data_7PNC # _model_server_result.job_id FAbkyY2sWwa2hLW_bM905Q _model_server_result.datetime_utc '2024-11-18 07:50:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":316}' # _entry.id 7PNC # _exptl.entry_id 7PNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PNC _cell.length_a 89.75 _cell.length_b 131.7 _cell.length_c 51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N ? 4 N N N ? 4 P N N ? 4 Q N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.43 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7PNC _atom_sites.fract_transf_matrix[1][1] 0.011142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 CL A 1 302 500 CL CL . D 4 BOG A 1 303 601 BOG LIG . E 4 BOG A 1 304 701 BOG LIG . F 4 BOG A 1 305 801 BOG BOG . G 5 MPG A 1 306 901 MPG MPG . H 4 BOG A 1 307 1001 BOG BOG . I 4 BOG A 1 308 1101 BOG BOG . J 5 MPG A 1 309 1201 MPG MPG . K 5 MPG A 1 310 1301 MPG MPG . L 5 MPG A 1 311 1401 MPG MPG . M 5 MPG A 1 312 1501 MPG MPG . N 4 BOG A 1 313 1601 BOG BOG . O 5 MPG A 1 314 1701 MPG MPG . P 4 BOG A 1 315 1801 BOG BOG . Q 4 BOG A 1 316 1901 BOG BOG . R 3 CL A 1 317 1 CL CL . S 6 HOH A 1 401 27 HOH HOH . S 6 HOH A 2 402 32 HOH HOH . S 6 HOH A 3 403 49 HOH HOH . S 6 HOH A 4 404 12 HOH HOH . S 6 HOH A 5 405 17 HOH HOH . S 6 HOH A 6 406 5 HOH HOH . S 6 HOH A 7 407 46 HOH HOH . S 6 HOH A 8 408 3 HOH HOH . S 6 HOH A 9 409 48 HOH HOH . S 6 HOH A 10 410 2 HOH HOH . S 6 HOH A 11 411 7 HOH HOH . S 6 HOH A 12 412 36 HOH HOH . S 6 HOH A 13 413 15 HOH HOH . S 6 HOH A 14 414 19 HOH HOH . S 6 HOH A 15 415 43 HOH HOH . S 6 HOH A 16 416 1 HOH HOH . S 6 HOH A 17 417 6 HOH HOH . S 6 HOH A 18 418 4 HOH HOH . S 6 HOH A 19 419 34 HOH HOH . S 6 HOH A 20 420 8 HOH HOH . S 6 HOH A 21 421 10 HOH HOH . S 6 HOH A 22 422 25 HOH HOH . S 6 HOH A 23 423 29 HOH HOH . S 6 HOH A 24 424 14 HOH HOH . S 6 HOH A 25 425 39 HOH HOH . S 6 HOH A 26 426 9 HOH HOH . S 6 HOH A 27 427 41 HOH HOH . S 6 HOH A 28 428 44 HOH HOH . S 6 HOH A 29 429 18 HOH HOH . S 6 HOH A 30 430 35 HOH HOH . S 6 HOH A 31 431 42 HOH HOH . S 6 HOH A 32 432 26 HOH HOH . S 6 HOH A 33 433 40 HOH HOH . S 6 HOH A 34 434 11 HOH HOH . S 6 HOH A 35 435 33 HOH HOH . S 6 HOH A 36 436 38 HOH HOH . S 6 HOH A 37 437 37 HOH HOH . S 6 HOH A 38 438 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . Q 4 30.882 25.608 17.134 1 135.63 ? C1 BOG 316 A 1 HETATM 2 O O1 BOG . . . Q 4 30.405 24.612 17.929 1 124.11 ? O1 BOG 316 A 1 HETATM 3 C C2 BOG . . . Q 4 30.33 26.941 17.63 1 134.95 ? C2 BOG 316 A 1 HETATM 4 O O2 BOG . . . Q 4 28.903 26.913 17.629 1 136.2 ? O2 BOG 316 A 1 HETATM 5 C C3 BOG . . . Q 4 30.784 28.094 16.795 1 145.85 ? C3 BOG 316 A 1 HETATM 6 O O3 BOG . . . Q 4 30.844 29.288 17.617 1 133.17 ? O3 BOG 316 A 1 HETATM 7 C C4 BOG . . . Q 4 32.132 27.867 16.133 1 171.74 ? C4 BOG 316 A 1 HETATM 8 O O4 BOG . . . Q 4 31.929 27.349 14.843 1 188.9 ? O4 BOG 316 A 1 HETATM 9 C C5 BOG . . . Q 4 33.036 26.898 16.928 1 160.16 ? C5 BOG 316 A 1 HETATM 10 O O5 BOG . . . Q 4 32.409 25.59 17.176 1 159.15 ? O5 BOG 316 A 1 HETATM 11 C C6 BOG . . . Q 4 33.426 27.526 18.265 1 131.26 ? C6 BOG 316 A 1 HETATM 12 O O6 BOG . . . Q 4 33.51 28.927 18.187 1 129.33 ? O6 BOG 316 A 1 HETATM 13 C C1' BOG . . . Q 4 29.422 23.729 17.321 1 117.69 ? C1' BOG 316 A 1 HETATM 14 C C2' BOG . . . Q 4 30.123 22.548 16.64 1 113.09 ? C2' BOG 316 A 1 HETATM 15 C C3' BOG . . . Q 4 29.329 21.265 16.786 1 125.19 ? C3' BOG 316 A 1 HETATM 16 C C4' BOG . . . Q 4 30.267 20.16 17.372 1 134.24 ? C4' BOG 316 A 1 HETATM 17 C C5' BOG . . . Q 4 29.754 18.697 17.074 1 128.37 ? C5' BOG 316 A 1 HETATM 18 C C6' BOG . . . Q 4 28.25 18.585 17.237 1 111.5 ? C6' BOG 316 A 1 HETATM 19 C C7' BOG . . . Q 4 27.86 17.212 17.799 1 106.21 ? C7' BOG 316 A 1 HETATM 20 C C8' BOG . . . Q 4 28.595 16.049 17.035 1 106.27 ? C8' BOG 316 A 1 HETATM 21 H H1 BOG . . . Q 4 30.585 25.455 16.224 1 162.76 ? H1 BOG 316 A 1 HETATM 22 H H2 BOG . . . Q 4 30.641 27.063 18.541 1 161.94 ? H2 BOG 316 A 1 HETATM 23 H HO2 BOG . . . Q 4 28.607 27.646 17.932 1 163.44 ? HO2 BOG 316 A 1 HETATM 24 H H3 BOG . . . Q 4 30.127 28.225 16.093 1 175.02 ? H3 BOG 316 A 1 HETATM 25 H HO3 BOG . . . Q 4 30.065 29.595 17.732 1 159.8 ? HO3 BOG 316 A 1 HETATM 26 H H4 BOG . . . Q 4 32.585 28.722 16.069 1 206.08 ? H4 BOG 316 A 1 HETATM 27 H HO4 BOG . . . Q 4 31.501 27.907 14.372 1 226.68 ? HO4 BOG 316 A 1 HETATM 28 H H5 BOG . . . Q 4 33.84 26.749 16.407 1 192.19 ? H5 BOG 316 A 1 HETATM 29 H H61 BOG . . . Q 4 32.76 27.287 18.929 1 157.51 ? H61 BOG 316 A 1 HETATM 30 H H62 BOG . . . Q 4 34.289 27.174 18.535 1 157.51 ? H62 BOG 316 A 1 HETATM 31 H HO6 BOG . . . Q 4 33.667 29.245 18.956 1 155.19 ? HO6 BOG 316 A 1 HETATM 32 H "H1'1" BOG . . . Q 4 28.824 23.393 18.007 1 141.23 ? "H1'1" BOG 316 A 1 HETATM 33 H "H1'2" BOG . . . Q 4 28.912 24.222 16.659 1 141.23 ? "H1'2" BOG 316 A 1 HETATM 34 H "H2'1" BOG . . . Q 4 30.23 22.746 15.697 1 135.7 ? "H2'1" BOG 316 A 1 HETATM 35 H "H2'2" BOG . . . Q 4 30.996 22.424 17.045 1 135.7 ? "H2'2" BOG 316 A 1 HETATM 36 H "H3'1" BOG . . . Q 4 28.998 20.988 15.918 1 150.22 ? "H3'1" BOG 316 A 1 HETATM 37 H "H3'2" BOG . . . Q 4 28.581 21.412 17.386 1 150.22 ? "H3'2" BOG 316 A 1 HETATM 38 H "H4'1" BOG . . . Q 4 31.15 20.264 16.982 1 161.09 ? "H4'1" BOG 316 A 1 HETATM 39 H "H4'2" BOG . . . Q 4 30.324 20.279 18.333 1 161.09 ? "H4'2" BOG 316 A 1 HETATM 40 H "H5'1" BOG . . . Q 4 30.183 18.082 17.69 1 154.04 ? "H5'1" BOG 316 A 1 HETATM 41 H "H5'2" BOG . . . Q 4 29.991 18.46 16.164 1 154.04 ? "H5'2" BOG 316 A 1 HETATM 42 H "H6'1" BOG . . . Q 4 27.827 18.705 16.372 1 133.81 ? "H6'1" BOG 316 A 1 HETATM 43 H "H6'2" BOG . . . Q 4 27.943 19.275 17.845 1 133.81 ? "H6'2" BOG 316 A 1 HETATM 44 H "H7'1" BOG . . . Q 4 28.101 17.174 18.737 1 127.46 ? "H7'1" BOG 316 A 1 HETATM 45 H "H7'2" BOG . . . Q 4 26.902 17.092 17.707 1 127.46 ? "H7'2" BOG 316 A 1 HETATM 46 H "H8'1" BOG . . . Q 4 29.536 16.049 17.272 1 127.52 ? "H8'1" BOG 316 A 1 HETATM 47 H "H8'2" BOG . . . Q 4 28.503 16.18 16.078 1 127.52 ? "H8'2" BOG 316 A 1 HETATM 48 H "H8'3" BOG . . . Q 4 28.201 15.198 17.283 1 127.52 ? "H8'3" BOG 316 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #