data_7POD # _model_server_result.job_id fVXKeMgn7NiJf43Ks7OI0Q _model_server_result.datetime_utc '2024-11-27 23:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7POD # _exptl.entry_id 7POD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7POD _cell.length_a 47.144 _cell.length_b 92.522 _cell.length_c 124.572 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7POD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG AMV C1 O1 . O4 HO4 . sing 2 ? 2 3 2 AMU NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NAG AMU C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B AMV 1 B 1 AMV AbA 702 166 2 n B NAG 2 B 2 NAG AbA 702 166 2 n B AMU 3 B 3 AMU AbA 702 166 2 n B NAG 4 B 4 NAG AbA 702 166 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 AMV . B AMV 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 AMU . B AMU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 B O4 AMU . B AMU 3 1_555 B C1 NAG . B NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A OD2 ASP 16 A ASP 421 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A OD2 ASP 18 A ASP 423 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 A OE1 GLU 20 A GLU 425 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc4 A OD2 ASP 98 A ASP 503 1_555 E CA CA . A CA 703 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A O GLY 115 A GLY 520 1_555 E CA CA . A CA 703 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 372 n n C1 C2 PEG sing 373 n n C1 H11 PEG sing 374 n n C1 H12 PEG sing 375 n n O1 HO1 PEG sing 376 n n C2 O2 PEG sing 377 n n C2 H21 PEG sing 378 n n C2 H22 PEG sing 379 n n O2 C3 PEG sing 380 n n C3 C4 PEG sing 381 n n C3 H31 PEG sing 382 n n C3 H32 PEG sing 383 n n C4 O4 PEG sing 384 n n C4 H41 PEG sing 385 n n C4 H42 PEG sing 386 n n O4 HO4 PEG sing 387 n n # _atom_sites.entry_id 7POD _atom_sites.fract_transf_matrix[1][1] 0.021212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1PE A 1 701 701 1PE 1PE . D 4 PEG A 1 702 703 PEG PEG . E 5 CA A 1 703 1 CA CA . F 6 HOH A 1 801 125 HOH HOH . F 6 HOH A 2 802 129 HOH HOH . F 6 HOH A 3 803 124 HOH HOH . F 6 HOH A 4 804 133 HOH HOH . F 6 HOH A 5 805 127 HOH HOH . F 6 HOH A 6 806 189 HOH HOH . F 6 HOH A 7 807 166 HOH HOH . F 6 HOH A 8 808 162 HOH HOH . F 6 HOH A 9 809 182 HOH HOH . F 6 HOH A 10 810 160 HOH HOH . F 6 HOH A 11 811 89 HOH HOH . F 6 HOH A 12 812 164 HOH HOH . F 6 HOH A 13 813 150 HOH HOH . F 6 HOH A 14 814 135 HOH HOH . F 6 HOH A 15 815 56 HOH HOH . F 6 HOH A 16 816 137 HOH HOH . F 6 HOH A 17 817 58 HOH HOH . F 6 HOH A 18 818 103 HOH HOH . F 6 HOH A 19 819 174 HOH HOH . F 6 HOH A 20 820 27 HOH HOH . F 6 HOH A 21 821 177 HOH HOH . F 6 HOH A 22 822 95 HOH HOH . F 6 HOH A 23 823 146 HOH HOH . F 6 HOH A 24 824 114 HOH HOH . F 6 HOH A 25 825 11 HOH HOH . F 6 HOH A 26 826 192 HOH HOH . F 6 HOH A 27 827 157 HOH HOH . F 6 HOH A 28 828 175 HOH HOH . F 6 HOH A 29 829 8 HOH HOH . F 6 HOH A 30 830 42 HOH HOH . F 6 HOH A 31 831 48 HOH HOH . F 6 HOH A 32 832 19 HOH HOH . F 6 HOH A 33 833 22 HOH HOH . F 6 HOH A 34 834 109 HOH HOH . F 6 HOH A 35 835 12 HOH HOH . F 6 HOH A 36 836 49 HOH HOH . F 6 HOH A 37 837 87 HOH HOH . F 6 HOH A 38 838 80 HOH HOH . F 6 HOH A 39 839 191 HOH HOH . F 6 HOH A 40 840 155 HOH HOH . F 6 HOH A 41 841 193 HOH HOH . F 6 HOH A 42 842 153 HOH HOH . F 6 HOH A 43 843 40 HOH HOH . F 6 HOH A 44 844 66 HOH HOH . F 6 HOH A 45 845 159 HOH HOH . F 6 HOH A 46 846 130 HOH HOH . F 6 HOH A 47 847 78 HOH HOH . F 6 HOH A 48 848 23 HOH HOH . F 6 HOH A 49 849 67 HOH HOH . F 6 HOH A 50 850 79 HOH HOH . F 6 HOH A 51 851 126 HOH HOH . F 6 HOH A 52 852 62 HOH HOH . F 6 HOH A 53 853 134 HOH HOH . F 6 HOH A 54 854 74 HOH HOH . F 6 HOH A 55 855 54 HOH HOH . F 6 HOH A 56 856 138 HOH HOH . F 6 HOH A 57 857 73 HOH HOH . F 6 HOH A 58 858 92 HOH HOH . F 6 HOH A 59 859 101 HOH HOH . F 6 HOH A 60 860 65 HOH HOH . F 6 HOH A 61 861 60 HOH HOH . F 6 HOH A 62 862 32 HOH HOH . F 6 HOH A 63 863 63 HOH HOH . F 6 HOH A 64 864 34 HOH HOH . F 6 HOH A 65 865 64 HOH HOH . F 6 HOH A 66 866 36 HOH HOH . F 6 HOH A 67 867 178 HOH HOH . F 6 HOH A 68 868 118 HOH HOH . F 6 HOH A 69 869 158 HOH HOH . F 6 HOH A 70 870 26 HOH HOH . F 6 HOH A 71 871 115 HOH HOH . F 6 HOH A 72 872 93 HOH HOH . F 6 HOH A 73 873 53 HOH HOH . F 6 HOH A 74 874 112 HOH HOH . F 6 HOH A 75 875 45 HOH HOH . F 6 HOH A 76 876 7 HOH HOH . F 6 HOH A 77 877 128 HOH HOH . F 6 HOH A 78 878 33 HOH HOH . F 6 HOH A 79 879 5 HOH HOH . F 6 HOH A 80 880 104 HOH HOH . F 6 HOH A 81 881 30 HOH HOH . F 6 HOH A 82 882 156 HOH HOH . F 6 HOH A 83 883 97 HOH HOH . F 6 HOH A 84 884 31 HOH HOH . F 6 HOH A 85 885 173 HOH HOH . F 6 HOH A 86 886 90 HOH HOH . F 6 HOH A 87 887 24 HOH HOH . F 6 HOH A 88 888 88 HOH HOH . F 6 HOH A 89 889 10 HOH HOH . F 6 HOH A 90 890 83 HOH HOH . F 6 HOH A 91 891 61 HOH HOH . F 6 HOH A 92 892 185 HOH HOH . F 6 HOH A 93 893 179 HOH HOH . F 6 HOH A 94 894 29 HOH HOH . F 6 HOH A 95 895 37 HOH HOH . F 6 HOH A 96 896 68 HOH HOH . F 6 HOH A 97 897 144 HOH HOH . F 6 HOH A 98 898 136 HOH HOH . F 6 HOH A 99 899 6 HOH HOH . F 6 HOH A 100 900 154 HOH HOH . F 6 HOH A 101 901 140 HOH HOH . F 6 HOH A 102 902 50 HOH HOH . F 6 HOH A 103 903 35 HOH HOH . F 6 HOH A 104 904 148 HOH HOH . F 6 HOH A 105 905 161 HOH HOH . F 6 HOH A 106 906 91 HOH HOH . F 6 HOH A 107 907 119 HOH HOH . F 6 HOH A 108 908 85 HOH HOH . F 6 HOH A 109 909 75 HOH HOH . F 6 HOH A 110 910 55 HOH HOH . F 6 HOH A 111 911 117 HOH HOH . F 6 HOH A 112 912 100 HOH HOH . F 6 HOH A 113 913 181 HOH HOH . F 6 HOH A 114 914 108 HOH HOH . F 6 HOH A 115 915 84 HOH HOH . F 6 HOH A 116 916 86 HOH HOH . F 6 HOH A 117 917 21 HOH HOH . F 6 HOH A 118 918 151 HOH HOH . F 6 HOH A 119 919 41 HOH HOH . F 6 HOH A 120 920 94 HOH HOH . F 6 HOH A 121 921 43 HOH HOH . F 6 HOH A 122 922 47 HOH HOH . F 6 HOH A 123 923 16 HOH HOH . F 6 HOH A 124 924 132 HOH HOH . F 6 HOH A 125 925 110 HOH HOH . F 6 HOH A 126 926 17 HOH HOH . F 6 HOH A 127 927 15 HOH HOH . F 6 HOH A 128 928 69 HOH HOH . F 6 HOH A 129 929 28 HOH HOH . F 6 HOH A 130 930 82 HOH HOH . F 6 HOH A 131 931 170 HOH HOH . F 6 HOH A 132 932 167 HOH HOH . F 6 HOH A 133 933 105 HOH HOH . F 6 HOH A 134 934 20 HOH HOH . F 6 HOH A 135 935 122 HOH HOH . F 6 HOH A 136 936 38 HOH HOH . F 6 HOH A 137 937 165 HOH HOH . F 6 HOH A 138 938 44 HOH HOH . F 6 HOH A 139 939 169 HOH HOH . F 6 HOH A 140 940 57 HOH HOH . F 6 HOH A 141 941 46 HOH HOH . F 6 HOH A 142 942 51 HOH HOH . F 6 HOH A 143 943 39 HOH HOH . F 6 HOH A 144 944 52 HOH HOH . F 6 HOH A 145 945 180 HOH HOH . F 6 HOH A 146 946 176 HOH HOH . F 6 HOH A 147 947 190 HOH HOH . F 6 HOH A 148 948 113 HOH HOH . F 6 HOH A 149 949 141 HOH HOH . F 6 HOH A 150 950 184 HOH HOH . F 6 HOH A 151 951 121 HOH HOH . F 6 HOH A 152 952 186 HOH HOH . F 6 HOH A 153 953 106 HOH HOH . F 6 HOH A 154 954 149 HOH HOH . F 6 HOH A 155 955 107 HOH HOH . F 6 HOH A 156 956 171 HOH HOH . F 6 HOH A 157 957 147 HOH HOH . F 6 HOH A 158 958 143 HOH HOH . F 6 HOH A 159 959 145 HOH HOH . F 6 HOH A 160 960 183 HOH HOH . F 6 HOH A 161 961 188 HOH HOH . F 6 HOH A 162 962 168 HOH HOH . F 6 HOH A 163 963 187 HOH HOH . F 6 HOH A 164 964 72 HOH HOH . F 6 HOH A 165 965 163 HOH HOH . F 6 HOH A 166 966 139 HOH HOH . F 6 HOH A 167 967 172 HOH HOH . F 6 HOH A 168 968 70 HOH HOH . F 6 HOH A 169 969 131 HOH HOH . F 6 HOH A 170 970 152 HOH HOH . F 6 HOH A 171 971 77 HOH HOH . F 6 HOH A 172 972 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 13.302 41.195 5.97 1 41.58 0 C1 PEG 702 A 1 HETATM 2 O O1 PEG . . . D 4 14.382 40.77 5.197 1 49.8 0 O1 PEG 702 A 1 HETATM 3 C C2 PEG . . . D 4 13.308 40.591 7.333 1 41.95 0 C2 PEG 702 A 1 HETATM 4 O O2 PEG . . . D 4 12.109 40.964 8.013 1 41.41 0 O2 PEG 702 A 1 HETATM 5 C C3 PEG . . . D 4 12.116 42.31 8.463 1 34.47 0 C3 PEG 702 A 1 HETATM 6 C C4 PEG . . . D 4 10.792 42.728 8.988 1 34.35 0 C4 PEG 702 A 1 HETATM 7 O O4 PEG . . . D 4 10.596 44.184 8.895 1 36.07 0 O4 PEG 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #