data_7PNS # _model_server_result.job_id 3aoQr5PVBl64MbpfvI2eUA _model_server_result.datetime_utc '2025-07-16 22:40:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7PNS # _exptl.entry_id 7PNS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.353 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-6-[5-[(dimethylamino)methyl]-2-fluoranyl-phenyl]-1H-indole-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PNS _cell.length_a 69.444 _cell.length_b 73.122 _cell.length_c 77.172 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PNS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C18 H17 F N4' _chem_comp.formula_weight 308.353 _chem_comp.id 7W8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-6-[5-[(dimethylamino)methyl]-2-fluoranyl-phenyl]-1H-indole-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-Amino-6-[5-[(dimethylamino)methyl]-2-fluorophenyl]-1H-indole-3-carbonitrile # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C6 7W8 sing 1 n n C5 C6 7W8 doub 2 n y C5 C4 7W8 sing 3 n y C6 C7 7W8 sing 4 n y C4 C3 7W8 doub 5 n y C7 C9 7W8 sing 6 n n C7 C8 7W8 doub 7 n y C17 C9 7W8 doub 8 n y C17 C16 7W8 sing 9 n y C9 C10 7W8 sing 10 n y C16 N3 7W8 sing 11 n y C16 C12 7W8 doub 12 n y C10 C11 7W8 doub 13 n y C3 C8 7W8 sing 14 n y C3 C2 7W8 sing 15 n n N3 C15 7W8 sing 16 n y C11 C12 7W8 sing 17 n y C12 C13 7W8 sing 18 n y C15 C13 7W8 doub 19 n y C15 N2 7W8 sing 20 n n C13 C14 7W8 sing 21 n n C14 N1 7W8 trip 22 n n C2 H1 7W8 sing 23 n n C2 H2 7W8 sing 24 n n C4 H4 7W8 sing 25 n n C5 H5 7W8 sing 26 n n C11 H6 7W8 sing 27 n n C8 H7 7W8 sing 28 n n N2 H8 7W8 sing 29 n n N2 H9 7W8 sing 30 n n N3 H10 7W8 sing 31 n n C10 H11 7W8 sing 32 n n C17 H12 7W8 sing 33 n n C2 N4 7W8 sing 34 n n N4 C18 7W8 sing 35 n n N4 C19 7W8 sing 36 n n C18 H3 7W8 sing 37 n n C18 H13 7W8 sing 38 n n C18 H14 7W8 sing 39 n n C19 H15 7W8 sing 40 n n C19 H16 7W8 sing 41 n n C19 H17 7W8 sing 42 n n # _atom_sites.entry_id 7PNS _atom_sites.fract_transf_matrix[1][1] 0.0144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD A 1 401 1 MPD MPD . D 4 7W8 A 1 402 401 7W8 081 . E 5 HOH A 1 501 70 HOH HOH . E 5 HOH A 2 502 24 HOH HOH . E 5 HOH A 3 503 84 HOH HOH . E 5 HOH A 4 504 146 HOH HOH . E 5 HOH A 5 505 147 HOH HOH . E 5 HOH A 6 506 13 HOH HOH . E 5 HOH A 7 507 112 HOH HOH . E 5 HOH A 8 508 59 HOH HOH . E 5 HOH A 9 509 97 HOH HOH . E 5 HOH A 10 510 65 HOH HOH . E 5 HOH A 11 511 56 HOH HOH . E 5 HOH A 12 512 116 HOH HOH . E 5 HOH A 13 513 96 HOH HOH . E 5 HOH A 14 514 7 HOH HOH . E 5 HOH A 15 515 135 HOH HOH . E 5 HOH A 16 516 95 HOH HOH . E 5 HOH A 17 517 167 HOH HOH . E 5 HOH A 18 518 138 HOH HOH . E 5 HOH A 19 519 109 HOH HOH . E 5 HOH A 20 520 102 HOH HOH . E 5 HOH A 21 521 152 HOH HOH . E 5 HOH A 22 522 118 HOH HOH . E 5 HOH A 23 523 10 HOH HOH . E 5 HOH A 24 524 100 HOH HOH . E 5 HOH A 25 525 157 HOH HOH . E 5 HOH A 26 526 57 HOH HOH . E 5 HOH A 27 527 93 HOH HOH . E 5 HOH A 28 528 159 HOH HOH . E 5 HOH A 29 529 87 HOH HOH . E 5 HOH A 30 530 3 HOH HOH . E 5 HOH A 31 531 40 HOH HOH . E 5 HOH A 32 532 123 HOH HOH . E 5 HOH A 33 533 79 HOH HOH . E 5 HOH A 34 534 51 HOH HOH . E 5 HOH A 35 535 67 HOH HOH . E 5 HOH A 36 536 63 HOH HOH . E 5 HOH A 37 537 11 HOH HOH . E 5 HOH A 38 538 27 HOH HOH . E 5 HOH A 39 539 81 HOH HOH . E 5 HOH A 40 540 99 HOH HOH . E 5 HOH A 41 541 33 HOH HOH . E 5 HOH A 42 542 42 HOH HOH . E 5 HOH A 43 543 132 HOH HOH . E 5 HOH A 44 544 86 HOH HOH . E 5 HOH A 45 545 14 HOH HOH . E 5 HOH A 46 546 137 HOH HOH . E 5 HOH A 47 547 168 HOH HOH . E 5 HOH A 48 548 78 HOH HOH . E 5 HOH A 49 549 45 HOH HOH . E 5 HOH A 50 550 12 HOH HOH . E 5 HOH A 51 551 166 HOH HOH . E 5 HOH A 52 552 90 HOH HOH . E 5 HOH A 53 553 18 HOH HOH . E 5 HOH A 54 554 98 HOH HOH . E 5 HOH A 55 555 15 HOH HOH . E 5 HOH A 56 556 122 HOH HOH . E 5 HOH A 57 557 149 HOH HOH . E 5 HOH A 58 558 107 HOH HOH . E 5 HOH A 59 559 22 HOH HOH . E 5 HOH A 60 560 133 HOH HOH . E 5 HOH A 61 561 47 HOH HOH . E 5 HOH A 62 562 4 HOH HOH . E 5 HOH A 63 563 34 HOH HOH . E 5 HOH A 64 564 44 HOH HOH . E 5 HOH A 65 565 50 HOH HOH . E 5 HOH A 66 566 16 HOH HOH . E 5 HOH A 67 567 126 HOH HOH . E 5 HOH A 68 568 8 HOH HOH . E 5 HOH A 69 569 9 HOH HOH . E 5 HOH A 70 570 52 HOH HOH . E 5 HOH A 71 571 41 HOH HOH . E 5 HOH A 72 572 17 HOH HOH . E 5 HOH A 73 573 1 HOH HOH . E 5 HOH A 74 574 5 HOH HOH . E 5 HOH A 75 575 54 HOH HOH . E 5 HOH A 76 576 143 HOH HOH . E 5 HOH A 77 577 29 HOH HOH . E 5 HOH A 78 578 32 HOH HOH . E 5 HOH A 79 579 60 HOH HOH . E 5 HOH A 80 580 76 HOH HOH . E 5 HOH A 81 581 111 HOH HOH . E 5 HOH A 82 582 80 HOH HOH . E 5 HOH A 83 583 25 HOH HOH . E 5 HOH A 84 584 101 HOH HOH . E 5 HOH A 85 585 117 HOH HOH . E 5 HOH A 86 586 30 HOH HOH . E 5 HOH A 87 587 43 HOH HOH . E 5 HOH A 88 588 115 HOH HOH . E 5 HOH A 89 589 73 HOH HOH . E 5 HOH A 90 590 128 HOH HOH . E 5 HOH A 91 591 69 HOH HOH . E 5 HOH A 92 592 105 HOH HOH . E 5 HOH A 93 593 92 HOH HOH . E 5 HOH A 94 594 38 HOH HOH . E 5 HOH A 95 595 142 HOH HOH . E 5 HOH A 96 596 23 HOH HOH . E 5 HOH A 97 597 26 HOH HOH . E 5 HOH A 98 598 46 HOH HOH . E 5 HOH A 99 599 145 HOH HOH . E 5 HOH A 100 600 31 HOH HOH . E 5 HOH A 101 601 119 HOH HOH . E 5 HOH A 102 602 106 HOH HOH . E 5 HOH A 103 603 28 HOH HOH . E 5 HOH A 104 604 49 HOH HOH . E 5 HOH A 105 605 136 HOH HOH . E 5 HOH A 106 606 53 HOH HOH . E 5 HOH A 107 607 172 HOH HOH . E 5 HOH A 108 608 154 HOH HOH . E 5 HOH A 109 609 160 HOH HOH . E 5 HOH A 110 610 36 HOH HOH . E 5 HOH A 111 611 113 HOH HOH . E 5 HOH A 112 612 20 HOH HOH . E 5 HOH A 113 613 83 HOH HOH . E 5 HOH A 114 614 48 HOH HOH . E 5 HOH A 115 615 75 HOH HOH . E 5 HOH A 116 616 91 HOH HOH . E 5 HOH A 117 617 21 HOH HOH . E 5 HOH A 118 618 62 HOH HOH . E 5 HOH A 119 619 88 HOH HOH . E 5 HOH A 120 620 71 HOH HOH . E 5 HOH A 121 621 134 HOH HOH . E 5 HOH A 122 622 171 HOH HOH . E 5 HOH A 123 623 124 HOH HOH . E 5 HOH A 124 624 37 HOH HOH . E 5 HOH A 125 625 158 HOH HOH . E 5 HOH A 126 626 153 HOH HOH . E 5 HOH A 127 627 121 HOH HOH . E 5 HOH A 128 628 162 HOH HOH . E 5 HOH A 129 629 110 HOH HOH . E 5 HOH A 130 630 151 HOH HOH . E 5 HOH A 131 631 108 HOH HOH . E 5 HOH A 132 632 127 HOH HOH . E 5 HOH A 133 633 161 HOH HOH . E 5 HOH A 134 634 165 HOH HOH . E 5 HOH A 135 635 150 HOH HOH . E 5 HOH A 136 636 61 HOH HOH . E 5 HOH A 137 637 66 HOH HOH . E 5 HOH A 138 638 129 HOH HOH . E 5 HOH A 139 639 82 HOH HOH . E 5 HOH A 140 640 120 HOH HOH . E 5 HOH A 141 641 155 HOH HOH . F 5 HOH B 1 101 6 HOH HOH . F 5 HOH B 2 102 141 HOH HOH . F 5 HOH B 3 103 89 HOH HOH . F 5 HOH B 4 104 125 HOH HOH . F 5 HOH B 5 105 131 HOH HOH . F 5 HOH B 6 106 114 HOH HOH . F 5 HOH B 7 107 85 HOH HOH . F 5 HOH B 8 108 64 HOH HOH . F 5 HOH B 9 109 103 HOH HOH . F 5 HOH B 10 110 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 7W8 . . . D 4 -2.499 13.824 -7.077 1 60.71 ? C2 7W8 402 A 1 HETATM 2 C C4 7W8 . . . D 4 -2.466 11.521 -8.098 1 61.58 ? C4 7W8 402 A 1 HETATM 3 C C5 7W8 . . . D 4 -3.101 10.382 -8.563 1 61.58 ? C5 7W8 402 A 1 HETATM 4 C C3 7W8 . . . D 4 -3.182 12.545 -7.499 1 60.91 ? C3 7W8 402 A 1 HETATM 5 C C6 7W8 . . . D 4 -4.466 10.286 -8.43 1 61.27 ? C6 7W8 402 A 1 HETATM 6 C C9 7W8 . . . D 4 -6.736 11.219 -7.7 1 53.21 ? C9 7W8 402 A 1 HETATM 7 C C14 7W8 . . . D 4 -11.959 10.353 -7.082 1 39.79 ? C14 7W8 402 A 1 HETATM 8 C C13 7W8 . . . D 4 -10.936 11.346 -7.193 1 41.55 ? C13 7W8 402 A 1 HETATM 9 C C12 7W8 . . . D 4 -9.529 11.067 -7.35 1 44.71 ? C12 7W8 402 A 1 HETATM 10 C C11 7W8 . . . D 4 -8.758 9.911 -7.351 1 48.74 ? C11 7W8 402 A 1 HETATM 11 C C8 7W8 . . . D 4 -4.56 12.395 -7.354 1 60.03 ? C8 7W8 402 A 1 HETATM 12 C C15 7W8 . . . D 4 -11.104 12.719 -7.286 1 41.82 ? C15 7W8 402 A 1 HETATM 13 N N1 7W8 . . . D 4 -12.711 9.505 -6.985 1 38.16 ? N1 7W8 402 A 1 HETATM 14 N N2 7W8 . . . D 4 -12.274 13.393 -7.186 1 40.24 ? N2 7W8 402 A 1 HETATM 15 N N3 7W8 . . . D 4 -9.867 13.309 -7.488 1 42.81 ? N3 7W8 402 A 1 HETATM 16 C C16 7W8 . . . D 4 -8.888 12.305 -7.532 1 46.3 ? C16 7W8 402 A 1 HETATM 17 C C10 7W8 . . . D 4 -7.386 9.992 -7.529 1 51.47 ? C10 7W8 402 A 1 HETATM 18 C C17 7W8 . . . D 4 -7.502 12.395 -7.705 1 49.5 ? C17 7W8 402 A 1 HETATM 19 C C7 7W8 . . . D 4 -5.246 11.274 -7.828 1 58.55 ? C7 7W8 402 A 1 HETATM 20 F F 7W8 . . . D 4 -5.067 9.173 -8.935 1 62.4 ? F 7W8 402 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #