HETATM 15 C C3' BOG . . . D 4 42.706 26.573 8.622 1 95.05 ? C3' BOG 303 A 1 HETATM 16 C C4' BOG . . . D 4 42.063 27.6 7.691 1 87.62 ? C4' BOG 303 A 1 HETATM 17 C C5' BOG . . . D 4 42.483 29.042 7.956 1 80.26 ? C5' BOG 303 A 1 HETATM 18 C C6' BOG . . . D 4 42.451 29.885 6.687 1 71.24 ? C6' BOG 303 A 1 HETATM 19 C C7' BOG . . . D 4 42.101 31.344 6.928 1 66.28 ? C7' BOG 303 A 1 HETATM 20 C C8' BOG . . . D 4 43.288 32.142 7.44 1 63.61 ? C8' BOG 303 A 1 HETATM 21 H H1 BOG . . . D 4 42.708 22.087 10.767 1 139.57 ? H1 BOG 303 A 1 HETATM 22 H H2 BOG . . . D 4 40.05 21.315 10.305 1 146.99 ? H2 BOG 303 A 1 HETATM 23 H HO2 BOG . . . D 4 40.376 20.954 12.622 1 153.93 ? HO2 BOG 303 A 1 HETATM 24 H H3 BOG . . . D 4 40.612 19.233 10.133 1 153.77 ? H3 BOG 303 A 1 HETATM 25 H HO3 BOG . . . D 4 40.043 18.683 12.018 1 160.3 ? HO3 BOG 303 A 1 HETATM 26 H H4 BOG . . . D 4 43.133 19.813 11.263 1 156.35 ? H4 BOG 303 A 1 HETATM 27 H HO4 BOG . . . D 4 43.684 17.864 10.784 1 163.99 ? HO4 BOG 303 A 1 HETATM 28 H H5 BOG . . . D 4 43.991 19.909 9.142 1 170.5 ? H5 BOG 303 A 1 HETATM 29 H H61 BOG . . . D 4 41.704 19.343 7.716 1 187.91 ? H61 BOG 303 A 1 HETATM 30 H H62 BOG . . . D 4 42.295 18.106 8.513 1 187.91 ? H62 BOG 303 A 1 HETATM 31 H HO6 BOG . . . D 4 43.411 18.01 6.804 1 191.75 ? HO6 BOG 303 A 1 HETATM 32 H "H1'1" BOG . . . D 4 42.89 24.454 10.349 1 131.24 ? "H1'1" BOG 303 A 1 HETATM 33 H "H1'2" BOG . . . D 4 43.135 23.809 8.921 1 131.24 ? "H1'2" BOG 303 A 1 HETATM 34 H "H2'1" BOG . . . D 4 41.049 25.66 9.431 1 123.83 ? "H2'1" BOG 303 A 1 HETATM 35 H "H2'2" BOG . . . D 4 41.42 25.088 8.007 1 123.83 ? "H2'2" BOG 303 A 1 HETATM 36 H "H3'1" BOG . . . D 4 43.534 26.26 8.225 1 114.06 ? "H3'1" BOG 303 A 1 HETATM 37 H "H3'2" BOG . . . D 4 42.905 26.995 9.472 1 114.06 ? "H3'2" BOG 303 A 1 HETATM 38 H "H4'1" BOG . . . D 4 42.301 27.376 6.778 1 105.14 ? "H4'1" BOG 303 A 1 HETATM 39 H "H4'2" BOG . . . D 4 41.1 27.54 7.789 1 105.14 ? "H4'2" BOG 303 A 1 HETATM 40 H "H5'1" BOG . . . D 4 41.881 29.431 8.609 1 96.31 ? "H5'1" BOG 303 A 1 HETATM 41 H "H5'2" BOG . . . D 4 43.384 29.048 8.316 1 96.31 ? "H5'2" BOG 303 A 1 HETATM 42 H "H6'1" BOG . . . D 4 41.794 29.506 6.083 1 85.49 ? "H6'1" BOG 303 A 1 HETATM 43 H "H6'2" BOG . . . D 4 43.325 29.843 6.268 1 85.49 ? "H6'2" BOG 303 A 1 HETATM 44 H "H7'1" BOG . . . D 4 41.384 31.393 7.58 1 79.54 ? "H7'1" BOG 303 A 1 HETATM 45 H "H7'2" BOG . . . D 4 41.795 31.736 6.095 1 79.54 ? "H7'2" BOG 303 A 1 HETATM 46 H "H8'1" BOG . . . D 4 43.575 31.781 8.294 1 76.34 ? "H8'1" BOG 303 A 1 HETATM 47 H "H8'2" BOG . . . D 4 44.016 32.083 6.803 1 76.34 ? "H8'2" BOG 303 A 1 HETATM 48 H "H8'3" BOG . . . D 4 43.03 33.07 7.552 1 76.34 ? "H8'3" BOG 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #