data_7PNI # _model_server_result.job_id jJVhY7E3o1Odd_DnbUrs9w _model_server_result.datetime_utc '2024-12-14 23:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7PNI # _exptl.entry_id 7PNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.347 _cell.angle_gamma 90 _cell.entry_id 7PNI _cell.length_a 100.14 _cell.length_b 31.79 _cell.length_c 73.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 AAA CYS 26 1_555 A SG CYS 84 AAA CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf2 A SG CYS 40 AAA CYS 40 1_555 A SG CYS 95 AAA CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 58 AAA CYS 58 1_555 A SG CYS 110 AAA CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf4 A SG CYS 65 AAA CYS 65 1_555 A SG CYS 72 AAA CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 B SG CYS 26 BBB CYS 26 1_555 B SG CYS 84 BBB CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 B SG CYS 40 BBB CYS 40 1_555 B SG CYS 95 BBB CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 B SG CYS 58 BBB CYS 58 1_555 B SG CYS 110 BBB CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 65 BBB CYS 65 1_555 B SG CYS 72 BBB CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc1 A NE2 HIS 105 AAA HIS 105 1_555 C PT PT . AAA PT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A NE2 HIS 119 AAA HIS 119 1_555 D PT PT . AAA PT 202 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 C PT PT . AAA PT 201 1_555 H O HOH . AAA HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 C PT PT . AAA PT 201 1_555 H O HOH . AAA HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc5 C PT PT . AAA PT 201 1_555 H O HOH . AAA HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc6 E PT PT . AAA PT 203 1_555 H O HOH . AAA HOH 339 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.724 ? metalc ? metalc7 B NE2 HIS 105 BBB HIS 105 1_555 F PT PT . BBB PT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 B ND1 HIS 119 BBB HIS 119 1_555 G PT PT . BBB PT 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc9 F PT PT . BBB PT 201 1_555 I O HOH . BBB HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc10 F PT PT . BBB PT 201 1_555 I O HOH . BBB HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc11 G PT PT . BBB PT 202 1_555 I O HOH . BBB HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PNI _atom_sites.fract_transf_matrix[1][1] 0.009986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.031456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PT AAA 1 201 1 PT PT . D 2 PT AAA 1 202 4 PT PT . E 2 PT AAA 1 203 1 PT PT . F 2 PT BBB 1 201 2 PT PT . G 2 PT BBB 1 202 3 PT PT . H 3 HOH AAA 1 301 155 HOH HOH . H 3 HOH AAA 2 302 150 HOH HOH . H 3 HOH AAA 3 303 154 HOH HOH . H 3 HOH AAA 4 304 7 HOH HOH . H 3 HOH AAA 5 305 46 HOH HOH . H 3 HOH AAA 6 306 74 HOH HOH . H 3 HOH AAA 7 307 47 HOH HOH . H 3 HOH AAA 8 308 50 HOH HOH . H 3 HOH AAA 9 309 55 HOH HOH . H 3 HOH AAA 10 310 158 HOH HOH . H 3 HOH AAA 11 311 93 HOH HOH . H 3 HOH AAA 12 312 20 HOH HOH . H 3 HOH AAA 13 313 139 HOH HOH . H 3 HOH AAA 14 314 31 HOH HOH . H 3 HOH AAA 15 315 10 HOH HOH . H 3 HOH AAA 16 316 4 HOH HOH . H 3 HOH AAA 17 317 95 HOH HOH . H 3 HOH AAA 18 318 30 HOH HOH . H 3 HOH AAA 19 319 96 HOH HOH . H 3 HOH AAA 20 320 98 HOH HOH . H 3 HOH AAA 21 321 42 HOH HOH . H 3 HOH AAA 22 322 29 HOH HOH . H 3 HOH AAA 23 323 6 HOH HOH . H 3 HOH AAA 24 324 44 HOH HOH . H 3 HOH AAA 25 325 19 HOH HOH . H 3 HOH AAA 26 326 11 HOH HOH . H 3 HOH AAA 27 327 3 HOH HOH . H 3 HOH AAA 28 328 53 HOH HOH . H 3 HOH AAA 29 329 54 HOH HOH . H 3 HOH AAA 30 330 5 HOH HOH . H 3 HOH AAA 31 331 58 HOH HOH . H 3 HOH AAA 32 332 61 HOH HOH . H 3 HOH AAA 33 333 140 HOH HOH . H 3 HOH AAA 34 334 144 HOH HOH . H 3 HOH AAA 35 335 8 HOH HOH . H 3 HOH AAA 36 336 43 HOH HOH . H 3 HOH AAA 37 337 75 HOH HOH . H 3 HOH AAA 38 338 130 HOH HOH . H 3 HOH AAA 39 339 136 HOH HOH . H 3 HOH AAA 40 340 9 HOH HOH . H 3 HOH AAA 41 341 94 HOH HOH . H 3 HOH AAA 42 342 60 HOH HOH . H 3 HOH AAA 43 343 146 HOH HOH . H 3 HOH AAA 44 344 36 HOH HOH . H 3 HOH AAA 45 345 38 HOH HOH . H 3 HOH AAA 46 346 51 HOH HOH . H 3 HOH AAA 47 347 77 HOH HOH . H 3 HOH AAA 48 348 63 HOH HOH . H 3 HOH AAA 49 349 72 HOH HOH . H 3 HOH AAA 50 350 145 HOH HOH . H 3 HOH AAA 51 351 97 HOH HOH . H 3 HOH AAA 52 352 52 HOH HOH . H 3 HOH AAA 53 353 65 HOH HOH . H 3 HOH AAA 54 354 129 HOH HOH . H 3 HOH AAA 55 355 34 HOH HOH . H 3 HOH AAA 56 356 167 HOH HOH . H 3 HOH AAA 57 357 39 HOH HOH . H 3 HOH AAA 58 358 142 HOH HOH . H 3 HOH AAA 59 359 66 HOH HOH . H 3 HOH AAA 60 360 165 HOH HOH . H 3 HOH AAA 61 361 49 HOH HOH . H 3 HOH AAA 62 362 166 HOH HOH . H 3 HOH AAA 63 363 121 HOH HOH . H 3 HOH AAA 64 364 78 HOH HOH . H 3 HOH AAA 65 365 62 HOH HOH . H 3 HOH AAA 66 366 35 HOH HOH . H 3 HOH AAA 67 367 100 HOH HOH . H 3 HOH AAA 68 368 48 HOH HOH . H 3 HOH AAA 69 369 156 HOH HOH . H 3 HOH AAA 70 370 128 HOH HOH . H 3 HOH AAA 71 371 138 HOH HOH . H 3 HOH AAA 72 372 25 HOH HOH . H 3 HOH AAA 73 373 76 HOH HOH . H 3 HOH AAA 74 374 143 HOH HOH . H 3 HOH AAA 75 375 161 HOH HOH . I 3 HOH BBB 1 301 163 HOH HOH . I 3 HOH BBB 2 302 85 HOH HOH . I 3 HOH BBB 3 303 118 HOH HOH . I 3 HOH BBB 4 304 89 HOH HOH . I 3 HOH BBB 5 305 119 HOH HOH . I 3 HOH BBB 6 306 16 HOH HOH . I 3 HOH BBB 7 307 115 HOH HOH . I 3 HOH BBB 8 308 64 HOH HOH . I 3 HOH BBB 9 309 153 HOH HOH . I 3 HOH BBB 10 310 82 HOH HOH . I 3 HOH BBB 11 311 12 HOH HOH . I 3 HOH BBB 12 312 41 HOH HOH . I 3 HOH BBB 13 313 57 HOH HOH . I 3 HOH BBB 14 314 40 HOH HOH . I 3 HOH BBB 15 315 18 HOH HOH . I 3 HOH BBB 16 316 67 HOH HOH . I 3 HOH BBB 17 317 17 HOH HOH . I 3 HOH BBB 18 318 87 HOH HOH . I 3 HOH BBB 19 319 152 HOH HOH . I 3 HOH BBB 20 320 105 HOH HOH . I 3 HOH BBB 21 321 116 HOH HOH . I 3 HOH BBB 22 322 148 HOH HOH . I 3 HOH BBB 23 323 32 HOH HOH . I 3 HOH BBB 24 324 56 HOH HOH . I 3 HOH BBB 25 325 137 HOH HOH . I 3 HOH BBB 26 326 71 HOH HOH . I 3 HOH BBB 27 327 141 HOH HOH . I 3 HOH BBB 28 328 122 HOH HOH . I 3 HOH BBB 29 329 125 HOH HOH . I 3 HOH BBB 30 330 26 HOH HOH . I 3 HOH BBB 31 331 159 HOH HOH . I 3 HOH BBB 32 332 151 HOH HOH . I 3 HOH BBB 33 333 127 HOH HOH . I 3 HOH BBB 34 334 160 HOH HOH . I 3 HOH BBB 35 335 147 HOH HOH . I 3 HOH BBB 36 336 120 HOH HOH . I 3 HOH BBB 37 337 27 HOH HOH . I 3 HOH BBB 38 338 164 HOH HOH . I 3 HOH BBB 39 339 88 HOH HOH . I 3 HOH BBB 40 340 133 HOH HOH . I 3 HOH BBB 41 341 132 HOH HOH . I 3 HOH BBB 42 342 162 HOH HOH . I 3 HOH BBB 43 343 81 HOH HOH . I 3 HOH BBB 44 344 84 HOH HOH . I 3 HOH BBB 45 345 79 HOH HOH . I 3 HOH BBB 46 346 21 HOH HOH . I 3 HOH BBB 47 347 80 HOH HOH . I 3 HOH BBB 48 348 69 HOH HOH . I 3 HOH BBB 49 349 73 HOH HOH . I 3 HOH BBB 50 350 123 HOH HOH . I 3 HOH BBB 51 351 86 HOH HOH . I 3 HOH BBB 52 352 157 HOH HOH . I 3 HOH BBB 53 353 24 HOH HOH . I 3 HOH BBB 54 354 22 HOH HOH . I 3 HOH BBB 55 355 111 HOH HOH . I 3 HOH BBB 56 356 70 HOH HOH . I 3 HOH BBB 57 357 28 HOH HOH . I 3 HOH BBB 58 358 33 HOH HOH . I 3 HOH BBB 59 359 114 HOH HOH . I 3 HOH BBB 60 360 108 HOH HOH . I 3 HOH BBB 61 361 149 HOH HOH . I 3 HOH BBB 62 362 23 HOH HOH . I 3 HOH BBB 63 363 106 HOH HOH . I 3 HOH BBB 64 364 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.929 _atom_site.Cartn_y -1.766 _atom_site.Cartn_z -2.521 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 56.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 202 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #