data_7PNC # _model_server_result.job_id 7mRJ99dU3HwqMd9sxiGJTg _model_server_result.datetime_utc '2024-11-18 07:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":312}' # _entry.id 7PNC # _exptl.entry_id 7PNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PNC _cell.length_a 89.75 _cell.length_b 131.7 _cell.length_c 51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 O N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.43 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 272 n n C2 C1 MPG sing 273 n n C3 C4 MPG sing 274 n n C4 C5 MPG sing 275 n n C5 C6 MPG sing 276 n n C6 C7 MPG sing 277 n n C7 C8 MPG sing 278 n n C8 C9 MPG sing 279 n n C9 C10 MPG doub 280 z n C10 C11 MPG sing 281 n n C11 C12 MPG sing 282 n n C12 C13 MPG sing 283 n n C13 C14 MPG sing 284 n n C14 C15 MPG sing 285 n n C15 C16 MPG sing 286 n n C16 C17 MPG sing 287 n n C17 C18 MPG sing 288 n n O1 C1 MPG sing 289 n n O1 CX3 MPG sing 290 n n CXD O2 MPG sing 291 n n CXD C21 MPG sing 292 n n CXD CX3 MPG sing 293 n n C21 O3 MPG sing 294 n n C2 H21C MPG sing 295 n n C2 H22C MPG sing 296 n n C3 H31C MPG sing 297 n n C3 H32C MPG sing 298 n n CX3 O4 MPG doub 299 n n C4 H41C MPG sing 300 n n C4 H42C MPG sing 301 n n C5 H51C MPG sing 302 n n C5 H52C MPG sing 303 n n C6 H61C MPG sing 304 n n C6 H62C MPG sing 305 n n C7 H71C MPG sing 306 n n C7 H72C MPG sing 307 n n C8 H81C MPG sing 308 n n C8 H82C MPG sing 309 n n C9 H9 MPG sing 310 n n C10 H10 MPG sing 311 n n C11 H111 MPG sing 312 n n C11 H112 MPG sing 313 n n C12 H121 MPG sing 314 n n C12 H122 MPG sing 315 n n C13 H131 MPG sing 316 n n C13 H132 MPG sing 317 n n C14 H141 MPG sing 318 n n C14 H142 MPG sing 319 n n C15 H151 MPG sing 320 n n C15 H152 MPG sing 321 n n C16 H161 MPG sing 322 n n C16 H162 MPG sing 323 n n C17 H171 MPG sing 324 n n C17 H172 MPG sing 325 n n C18 H181 MPG sing 326 n n C18 H182 MPG sing 327 n n C18 H183 MPG sing 328 n n C1 HX31 MPG sing 329 n n C1 HX32 MPG sing 330 n n CXD HXD MPG sing 331 n n O2 H2 MPG sing 332 n n C21 H211 MPG sing 333 n n C21 H212 MPG sing 334 n n O3 H3 MPG sing 335 n n # _atom_sites.entry_id 7PNC _atom_sites.fract_transf_matrix[1][1] 0.011142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 CL A 1 302 500 CL CL . D 4 BOG A 1 303 601 BOG LIG . E 4 BOG A 1 304 701 BOG LIG . F 4 BOG A 1 305 801 BOG BOG . G 5 MPG A 1 306 901 MPG MPG . H 4 BOG A 1 307 1001 BOG BOG . I 4 BOG A 1 308 1101 BOG BOG . J 5 MPG A 1 309 1201 MPG MPG . K 5 MPG A 1 310 1301 MPG MPG . L 5 MPG A 1 311 1401 MPG MPG . M 5 MPG A 1 312 1501 MPG MPG . N 4 BOG A 1 313 1601 BOG BOG . O 5 MPG A 1 314 1701 MPG MPG . P 4 BOG A 1 315 1801 BOG BOG . Q 4 BOG A 1 316 1901 BOG BOG . R 3 CL A 1 317 1 CL CL . S 6 HOH A 1 401 27 HOH HOH . S 6 HOH A 2 402 32 HOH HOH . S 6 HOH A 3 403 49 HOH HOH . S 6 HOH A 4 404 12 HOH HOH . S 6 HOH A 5 405 17 HOH HOH . S 6 HOH A 6 406 5 HOH HOH . S 6 HOH A 7 407 46 HOH HOH . S 6 HOH A 8 408 3 HOH HOH . S 6 HOH A 9 409 48 HOH HOH . S 6 HOH A 10 410 2 HOH HOH . S 6 HOH A 11 411 7 HOH HOH . S 6 