data_7POC # _model_server_result.job_id Lt82bFCpy85xMGg0ARO8Kw _model_server_result.datetime_utc '2024-10-10 15:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7poc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 7POC # _exptl.entry_id 7POC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7POC _cell.length_a 57.04 _cell.length_b 134.79 _cell.length_c 184.02 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7POC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H,I,L 1 1 B,C,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 268 A LYS 243 1_555 E C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale2 B NZ LYS 268 B LYS 243 1_555 F C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? covale ? covale3 C NZ LYS 268 C LYS 243 1_555 G C4A PLP . C PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale4 D NZ LYS 268 D LYS 243 1_555 H C4A PLP . D PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 247 n y N1 C6 PLP sing 248 n y C2 C2A PLP sing 249 n n C2 C3 PLP sing 250 n y C2A H2A1 PLP sing 251 n n C2A H2A2 PLP sing 252 n n C2A H2A3 PLP sing 253 n n C3 O3 PLP sing 254 n n C3 C4 PLP doub 255 n y O3 HO3 PLP sing 256 n n C4 C4A PLP sing 257 n n C4 C5 PLP sing 258 n y C4A O4A PLP doub 259 n n C4A H4A PLP sing 260 n n C5 C6 PLP doub 261 n y C5 C5A PLP sing 262 n n C6 H6 PLP sing 263 n n C5A O4P PLP sing 264 n n C5A H5A1 PLP sing 265 n n C5A H5A2 PLP sing 266 n n O4P P PLP sing 267 n n P O1P PLP doub 268 n n P O2P PLP sing 269 n n P O3P PLP sing 270 n n O2P HOP2 PLP sing 271 n n O3P HOP3 PLP sing 272 n n # _atom_sites.entry_id 7POC _atom_sites.fract_transf_matrix[1][1] 0.017532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLP A 1 401 476 PLP PLP . F 2 PLP B 1 401 476 PLP PLP . G 2 PLP C 1 401 476 PLP PLP . H 2 PLP D 1 401 476 PLP PLP . I 3 HOH A 1 501 33 HOH HOH . I 3 HOH A 2 502 24 HOH HOH . I 3 HOH A 3 503 14 HOH HOH . I 3 HOH A 4 504 43 HOH HOH . I 3 HOH A 5 505 21 HOH HOH . I 3 HOH A 6 506 31 HOH HOH . I 3 HOH A 7 507 47 HOH HOH . I 3 HOH A 8 508 42 HOH HOH . I 3 HOH A 9 509 6 HOH HOH . I 3 HOH A 10 510 25 HOH HOH . I 3 HOH A 11 511 10 HOH HOH . I 3 HOH A 12 512 27 HOH HOH . I 3 HOH A 13 513 9 HOH HOH . I 3 HOH A 14 514 16 HOH HOH . I 3 HOH A 15 515 49 HOH HOH . J 3 HOH B 1 501 28 HOH HOH . J 3 HOH B 2 502 2 HOH HOH . J 3 HOH B 3 503 15 HOH HOH . J 3 HOH B 4 504 32 HOH HOH . J 3 HOH B 5 505 13 HOH HOH . J 3 HOH B 6 506 8 HOH HOH . J 3 HOH B 7 507 4 HOH HOH . J 3 HOH B 8 508 45 HOH HOH . J 3 HOH B 9 509 12 HOH HOH . J 3 HOH B 10 510 39 HOH HOH . J 3 HOH B 11 511 48 HOH HOH . K 3 HOH C 1 501 11 HOH HOH . K 3 HOH C 2 502 26 HOH HOH . K 3 HOH C 3 503 40 HOH HOH . K 3 HOH C 4 504 35 HOH HOH . K 3 HOH C 5 505 3 HOH HOH . K 3 HOH C 6 506 18 HOH HOH . K 3 HOH C 7 507 44 HOH HOH . K 3 HOH C 8 508 19 HOH HOH . K 3 HOH C 9 509 17 HOH HOH . K 3 HOH C 10 510 34 HOH HOH . K 3 HOH C 11 511 23 HOH HOH . K 3 HOH C 12 512 5 HOH HOH . K 3 HOH C 13 513 29 HOH HOH . K 3 HOH C 14 514 1 HOH HOH . K 3 HOH C 15 515 30 HOH HOH . L 3 HOH D 1 501 46 HOH HOH . L 3 HOH D 2 502 7 HOH HOH . L 3 HOH D 3 503 20 HOH HOH . L 3 HOH D 4 504 41 HOH HOH . L 3 HOH D 5 505 22 HOH HOH . L 3 HOH D 6 506 36 HOH HOH . L 3 HOH D 7 507 37 HOH HOH . L 3 HOH D 8 508 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . G 2 -4.322 -27.897 26.305 1 42.69 0 N1 PLP 401 C 1 HETATM 2 C C2 PLP . . . G 2 -4.937 -26.721 26.118 1 37.43 0 C2 PLP 401 C 1 HETATM 3 C C2A PLP . . . G 2 -4.449 -25.496 26.811 1 35.06 0 C2A PLP 401 C 1 HETATM 4 C C3 PLP . . . G 2 -6.067 -26.641 25.319 1 37.2 0 C3 PLP 401 C 1 HETATM 5 O O3 PLP . . . G 2 -6.661 -25.444 25.188 1 35.49 0 O3 PLP 401 C 1 HETATM 6 C C4 PLP . . . G 2 -6.512 -27.768 24.608 1 39.16 0 C4 PLP 401 C 1 HETATM 7 C C4A PLP . . . G 2 -7.612 -27.573 23.663 1 45.73 0 C4A PLP 401 C 1 HETATM 8 C C5 PLP . . . G 2 -5.825 -28.979 24.781 1 41.71 0 C5 PLP 401 C 1 HETATM 9 C C6 PLP . . . G 2 -4.763 -28.995 25.651 1 42.32 0 C6 PLP 401 C 1 HETATM 10 C C5A PLP . . . G 2 -6.239 -30.249 24.092 1 46.85 0 C5A PLP 401 C 1 HETATM 11 O O4P PLP . . . G 2 -6.1 -30.233 22.632 1 46.35 0 O4P PLP 401 C 1 HETATM 12 P P PLP . . . G 2 -6.287 -31.672 21.867 1 50.04 0 P PLP 401 C 1 HETATM 13 O O1P PLP . . . G 2 -7.466 -31.474 20.965 1 58.96 0 O1P PLP 401 C 1 HETATM 14 O O2P PLP . . . G 2 -5.009 -31.95 21.078 1 62.32 0 O2P PLP 401 C 1 HETATM 15 O O3P PLP . . . G 2 -6.549 -32.754 22.894 1 47.53 0 O3P PLP 401 C 1 HETATM 16 H H2A1 PLP . . . G 2 -5.205 -24.956 27.094 1 35.8 0 H2A1 PLP 401 C 1 HETATM 17 H H2A2 PLP . . . G 2 -3.892 -24.979 26.206 1 35.85 0 H2A2 PLP 401 C 1 HETATM 18 H H2A3 PLP . . . G 2 -3.928 -25.75 27.59 1 35.83 0 H2A3 PLP 401 C 1 HETATM 19 H H4A PLP . . . G 2 -8.304 -28.207 23.633 1 41.02 0 H4A PLP 401 C 1 HETATM 20 H H6 PLP . . . G 2 -4.297 -29.796 25.775 1 42.05 0 H6 PLP 401 C 1 HETATM 21 H H5A1 PLP . . . G 2 -7.179 -30.436 24.302 1 45.49 0 H5A1 PLP 401 C 1 HETATM 22 H H5A2 PLP . . . G 2 -5.702 -30.994 24.441 1 45.47 0 H5A2 PLP 401 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #