data_7PNC # _model_server_result.job_id puXXMCaVo1ooZSoT_Canww _model_server_result.datetime_utc '2024-11-18 07:35:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 7PNC # _exptl.entry_id 7PNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PNC _cell.length_a 89.75 _cell.length_b 131.7 _cell.length_c 51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 O N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.43 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 272 n n C2 C1 MPG sing 273 n n C3 C4 MPG sing 274 n n C4 C5 MPG sing 275 n n C5 C6 MPG sing 276 n n C6 C7 MPG sing 277 n n C7 C8 MPG sing 278 n n C8 C9 MPG sing 279 n n C9 C10 MPG doub 280 z n C10 C11 MPG sing 281 n n C11 C12 MPG sing 282 n n C12 C13 MPG sing 283 n n C13 C14 MPG sing 284 n n C14 C15 MPG sing 285 n n C15 C16 MPG sing 286 n n C16 C17 MPG sing 287 n n C17 C18 MPG sing 288 n n O1 C1 MPG sing 289 n n O1 CX3 MPG sing 290 n n CXD O2 MPG sing 291 n n CXD C21 MPG sing 292 n n CXD CX3 MPG sing 293 n n C21 O3 MPG sing 294 n n C2 H21C MPG sing 295 n n C2 H22C MPG sing 296 n n C3 H31C MPG sing 297 n n C3 H32C MPG sing 298 n n CX3 O4 MPG doub 299 n n C4 H41C MPG sing 300 n n C4 H42C MPG sing 301 n n C5 H51C MPG sing 302 n n C5 H52C MPG sing 303 n n C6 H61C MPG sing 304 n n C6 H62C MPG sing 305 n n C7 H71C MPG sing 306 n n C7 H72C MPG sing 307 n n C8 H81C MPG sing 308 n n C8 H82C MPG sing 309 n n C9 H9 MPG sing 310 n n C10 H10 MPG sing 311 n n C11 H111 MPG sing 312 n n C11 H112 MPG sing 313 n n C12 H121 MPG sing 314 n n C12 H122 MPG sing 315 n n C13 H131 MPG sing 316 n n C13 H132 MPG sing 317 n n C14 H141 MPG sing 318 n n C14 H142 MPG sing 319 n n C15 H151 MPG sing 320 n n C15 H152 MPG sing 321 n n C16 H161 MPG sing 322 n n C16 H162 MPG sing 323 n n C17 H171 MPG sing 324 n n C17 H172 MPG sing 325 n n C18 H181 MPG sing 326 n n C18 H182 MPG sing 327 n n C18 H183 MPG sing 328 n n C1 HX31 MPG sing 329 n n C1 HX32 MPG sing 330 n n CXD HXD MPG sing 331 n n O2 H2 MPG sing 332 n n C21 H211 MPG sing 333 n n C21 H212 MPG sing 334 n n O3 H3 MPG sing 335 n n # _atom_sites.entry_id 7PNC _atom_sites.fract_transf_matrix[1][1] 0.011142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 CL A 1 302 500 CL CL . D 4 BOG A 1 303 601 BOG LIG . E 4 BOG A 1 304 701 BOG LIG . F 4 BOG A 1 305 801 BOG BOG . G 5 MPG A 1 306 901 MPG MPG . H 4 BOG A 1 307 1001 BOG BOG . I 4 BOG A 1 308 1101 BOG BOG . J 5 MPG A 1 309 1201 MPG MPG . K 5 MPG A 1 310 1301 MPG MPG . L 5 MPG A 1 311 1401 MPG MPG . M 5 MPG A 1 312 1501 MPG MPG . N 4 BOG A 1 313 1601 BOG BOG . O 5 MPG A 1 314 1701 MPG MPG . P 4 BOG A 1 315 1801 BOG BOG . Q 4 BOG A 1 316 1901 BOG BOG . R 3 CL A 1 317 1 CL CL . S 6 HOH A 1 401 27 HOH HOH . S 6 HOH A 2 402 32 HOH HOH . S 6 HOH A 3 403 49 HOH HOH . S 6 HOH A 4 404 12 HOH HOH . S 6 HOH A 5 405 17 HOH HOH . S 6 HOH A 6 406 5 HOH HOH . S 6 HOH A 7 407 46 HOH HOH . S 6 HOH A 8 408 3 HOH HOH . S 6 HOH A 9 409 48 HOH HOH . S 6 HOH A 10 410 2 HOH HOH . S 6 HOH A 11 411 7 HOH HOH . S 6 HOH A 12 412 36 HOH HOH . S 6 HOH A 13 413 15 HOH HOH . S 6 HOH A 14 414 19 HOH HOH . S 6 HOH A 15 415 43 HOH HOH . S 6 HOH A 16 416 1 HOH HOH . S 6 HOH A 17 417 6 HOH HOH . S 6 HOH A 18 418 4 HOH HOH . S 6 HOH A 19 419 34 HOH HOH . S 6 HOH A 20 420 8 HOH HOH . S 6 HOH A 21 421 10 HOH HOH . S 6 HOH A 22 422 25 HOH HOH . S 6 HOH A 23 423 29 HOH HOH . S 6 HOH A 24 424 14 HOH HOH . S 6 HOH A 25 425 39 HOH HOH . S 6 HOH A 26 426 9 HOH HOH . S 6 HOH A 27 427 41 HOH HOH . S 6 HOH A 28 428 44 HOH HOH . S 6 HOH A 29 429 18 HOH HOH . S 6 HOH A 30 430 35 HOH HOH . S 6 HOH A 31 431 42 HOH HOH . S 6 HOH A 32 432 26 HOH HOH . S 6 HOH A 33 433 40 HOH HOH . S 6 HOH A 34 434 11 HOH HOH . S 6 HOH A 35 435 33 HOH HOH . S 6 HOH A 36 436 38 HOH HOH . S 6 HOH A 37 437 37 HOH HOH . S 6 HOH A 38 438 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . G 5 37.314 28.123 15.154 1 106.21 ? C2 MPG 306 A 1 HETATM 2 C C3 MPG . . . G 5 37.729 29.596 15.131 1 106.04 ? C3 MPG 306 A 1 HETATM 3 C C4 MPG . . . G 5 36.499 30.489 14.946 1 95.43 ? C4 MPG 306 A 1 HETATM 4 C C5 MPG . . . G 5 36.93 31.953 14.829 1 87.52 ? C5 MPG 306 A 1 HETATM 5 C C6 MPG . . . G 5 36.194 32.834 15.846 1 91.36 ? C6 MPG 306 A 1 HETATM 6 C C7 MPG . . . G 5 35.715 34.112 15.149 1 86.15 ? C7 MPG 306 A 1 HETATM 7 C C8 MPG . . . G 5 35.457 35.267 16.125 1 93.96 ? C8 MPG 306 A 1 HETATM 8 C C9 MPG . . . G 5 35.806 36.575 15.404 1 94.52 ? C9 MPG 306 A 1 HETATM 9 C C10 MPG . . . G 5 34.887 37.479 15.111 1 96.65 ? C10 MPG 306 A 1 HETATM 10 C C11 MPG . . . G 5 35.293 38.759 14.372 1 100.06 ? C11 MPG 306 A 1 HETATM 11 C C12 MPG . . . G 5 34.849 40.011 15.124 1 102.99 ? C12 MPG 306 A 1 HETATM 12 C C13 MPG . . . G 5 34.963 41.267 14.249 1 99.84 ? C13 MPG 306 A 1 HETATM 13 C C14 MPG . . . G 5 36.103 41.162 13.232 1 90.81 ? C14 MPG 306 A 1 HETATM 14 C C15 MPG . . . G 5 36.422 42.542 12.649 1 83.16 ? C15 MPG 306 A 1 HETATM 15 C C16 MPG . . . G 5 37.903 42.619 12.272 1 73 ? C16 MPG 306 A 1 HETATM 16 C C17 MPG . . . G 5 38.164 41.854 10.976 1 77.08 ? C17 MPG 306 A 1 HETATM 17 C C18 MPG . . . G 5 39.631 41.433 10.911 1 84.02 ? C18 MPG 306 A 1 HETATM 18 O O1 MPG . . . G 5 38.136 25.904 14.735 1 96.98 ? O1 MPG 306 A 1 HETATM 19 C C1 MPG . . . G 5 38.365 27.259 14.451 1 99.3 ? C1 MPG 306 A 1 HETATM 20 C CXD MPG . . . G 5 37.387 24.175 13.041 1 109.76 ? CXD MPG 306 A 1 HETATM 21 O O2 MPG . . . G 5 36.461 23.716 13.967 1 105.77 ? O2 MPG 306 A 1 HETATM 22 C C21 MPG . . . G 5 37.978 22.967 12.321 1 114.19 ? C21 MPG 306 A 1 HETATM 23 O O3 MPG . . . G 5 36.969 22.071 12.002 1 107.81 ? O3 MPG 306 A 1 HETATM 24 O O4 MPG . . . G 5 39.598 24.91 13.346 1 98.53 ? O4 MPG 306 A 1 HETATM 25 C CX3 MPG . . . G 5 38.474 25.011 13.707 1 104.67 ? CX3 MPG 306 A 1 HETATM 26 H H21C MPG . . . G 5 36.463 28.024 14.699 1 127.45 ? H21C MPG 306 A 1 HETATM 27 H H22C MPG . . . G 5 37.225 27.831 16.075 1 127.45 ? H22C MPG 306 A 1 HETATM 28 H H31C MPG . . . G 5 38.345 29.743 14.396 1 127.25 ? H31C MPG 306 A 1 HETATM 29 H H32C MPG . . . G 5 38.165 29.819 15.968 1 127.25 ? H32C MPG 306 A 1 HETATM 30 H H41C MPG . . . G 5 35.911 30.387 15.711 1 114.52 ? H41C MPG 306 A 1 HETATM 31 H H42C MPG . . . G 5 36.029 30.227 14.139 1 114.52 ? H42C MPG 306 A 1 HETATM 32 H H51C MPG . . . G 5 36.731 32.27 13.934 1 105.02 ? H51C MPG 306 A 1 HETATM 33 H H52C MPG . . . G 5 37.885 32.015 14.99 1 105.02 ? H52C MPG 306 A 1 HETATM 34 H H61C MPG . . . G 5 36.796 33.066 16.57 1 109.63 ? H61C MPG 306 A 1 HETATM 35 H H62C MPG . . . G 5 35.431 32.352 16.201 1 109.63 ? H62C MPG 306 A 1 HETATM 36 H H71C MPG . . . G 5 34.891 33.915 14.677 1 103.39 ? H71C MPG 306 A 1 HETATM 37 H H72C MPG . . . G 5 36.393 34.39 14.513 1 103.39 ? H72C MPG 306 A 1 HETATM 38 H H81C MPG . . . G 5 36.014 35.165 16.913 1 112.75 ? H81C MPG 306 A 1 HETATM 39 H H82C MPG . . . G 5 34.523 35.275 16.388 1 112.75 ? H82C MPG 306 A 1 HETATM 40 H H9 MPG . . . G 5 36.69 36.737 15.166 1 113.42 ? H9 MPG 306 A 1 HETATM 41 H H10 MPG . . . G 5 33.999 37.339 15.352 1 115.98 ? H10 MPG 306 A 1 HETATM 42 H H111 MPG . . . G 5 34.883 38.758 13.493 1 120.07 ? H111 MPG 306 A 1 HETATM 43 H H112 MPG . . . G 5 36.259 38.775 14.278 1 120.07 ? H112 MPG 306 A 1 HETATM 44 H H121 MPG . . . G 5 35.408 40.122 15.909 1 123.58 ? H121 MPG 306 A 1 HETATM 45 H H122 MPG . . . G 5 33.925 39.902 15.399 1 123.58 ? H122 MPG 306 A 1 HETATM 46 H H131 MPG . . . G 5 35.125 42.033 14.822 1 119.8 ? H131 MPG 306 A 1 HETATM 47 H H132 MPG . . . G 5 34.129 41.392 13.771 1 119.8 ? H132 MPG 306 A 1 HETATM 48 H H141 MPG . . . G 5 35.839 40.565 12.516 1 108.98 ? H141 MPG 306 A 1 HETATM 49 H H142 MPG . . . G 5 36.893 40.811 13.672 1 108.98 ? H142 MPG 306 A 1 HETATM 50 H H151 MPG . . . G 5 36.222 43.224 13.309 1 99.8 ? H151 MPG 306 A 1 HETATM 51 H H152 MPG . . . G 5 35.881 42.689 11.857 1 99.8 ? H152 MPG 306 A 1 HETATM 52 H H161 MPG . . . G 5 38.435 42.231 12.985 1 87.59 ? H161 MPG 306 A 1 HETATM 53 H H162 MPG . . . G 5 38.154 43.548 12.151 1 87.59 ? H162 MPG 306 A 1 HETATM 54 H H171 MPG . . . G 5 37.958 42.424 10.218 1 92.49 ? H171 MPG 306 A 1 HETATM 55 H H172 MPG . . . G 5 37.6 41.065 10.949 1 92.49 ? H172 MPG 306 A 1 HETATM 56 H H181 MPG . . . G 5 40.196 42.22 10.956 1 100.83 ? H181 MPG 306 A 1 HETATM 57 H H182 MPG . . . G 5 39.796 40.963 10.079 1 100.83 ? H182 MPG 306 A 1 HETATM 58 H H183 MPG . . . G 5 39.833 40.847 11.658 1 100.83 ? H183 MPG 306 A 1 HETATM 59 H HX31 MPG . . . G 5 39.248 27.509 14.764 1 119.16 ? HX31 MPG 306 A 1 HETATM 60 H HX32 MPG . . . G 5 38.309 27.401 13.493 1 119.16 ? HX32 MPG 306 A 1 HETATM 61 H HXD MPG . . . G 5 36.949 24.756 12.4 1 131.71 ? HXD MPG 306 A 1 HETATM 62 H H2 MPG . . . G 5 36.671 22.934 14.208 1 126.92 ? H2 MPG 306 A 1 HETATM 63 H H211 MPG . . . G 5 38.624 22.532 12.899 1 137.03 ? H211 MPG 306 A 1 HETATM 64 H H212 MPG . . . G 5 38.417 23.261 11.507 1 137.03 ? H212 MPG 306 A 1 HETATM 65 H H3 MPG . . . G 5 36.23 22.477 11.992 1 129.37 ? H3 MPG 306 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 65 #