HOH A 12 412 36 HOH HOH . S 6 HOH A 13 413 15 HOH HOH . S 6 HOH A 14 414 19 HOH HOH . S 6 HOH A 15 415 43 HOH HOH . S 6 HOH A 16 416 1 HOH HOH . S 6 HOH A 17 417 6 HOH HOH . S 6 HOH A 18 418 4 HOH HOH . S 6 HOH A 19 419 34 HOH HOH . S 6 HOH A 20 420 8 HOH HOH . S 6 HOH A 21 421 10 HOH HOH . S 6 HOH A 22 422 25 HOH HOH . S 6 HOH A 23 423 29 HOH HOH . S 6 HOH A 24 424 14 HOH HOH . S 6 HOH A 25 425 39 HOH HOH . S 6 HOH A 26 426 9 HOH HOH . S 6 HOH A 27 427 41 HOH HOH . S 6 HOH A 28 428 44 HOH HOH . S 6 HOH A 29 429 18 HOH HOH . S 6 HOH A 30 430 35 HOH HOH . S 6 HOH A 31 431 42 HOH HOH . S 6 HOH A 32 432 26 HOH HOH . S 6 HOH A 33 433 40 HOH HOH . S 6 HOH A 34 434 11 HOH HOH . S 6 HOH A 35 435 33 HOH HOH . S 6 HOH A 36 436 38 HOH HOH . S 6 HOH A 37 437 37 HOH HOH . S 6 HOH A 38 438 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . M 5 49.403 38.756 -13.283 1 103.37 ? C2 MPG 312 A 1 HETATM 2 C C3 MPG . . . M 5 49.734 39.799 -12.216 1 109.52 ? C3 MPG 312 A 1 HETATM 3 C C4 MPG . . . M 5 49.026 41.111 -12.549 1 112.59 ? C4 MPG 312 A 1 HETATM 4 C C5 MPG . . . M 5 48.355 41.677 -11.298 1 111.14 ? C5 MPG 312 A 1 HETATM 5 C C6 MPG . . . M 5 47.809 43.072 -11.605 1 110.91 ? C6 MPG 312 A 1 HETATM 6 C C7 MPG . . . M 5 48.489 44.103 -10.703 1 110.1 ? C7 MPG 312 A 1 HETATM 7 C C8 MPG . . . M 5 49.368 45.055 -11.519 1 110.04 ? C8 MPG 312 A 1 HETATM 8 C C9 MPG . . . M 5 50.325 45.775 -10.567 1 104.99 ? C9 MPG 312 A 1 HETATM 9 C C10 MPG . . . M 5 50.961 46.883 -10.907 1 96.98 ? C10 MPG 312 A 1 HETATM 10 C C11 MPG . . . M 5 50.783 47.535 -12.28 1 99.82 ? C11 MPG 312 A 1 HETATM 11 C C12 MPG . . . M 5 49.481 48.336 -12.313 1 103.52 ? C12 MPG 312 A 1 HETATM 12 C C13 MPG . . . M 5 49.713 49.715 -12.932 1 111.38 ? C13 MPG 312 A 1 HETATM 13 C C14 MPG . . . M 5 48.383 50.467 -13.006 1 108.9 ? C14 MPG 312 A 1 HETATM 14 C C15 MPG . . . M 5 48.628 51.962 -13.212 1 102.29 ? C15 MPG 312 A 1 HETATM 15 C C16 MPG . . . M 5 48.996 52.626 -11.885 1 96.8 ? C16 MPG 312 A 1 HETATM 16 C C17 MPG . . . M 5 49.417 54.07 -12.151 1 98.06 ? C17 MPG 312 A 1 HETATM 17 C C18 MPG . . . M 5 49.702 54.783 -10.831 1 94.88 ? C18 MPG 312 A 1 HETATM 18 O O1 MPG . . . M 5 49.968 36.548 -14.014 1 109.1 ? O1 MPG 312 A 1 HETATM 19 C C1 MPG . . . M 5 50.41 37.61 -13.215 1 98.07 ? C1 MPG 312 A 1 HETATM 20 C CXD MPG . . . M 5 49.946 34.126 -13.236 1 137.03 ? CXD MPG 312 A 1 HETATM 21 O O2 MPG . . . M 5 49.796 33.457 -14.444 1 146.23 ? O2 MPG 312 A 1 HETATM 22 C C21 MPG . . . M 5 49.245 33.362 -12.106 1 132.51 ? C21 MPG 312 A 1 HETATM 23 O O3 MPG . . . M 5 49.068 34.17 -10.99 1 113 ? O3 MPG 312 A 1 HETATM 24 O O4 MPG . . . M 5 48.276 35.753 -12.777 1 104.64 ? O4 MPG 312 A 1 HETATM 25 C CX3 MPG . . . M 5 49.314 35.525 -13.315 1 115.93 ? CX3 MPG 312 A 1 HETATM 26 H H21C MPG . . . M 5 49.442 39.169 -14.16 1 124.04 ? H21C MPG 312 A 1 HETATM 27 H H22C MPG . . . M 5 48.51 38.41 -13.129 1 124.04 ? H22C MPG 312 A 1 HETATM 28 H H31C MPG . . . M 5 49.436 39.481 -11.35 1 131.43 ? H31C MPG 312 A 1 HETATM 29 H H32C MPG . . . M 5 50.693 39.945 -12.194 1 131.43 ? H32C MPG 312 A 1 HETATM 30 H H41C MPG . . . M 5 48.353 40.949 -13.229 1 135.11 ? H41C MPG 312 A 1 HETATM 31 H H42C MPG . . . M 5 49.675 41.75 -12.882 1 135.11 ? H42C MPG 312 A 1 HETATM 32 H H51C MPG . . . M 5 47.626 41.095 -11.03 1 133.37 ? H51C MPG 312 A 1 HETATM 33 H H52C MPG . . . M 5 49.004 41.733 -10.579 1 133.37 ? H52C MPG 312 A 1 HETATM 34 H H61C MPG . . . M 5 46.852 43.086 -11.445 1 133.1 ? H61C MPG 312 A 1 HETATM 35 H H62C MPG . . . M 5 47.985 43.29 -12.533 1 133.1 ? H62C MPG 312 A 1 HETATM 36 H H71C MPG . . . M 5 47.808 44.618 -10.242 1 132.12 ? H71C MPG 312 A 1 HETATM 37 H H72C MPG . . . M 5 49.04 43.641 -10.053 1 132.12 ? H72C MPG 312 A 1 HETATM 38 H H81C MPG . . . M 5 49.877 44.55 -12.173 1 132.05 ? H81C MPG 312 A 1 HETATM 39 H H82C MPG . . . M 5 48.811 45.704 -11.975 1 132.05 ? H82C MPG 312 A 1 HETATM 40 H H9 MPG . . . M 5 50.465 45.42 -9.718 1 125.98 ? H9 MPG 312 A 1 HETATM 41 H H10 MPG . . . M 5 51.534 47.28 -10.292 1 116.38 ? H10 MPG 312 A 1 HETATM 42 H H111 MPG . . . M 5 51.53 48.13 -12.452 1 119.78 ? H111 MPG 312 A 1 HETATM 43 H H112 MPG . . . M 5 50.754 46.846 -12.961 1 119.78 ? H112 MPG 312 A 1 HETATM 44 H H121 MPG . . . M 5 48.825 47.855 -12.843 1 124.23 ? H121 MPG 312 A 1 HETATM 45 H H122 MPG . . . M 5 49.149 48.444 -11.408 1 124.23 ? H122 MPG 312 A 1 HETATM 46 H H131 MPG . . . M 5 50.338 50.215 -12.384 1 133.66 ? H131 MPG 312 A 1 HETATM 47 H H132 MPG . . . M 5 50.077 49.613 -13.825 1 133.66 ? H132 MPG 312 A 1 HETATM 48 H H141 MPG . . . M 5 47.862 50.123 -13.749 1 130.68 ? H141 MPG 312 A 1 HETATM 49 H H142 MPG . . . M 5 47.894 50.334 -12.179 1 130.68 ? H142 MPG 312 A 1 HETATM 50 H H151 MPG . . . M 5 47.823 52.373 -13.563 1 122.75 ? H151 MPG 312 A 1 HETATM 51 H H152 MPG . . . M 5 49.355 52.083 -13.843 1 122.75 ? H152 MPG 312 A 1 HETATM 52 H H161 MPG . . . M 5 48.229 52.614 -11.292 1 116.16 ? H161 MPG 312 A 1 HETATM 53 H H162 MPG . . . M 5 49.73 52.144 -11.473 1 116.16 ? H162 MPG 312 A 1 HETATM 54 H H171 MPG . . . M 5 50.218 54.076 -12.699 1 117.67 ? H171 MPG 312 A 1 HETATM 55 H H172 MPG . . . M 5 48.703 54.532 -12.617 1 117.67 ? H172 MPG 312 A 1 HETATM 56 H H181 MPG . . . M 5 49.954 55.703 -11.008 1 113.85 ? H181 MPG 312 A 1 HETATM 57 H H182 MPG . . . M 5 48.907 54.766 -10.276 1 113.85 ? H182 MPG 312 A 1 HETATM 58 H H183 MPG . . . M 5 50.428 54.333 -10.371 1 113.85 ? H183 MPG 312 A 1 HETATM 59 H HX31 MPG . . . M 5 50.497 37.31 -12.297 1 117.68 ? HX31 MPG 312 A 1 HETATM 60 H HX32 MPG . . . M 5 51.272 37.919 -13.537 1 117.68 ? HX32 MPG 312 A 1 HETATM 61 H HXD MPG . . . M 5 50.897 34.193 -13.058 1 164.43 ? HXD MPG 312 A 1 HETATM 62 H H2 MPG . . . M 5 50.542 33.129 -14.671 1 175.47 ? H2 MPG 312 A 1 HETATM 63 H H211 MPG . . . M 5 49.785 32.595 -11.86 1 159.01 ? H211 MPG 312 A 1 HETATM 64 H H212 MPG . . . M 5 48.378 33.06 -12.419 1 159.01 ? H212 MPG 312 A 1 HETATM 65 H H3 MPG . . . M 5 49.793 34.553 -10.805 1 135.6 ? H3 MPG 312 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #